Wall clock time and date at job start Mon Mar 30 2020 23:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 119.99833 * 2 1 4 4 C 1.38208 * 119.99955 * 179.72174 * 3 2 1 5 5 C 1.38259 * 120.00022 * 0.55503 * 4 3 2 6 6 N 1.48020 * 120.00273 * 179.74005 * 5 4 3 7 7 O 1.21803 * 119.99894 * 179.72750 * 6 5 4 8 8 O 1.21799 * 119.99903 * 359.45649 * 6 5 4 9 9 C 1.38218 * 119.99738 * 359.46890 * 5 4 3 10 10 C 1.38205 * 119.99851 * 180.02562 * 2 1 3 11 11 C 1.50699 * 120.00404 * 359.97438 * 10 2 1 12 12 H 1.08998 * 109.46955 * 325.02039 * 11 10 2 13 13 C 1.52999 * 109.47497 * 85.01779 * 11 10 2 14 14 N 1.46897 * 109.47141 * 205.02163 * 11 10 2 15 15 C 1.46901 * 110.99971 * 154.99599 * 14 11 10 16 16 H 1.09005 * 109.46992 * 35.00087 * 15 14 11 17 17 C 1.52998 * 109.47551 * 274.99838 * 15 14 11 18 18 C 1.50700 * 109.47414 * 154.99867 * 15 14 11 19 19 H 1.08003 * 119.99491 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00647 * 180.02562 * 18 15 14 21 21 N 1.31513 * 119.99553 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00362 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47227 * 89.99461 * 22 20 18 24 24 H 1.48503 * 109.46934 * 209.99520 * 22 20 18 25 25 H 1.48498 * 109.46742 * 329.99179 * 22 20 18 26 26 H 1.08998 * 109.47098 * 269.97749 * 1 2 3 27 27 H 1.09010 * 109.47020 * 29.97751 * 1 2 3 28 28 H 1.09002 * 109.46986 * 149.97354 * 1 2 3 29 29 H 1.08001 * 120.00396 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.00288 * 180.29386 * 4 3 2 31 31 H 1.07992 * 119.99797 * 180.27498 * 9 5 4 32 32 H 1.08997 * 109.47492 * 300.00726 * 13 11 10 33 33 H 1.08998 * 109.46805 * 60.00168 * 13 11 10 34 34 H 1.08995 * 109.47151 * 179.97438 * 13 11 10 35 35 H 1.00902 * 111.00288 * 278.94853 * 14 11 10 36 36 H 1.09000 * 109.47474 * 179.97438 * 17 15 14 37 37 H 1.08999 * 109.46759 * 300.00270 * 17 15 14 38 38 H 1.09008 * 109.46727 * 59.99774 * 17 15 14 39 39 H 0.97000 * 120.00383 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1974 0.0058 5 6 4.2717 0.0001 0.0000 6 7 5.7519 0.0001 0.0004 7 8 6.3609 -1.0548 0.0004 8 8 6.3609 1.0549 -0.0041 9 6 3.5806 -1.1970 -0.0005 10 6 2.1980 -1.1969 -0.0005 11 6 1.4446 -2.5020 -0.0005 12 1 0.5340 -2.3958 0.5890 13 6 1.0805 -2.8808 -1.4375 14 7 2.2869 -3.5537 0.5847 15 6 1.4655 -4.6352 1.1447 16 1 0.5775 -4.7737 0.5279 17 6 1.0448 -4.2706 2.5698 18 6 2.2649 -5.9125 1.1683 19 1 3.2817 -5.9199 0.8041 20 6 1.6985 -7.0716 1.6548 21 7 0.4606 -7.0623 2.0988 22 14 2.6897 -8.6546 1.6847 23 1 3.4141 -8.7607 2.9766 24 1 1.7747 -9.8144 1.5336 25 1 3.6680 -8.6470 0.5676 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.6583 2.1327 0.0004 30 1 4.1203 2.1327 0.0106 31 1 4.1206 -2.1322 -0.0005 32 1 0.4556 -2.1005 -1.8718 33 1 1.9911 -2.9871 -2.0270 34 1 0.5360 -3.8250 -1.4375 35 1 2.9422 -3.9116 -0.0940 36 1 0.4350 -5.0729 2.9852 37 1 1.9328 -4.1321 3.1865 38 1 0.4665 -3.3467 2.5527 39 1 0.0621 -7.8776 2.4414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:14 Heat of formation + Delta-G solvation = 11.570363 kcal Electronic energy + Delta-G solvation = -21720.958273 eV Core-core repulsion = 18438.415749 eV Total energy + Delta-G solvation = -3282.542524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.02775 -39.98271 -36.72760 -36.38241 -33.91185 -33.09112 -31.28625 -29.51815 -28.62450 -27.08754 -25.30067 -25.03618 -23.86389 -21.94667 -20.86378 -19.69874 -18.79293 -18.43978 -17.37165 -16.57734 -15.92032 -15.73998 -14.93552 -14.68696 -14.26534 -13.98092 -13.89837 -13.45676 -12.97882 -12.64382 -12.39815 -12.26741 -12.15203 -11.99259 -11.58538 -11.45388 -11.21396 -11.12794 -10.99979 -10.98621 -10.75232 -10.65324 -10.47980 -10.22976 -10.03169 -9.31895 -9.00952 -8.93189 -8.55685 -7.50314 -6.10566 -4.17065 -0.04409 1.01770 1.45249 1.56320 3.26798 3.29172 3.33549 3.36838 4.32978 4.37983 4.44731 4.60003 4.74238 4.80964 5.16800 5.22042 5.26335 5.35385 5.38144 5.43570 5.51329 5.61730 5.70198 5.81080 5.88401 6.01597 6.15649 6.21123 6.37041 6.43392 6.61686 6.75115 7.01705 7.09971 7.36333 7.69709 7.76204 7.79275 8.14259 8.22093 8.50398 8.91551 9.49608 10.95732 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.004870 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.572083 B = 5748.688948 C = 6847.015973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.034 4.034 3 C -0.125 4.125 4 C -0.065 4.065 5 C -0.055 4.055 6 N 0.033 4.967 7 O -0.157 6.157 8 O -0.177 6.177 9 C -0.025 4.025 10 C -0.057 4.057 11 C 0.117 3.883 12 H 0.092 0.908 13 C -0.176 4.176 14 N -0.684 5.684 15 C 0.214 3.786 16 H 0.006 0.994 17 C -0.126 4.126 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.335 0.665 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.002 0.998 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 15.226 -5.673 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.035 4.035 3 C -0.143 4.143 4 C -0.084 4.084 5 C -0.138 4.138 6 N 0.550 4.450 7 O -0.375 6.375 8 O -0.390 6.390 9 C -0.044 4.044 10 C -0.058 4.058 11 C 0.006 3.994 12 H 0.110 0.890 13 C -0.235 4.235 14 N -0.315 5.315 15 C 0.107 3.893 16 H 0.023 0.977 17 C -0.184 4.184 18 C -0.559 4.559 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.075 15.417 -4.974 16.332 hybrid contribution 0.663 -1.266 -0.633 1.563 sum -1.412 14.151 -5.608 15.287 Atomic orbital electron populations 1.21031 0.90026 1.03793 1.03571 1.20242 0.97211 0.92345 0.93677 1.20959 0.92394 0.98425 1.02538 1.20906 0.94660 0.96776 0.96071 1.21130 0.78864 0.97168 1.16655 1.43663 1.03859 1.00290 0.97149 1.94569 1.69195 1.20584 1.53139 1.94486 1.69360 1.20898 1.54233 1.20985 0.94412 0.97153 0.91861 1.20025 0.92170 0.95712 0.97938 1.20481 0.95620 0.88891 0.94384 0.88968 1.22501 1.01929 1.02220 0.96826 1.60871 1.18842 1.14597 1.37156 1.19114 0.91490 0.86701 0.91955 0.97687 1.21751 0.99429 0.98151 0.99085 1.21231 0.99534 0.92903 1.42188 0.92104 1.24896 0.94947 0.99024 0.94981 1.69882 1.12986 1.28039 1.41948 0.86514 0.79820 0.82595 0.78599 1.20565 1.21290 1.19850 0.89821 0.90866 0.90080 0.84035 0.83547 0.82254 0.92758 0.92555 0.91093 0.84705 0.89949 0.94908 0.97882 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.22 36.01 0.33 -0.79 16 2 C -0.03 -0.38 5.88 -104.63 -0.62 -0.99 16 3 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 4 C -0.06 -0.75 9.56 -39.58 -0.38 -1.12 16 5 C -0.06 -0.79 6.85 -79.94 -0.55 -1.34 16 6 N 0.03 0.53 4.45 33.96 0.15 0.68 16 7 O -0.16 -2.77 18.45 -29.46 -0.54 -3.32 16 8 O -0.18 -2.85 18.45 -29.46 -0.54 -3.39 16 9 C -0.02 -0.37 8.83 -39.58 -0.35 -0.72 16 10 C -0.06 -0.78 5.06 -104.63 -0.53 -1.31 16 11 C 0.12 1.81 1.91 -68.87 -0.13 1.68 16 12 H 0.09 1.47 5.96 -51.93 -0.31 1.16 16 13 C -0.18 -2.44 8.94 37.16 0.33 -2.10 16 14 N -0.68 -13.18 5.05 -102.17 -0.52 -13.69 16 15 C 0.21 5.02 2.41 -68.86 -0.17 4.86 16 16 H 0.01 0.14 7.11 -51.93 -0.37 -0.23 16 17 C -0.13 -2.97 9.17 37.16 0.34 -2.63 16 18 C -0.52 -13.61 8.59 -34.44 -0.30 -13.91 16 19 H 0.06 1.58 7.62 -52.48 -0.40 1.18 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 22 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.47 8.09 -51.92 -0.42 0.05 16 28 H 0.08 0.74 5.43 -51.93 -0.28 0.46 16 29 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.15 1.42 7.61 -52.49 -0.40 1.02 16 31 H 0.16 2.56 6.44 -52.49 -0.34 2.22 16 32 H 0.05 0.62 6.91 -51.93 -0.36 0.26 16 33 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.07 1.10 7.42 -51.93 -0.39 0.72 16 35 H 0.33 6.38 7.39 -39.29 -0.29 6.09 16 36 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.00 0.05 7.43 -51.92 -0.39 -0.34 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -28.53 324.27 -8.53 -37.06 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.08 Total: 4.22 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.49 Total: -18.39 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.26 Total: -36.87 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -1.09 Total: -6.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.53 -8.53 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.628 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds