Wall clock time and date at job start Mon Mar 30 2020 23:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38264 * 119.99865 * 2 1 4 4 C 1.38212 * 119.99732 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00058 * 359.97438 * 4 3 2 6 6 N 1.48022 * 119.99847 * 180.02562 * 5 4 3 7 7 O 1.21794 * 119.99990 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99938 * 179.97438 * 6 5 4 9 9 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 10 10 C 1.38208 * 119.99981 * 179.72136 * 2 1 3 11 11 C 1.50700 * 120.00125 * 0.02562 * 10 2 1 12 12 H 1.09004 * 109.47001 * 39.99796 * 11 10 2 13 13 C 1.52997 * 109.47189 * 279.99576 * 11 10 2 14 14 N 1.46899 * 109.47163 * 159.99700 * 11 10 2 15 15 C 1.46905 * 111.00108 * 205.00067 * 14 11 10 16 16 H 1.08998 * 109.46910 * 325.00220 * 15 14 11 17 17 C 1.52998 * 109.46947 * 85.00037 * 15 14 11 18 18 C 1.50703 * 109.47210 * 205.00061 * 15 14 11 19 19 H 1.07998 * 119.99614 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99803 * 180.02562 * 18 15 14 21 21 N 1.31513 * 119.99588 * 179.97438 * 20 18 15 22 22 Si 1.86799 * 120.00403 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.47032 * 89.99688 * 22 20 18 24 24 H 1.48500 * 109.47447 * 210.00155 * 22 20 18 25 25 H 1.48502 * 109.47067 * 330.00146 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00251 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00352 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00333 * 1 2 3 29 29 H 1.07999 * 119.99783 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.99968 * 180.02562 * 4 3 2 31 31 H 1.08000 * 119.99571 * 180.02562 * 9 5 4 32 32 H 1.09003 * 109.46671 * 60.00092 * 13 11 10 33 33 H 1.09003 * 109.46794 * 179.97438 * 13 11 10 34 34 H 1.08988 * 109.47599 * 300.00221 * 13 11 10 35 35 H 1.00900 * 111.00024 * 81.04598 * 14 11 10 36 36 H 1.08998 * 109.47166 * 60.00340 * 17 15 14 37 37 H 1.09004 * 109.47323 * 179.97438 * 17 15 14 38 38 H 1.08997 * 109.47203 * 299.99974 * 17 15 14 39 39 H 0.97001 * 119.99834 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 7 5.7519 0.0001 0.0028 7 8 6.3609 1.0548 0.0032 8 8 6.3609 -1.0548 0.0042 9 6 3.5806 -1.1969 0.0016 10 6 2.1981 -1.1969 0.0058 11 6 1.4446 -2.5020 0.0116 12 1 0.5814 -2.4261 -0.6497 13 6 0.9722 -2.8119 1.4334 14 7 2.3270 -3.5790 -0.4568 15 6 1.5486 -4.6879 -1.0247 16 1 0.6163 -4.7983 -0.4710 17 6 1.2377 -4.3930 -2.4935 18 6 2.3455 -5.9632 -0.9261 19 1 3.3317 -5.9510 -0.4861 20 6 1.8159 -7.1452 -1.3987 21 7 2.5115 -8.2580 -1.3131 22 14 0.1110 -7.1658 -2.1618 23 1 0.2194 -6.9191 -3.6222 24 1 -0.5197 -8.4899 -1.9289 25 1 -0.7220 -6.1047 -1.5411 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 4.1207 -2.1322 0.0029 32 1 0.3174 -2.0128 1.7809 33 1 0.4268 -3.7557 1.4374 34 1 1.8353 -2.8878 2.0946 35 1 2.9284 -3.9025 0.2859 36 1 2.1700 -4.2827 -3.0472 37 1 0.6605 -5.2160 -2.9150 38 1 0.6613 -3.4707 -2.5648 39 1 2.1388 -9.0897 -1.6453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:21 Heat of formation + Delta-G solvation = 21.525066 kcal Electronic energy + Delta-G solvation = -21795.414459 eV Core-core repulsion = 18513.303604 eV Total energy + Delta-G solvation = -3282.110856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04754 -40.06736 -36.94037 -36.40510 -34.01638 -33.08982 -31.57838 -29.89956 -28.72386 -27.62754 -25.27597 -25.06481 -23.88182 -22.02478 -20.90498 -19.87214 -18.81304 -18.47664 -17.38482 -16.83780 -16.03289 -15.80839 -15.42855 -14.72222 -14.28804 -14.06144 -13.94819 -13.52338 -13.24279 -12.87047 -12.57357 -12.41072 -12.26784 -12.22509 -12.02219 -11.52568 -11.48394 -11.31736 -11.14549 -11.01609 -11.00650 -10.77415 -10.60398 -10.20924 -9.58923 -9.37645 -9.16126 -9.06864 -8.69606 -7.75793 -6.16950 -4.17887 -0.08274 0.95461 1.41070 1.53682 3.19764 3.22940 3.27186 3.31446 4.30135 4.31238 4.33954 4.53903 4.60911 4.72585 5.05039 5.15306 5.16698 5.23631 5.28041 5.32456 5.39590 5.52588 5.60417 5.74878 5.82243 5.90824 6.02826 6.11356 6.22413 6.28263 6.33868 6.44577 6.57681 6.59862 6.69367 7.25453 7.43958 7.75494 7.77513 8.12774 8.48904 8.87486 9.43981 10.95905 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.005016 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.685472 B = 5580.650941 C = 6555.409635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.035 4.035 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.055 4.055 6 N 0.031 4.969 7 O -0.177 6.177 8 O -0.154 6.154 9 C -0.024 4.024 10 C -0.061 4.061 11 C 0.116 3.884 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.674 5.674 15 C 0.185 3.815 16 H 0.005 0.995 17 C -0.139 4.139 18 C -0.523 4.523 19 H 0.080 0.920 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.269 1.269 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.344 0.656 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 18.612 3.957 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.035 4.035 3 C -0.143 4.143 4 C -0.083 4.083 5 C -0.138 4.138 6 N 0.550 4.450 7 O -0.389 6.389 8 O -0.372 6.372 9 C -0.043 4.043 10 C -0.062 4.062 11 C 0.005 3.995 12 H 0.109 0.891 13 C -0.238 4.238 14 N -0.306 5.306 15 C 0.077 3.923 16 H 0.022 0.978 17 C -0.197 4.197 18 C -0.561 4.561 19 H 0.098 0.902 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.195 1.195 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.225 18.704 3.302 19.987 hybrid contribution -0.755 -0.504 0.199 0.930 sum -6.980 18.200 3.502 19.805 Atomic orbital electron populations 1.21070 0.90103 1.03939 1.03497 1.20217 0.97136 0.92352 0.93833 1.20956 0.92408 0.98399 1.02560 1.20924 0.94658 0.96839 0.95855 1.21142 0.79021 0.97131 1.16458 1.43657 1.03803 1.00339 0.97244 1.94487 1.69314 1.20898 1.54236 1.94586 1.69129 1.20516 1.52952 1.21044 0.94394 0.97369 0.91504 1.19947 0.92223 0.95447 0.98596 1.20490 0.94814 0.88848 0.95357 0.89083 1.22541 1.01961 1.02331 0.96922 1.60644 1.21313 1.11762 1.36851 1.19528 0.92810 0.88946 0.91045 0.97771 1.22110 1.00381 0.97608 0.99613 1.21058 1.03996 0.89881 1.41145 0.90185 1.24922 0.97287 0.95452 0.95286 1.69886 1.37563 0.99257 1.46508 0.86823 0.85006 0.76336 0.79758 1.20500 1.22478 1.19472 0.89931 0.90799 0.89992 0.84023 0.83499 0.81867 0.92429 0.91164 0.92184 0.83641 0.92240 0.94318 0.95728 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.25 36.01 0.33 -0.67 16 2 C -0.03 -0.36 5.88 -104.62 -0.61 -0.97 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.06 -0.70 9.56 -39.58 -0.38 -1.08 16 5 C -0.05 -0.76 6.85 -79.95 -0.55 -1.31 16 6 N 0.03 0.50 4.45 33.96 0.15 0.65 16 7 O -0.18 -2.81 18.45 -29.46 -0.54 -3.35 16 8 O -0.15 -2.71 18.45 -29.46 -0.54 -3.25 16 9 C -0.02 -0.34 8.84 -39.58 -0.35 -0.69 16 10 C -0.06 -0.78 5.09 -104.63 -0.53 -1.32 16 11 C 0.12 1.66 1.93 -68.87 -0.13 1.52 16 12 H 0.09 1.30 6.25 -51.93 -0.32 0.97 16 13 C -0.18 -2.28 8.88 37.16 0.33 -1.95 16 14 N -0.67 -12.29 4.88 -102.17 -0.50 -12.79 16 15 C 0.19 4.04 2.01 -68.86 -0.14 3.90 16 16 H 0.00 0.10 6.17 -51.93 -0.32 -0.22 16 17 C -0.14 -2.94 8.88 37.16 0.33 -2.61 16 18 C -0.52 -13.92 9.17 -34.44 -0.32 -14.23 16 19 H 0.08 2.32 7.86 -52.49 -0.41 1.91 16 20 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 21 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 22 Si 0.89 21.19 24.37 -169.99 -4.14 17.04 16 23 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 24 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.08 0.66 5.00 -51.93 -0.26 0.40 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.15 1.36 7.61 -52.49 -0.40 0.96 16 31 H 0.16 2.57 6.39 -52.49 -0.34 2.24 16 32 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 33 H 0.07 0.99 7.43 -51.93 -0.39 0.61 16 34 H 0.06 0.76 8.13 -51.94 -0.42 0.34 16 35 H 0.34 6.35 7.51 -39.29 -0.29 6.05 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 38 H 0.02 0.44 7.43 -51.93 -0.39 0.05 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -30.05 316.71 -7.44 -37.49 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.91 Total: 4.27 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.50 Total: -18.99 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.43 Total: -37.98 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -1.09 Total: -6.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.05 -7.44 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.013 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds