Wall clock time and date at job start Mon Mar 30 2020 23:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 119.99833 * 2 1 4 4 C 1.38208 * 119.99955 * 179.72174 * 3 2 1 5 5 C 1.38259 * 120.00022 * 0.55503 * 4 3 2 6 6 N 1.48020 * 120.00273 * 179.74005 * 5 4 3 7 7 O 1.21803 * 119.99894 * 179.72750 * 6 5 4 8 8 O 1.21799 * 119.99903 * 359.45649 * 6 5 4 9 9 C 1.38218 * 119.99738 * 359.46890 * 5 4 3 10 10 C 1.38205 * 119.99851 * 180.02562 * 2 1 3 11 11 C 1.50699 * 120.00404 * 359.97438 * 10 2 1 12 12 H 1.08998 * 109.46955 * 325.02039 * 11 10 2 13 13 C 1.52999 * 109.47497 * 85.01779 * 11 10 2 14 14 N 1.46897 * 109.47141 * 205.02163 * 11 10 2 15 15 C 1.46901 * 110.99971 * 154.99599 * 14 11 10 16 16 H 1.09005 * 109.46992 * 35.00087 * 15 14 11 17 17 C 1.52998 * 109.47551 * 274.99838 * 15 14 11 18 18 C 1.50700 * 109.47414 * 154.99867 * 15 14 11 19 19 H 1.08003 * 119.99491 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00647 * 180.02562 * 18 15 14 21 21 N 1.31513 * 119.99553 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00362 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47227 * 89.99461 * 22 20 18 24 24 H 1.48503 * 109.46934 * 209.99520 * 22 20 18 25 25 H 1.48498 * 109.46742 * 329.99179 * 22 20 18 26 26 H 1.08998 * 109.47098 * 269.97749 * 1 2 3 27 27 H 1.09010 * 109.47020 * 29.97751 * 1 2 3 28 28 H 1.09002 * 109.46986 * 149.97354 * 1 2 3 29 29 H 1.08001 * 120.00396 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.00288 * 180.29386 * 4 3 2 31 31 H 1.07992 * 119.99797 * 180.27498 * 9 5 4 32 32 H 1.08997 * 109.47492 * 300.00726 * 13 11 10 33 33 H 1.08998 * 109.46805 * 60.00168 * 13 11 10 34 34 H 1.08995 * 109.47151 * 179.97438 * 13 11 10 35 35 H 1.00902 * 111.00288 * 278.94853 * 14 11 10 36 36 H 1.09000 * 109.47474 * 179.97438 * 17 15 14 37 37 H 1.08999 * 109.46759 * 300.00270 * 17 15 14 38 38 H 1.09008 * 109.46727 * 59.99774 * 17 15 14 39 39 H 0.97000 * 120.00383 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1974 0.0058 5 6 4.2717 0.0001 0.0000 6 7 5.7519 0.0001 0.0004 7 8 6.3609 -1.0548 0.0004 8 8 6.3609 1.0549 -0.0041 9 6 3.5806 -1.1970 -0.0005 10 6 2.1980 -1.1969 -0.0005 11 6 1.4446 -2.5020 -0.0005 12 1 0.5340 -2.3958 0.5890 13 6 1.0805 -2.8808 -1.4375 14 7 2.2869 -3.5537 0.5847 15 6 1.4655 -4.6352 1.1447 16 1 0.5775 -4.7737 0.5279 17 6 1.0448 -4.2706 2.5698 18 6 2.2649 -5.9125 1.1683 19 1 3.2817 -5.9199 0.8041 20 6 1.6985 -7.0716 1.6548 21 7 0.4606 -7.0623 2.0988 22 14 2.6897 -8.6546 1.6847 23 1 3.4141 -8.7607 2.9766 24 1 1.7747 -9.8144 1.5336 25 1 3.6680 -8.6470 0.5676 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.6583 2.1327 0.0004 30 1 4.1203 2.1327 0.0106 31 1 4.1206 -2.1322 -0.0005 32 1 0.4556 -2.1005 -1.8718 33 1 1.9911 -2.9871 -2.0270 34 1 0.5360 -3.8250 -1.4375 35 1 2.9422 -3.9116 -0.0940 36 1 0.4350 -5.0729 2.9852 37 1 1.9328 -4.1321 3.1865 38 1 0.4665 -3.3467 2.5527 39 1 0.0621 -7.8776 2.4414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:14 Heat of formation + Delta-G solvation = -3.779454 kcal Electronic energy + Delta-G solvation = -21721.623891 eV Core-core repulsion = 18438.415749 eV Total energy + Delta-G solvation = -3283.208142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.23066 -41.02609 -38.17319 -37.64744 -35.43510 -34.29430 -32.80452 -30.80291 -29.61733 -28.65067 -27.28583 -26.10035 -24.96757 -23.11574 -22.13429 -21.29892 -19.99324 -19.67883 -18.59274 -18.42273 -17.17702 -16.71161 -16.55132 -16.01997 -15.63462 -15.06509 -14.96946 -14.73634 -14.34414 -14.19919 -13.42491 -13.36541 -13.26126 -13.07036 -12.96812 -12.86852 -12.76033 -12.64641 -12.44419 -12.33956 -12.30023 -12.21578 -12.17338 -12.05267 -11.63301 -10.91516 -10.58723 -10.23001 -10.02114 -9.10765 -8.15147 -6.27593 -1.18503 0.06275 0.34666 0.44185 1.40297 1.42561 1.51428 2.31953 2.40369 3.14227 3.32869 3.47528 3.58074 3.75133 3.89958 4.02836 4.21897 4.27453 4.30442 4.57760 4.66582 4.76315 4.78880 4.81286 4.85831 4.89590 4.98562 5.05351 5.14480 5.17356 5.20440 5.28666 5.40428 5.49408 5.61491 5.68126 5.85244 6.21643 6.42327 6.51988 6.73660 6.95286 7.42578 8.90174 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.004870 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.572083 B = 5748.688948 C = 6847.015973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.022 4.022 3 C -0.107 4.107 4 C -0.055 4.055 5 C -0.074 4.074 6 N 0.034 4.966 7 O -0.218 6.218 8 O -0.157 6.157 9 C -0.042 4.042 10 C -0.071 4.071 11 C 0.120 3.880 12 H 0.089 0.911 13 C -0.168 4.168 14 N -0.687 5.687 15 C 0.222 3.778 16 H -0.016 1.016 17 C -0.114 4.114 18 C -0.538 4.538 19 H 0.054 0.946 20 C 0.019 3.981 21 N -0.914 5.914 22 Si 0.955 3.045 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.270 1.270 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.189 0.811 30 H 0.170 0.830 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.333 0.667 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.025 0.975 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 17.917 -6.195 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 C -0.125 4.125 4 C -0.074 4.074 5 C -0.157 4.157 6 N 0.548 4.452 7 O -0.421 6.421 8 O -0.378 6.378 9 C -0.062 4.062 10 C -0.073 4.073 11 C 0.010 3.990 12 H 0.107 0.893 13 C -0.227 4.227 14 N -0.317 5.317 15 C 0.114 3.886 16 H 0.002 0.998 17 C -0.173 4.173 18 C -0.576 4.576 19 H 0.072 0.928 20 C -0.181 4.181 21 N -0.553 5.553 22 Si 0.781 3.219 23 H -0.205 1.205 24 H -0.207 1.207 25 H -0.195 1.195 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.207 0.793 30 H 0.188 0.812 31 H 0.153 0.847 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.235 18.007 -5.506 19.106 hybrid contribution 0.944 -1.904 -0.486 2.180 sum -2.291 16.103 -5.992 17.333 Atomic orbital electron populations 1.21154 0.87879 1.05231 1.04345 1.20590 0.98688 0.91618 0.91376 1.21459 0.91527 0.99610 0.99910 1.21334 0.95569 0.96286 0.94245 1.21288 0.77363 0.98252 1.18837 1.43974 1.04850 0.99888 0.96536 1.94579 1.70096 1.21047 1.56388 1.94432 1.70095 1.20685 1.52555 1.20824 0.95024 0.96740 0.93601 1.19852 0.91533 0.95924 0.99990 1.20475 0.95047 0.88556 0.94927 0.89275 1.22402 1.02129 1.02112 0.96057 1.60742 1.18958 1.13923 1.38097 1.18852 0.90782 0.87208 0.91769 0.99799 1.21573 0.98667 0.98305 0.98732 1.21571 0.99549 0.94464 1.42019 0.92782 1.25605 0.95866 1.01838 0.94785 1.69988 1.14088 1.28703 1.42529 0.85601 0.78567 0.79269 0.78451 1.20512 1.20726 1.19497 0.89178 0.87470 0.90703 0.79338 0.81218 0.84735 0.89629 0.92663 0.93294 0.84950 0.92374 0.96082 0.95560 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.22 71.24 0.66 -1.03 16 2 C -0.02 -0.41 5.88 -19.87 -0.12 -0.52 16 3 C -0.11 -1.55 9.70 22.27 0.22 -1.33 16 4 C -0.06 -1.07 9.56 22.27 0.21 -0.86 16 5 C -0.07 -2.07 6.85 36.38 0.25 -1.82 16 6 N 0.03 1.13 4.45 -46.46 -0.21 0.92 16 7 O -0.22 -8.13 18.45 18.88 0.35 -7.78 16 8 O -0.16 -4.87 18.45 18.89 0.35 -4.52 16 9 C -0.04 -1.27 8.83 22.27 0.20 -1.08 16 10 C -0.07 -1.88 5.06 -19.87 -0.10 -1.98 16 11 C 0.12 3.68 1.91 44.17 0.08 3.76 16 12 H 0.09 2.77 5.96 -2.39 -0.01 2.75 16 13 C -0.17 -4.58 8.94 71.98 0.64 -3.94 16 14 N -0.69 -27.27 5.05 -477.17 -2.41 -29.68 16 15 C 0.22 10.70 2.41 44.17 0.11 10.80 16 16 H -0.02 -0.80 7.11 -2.38 -0.02 -0.82 16 17 C -0.11 -5.49 9.17 71.98 0.66 -4.83 16 18 C -0.54 -28.93 8.59 25.60 0.22 -28.71 16 19 H 0.05 2.91 7.62 -2.91 -0.02 2.89 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.91 -51.21 11.32 21.45 0.24 -50.97 16 22 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 0.72 8.09 -2.38 -0.02 0.70 16 28 H 0.07 1.10 5.43 -2.39 -0.01 1.09 16 29 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.17 2.52 7.61 -2.91 -0.02 2.49 16 31 H 0.13 4.65 6.44 -2.91 -0.02 4.63 16 32 H 0.08 1.77 6.91 -2.39 -0.02 1.75 16 33 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.05 1.54 7.42 -2.39 -0.02 1.52 16 35 H 0.33 13.35 7.39 -89.69 -0.66 12.69 16 36 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.03 1.09 7.43 -2.38 -0.02 1.07 16 39 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -64.22 324.27 4.24 -59.99 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.41 Total: 16.74 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.48 Total: -30.07 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.38 Total: -79.73 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.70 Total: -12.30 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.22 4.24 -59.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.206 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds