Wall clock time and date at job start Mon Mar 30 2020 23:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99941 * 2 1 4 4 C 1.38215 * 119.99982 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99942 * 359.97438 * 4 3 2 6 6 N 1.48015 * 120.00121 * 180.02562 * 5 4 3 7 7 O 1.21797 * 119.99829 * 359.97438 * 6 5 4 8 8 O 1.21798 * 120.00285 * 180.02562 * 6 5 4 9 9 C 1.38221 * 119.99997 * 359.81772 * 5 4 3 10 10 C 1.38214 * 119.99977 * 180.02562 * 2 1 3 11 11 C 1.50700 * 119.99846 * 359.97438 * 10 2 1 12 12 H 1.09001 * 109.47024 * 324.98949 * 11 10 2 13 13 C 1.52991 * 109.47729 * 84.99648 * 11 10 2 14 14 N 1.46910 * 109.46795 * 204.99892 * 11 10 2 15 15 C 1.46902 * 110.99766 * 153.89372 * 14 11 10 16 16 H 1.08990 * 109.47403 * 32.66591 * 15 14 11 17 17 C 1.52996 * 109.46942 * 152.66980 * 15 14 11 18 18 C 1.50706 * 109.46783 * 272.66353 * 15 14 11 19 19 H 1.08000 * 120.00020 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99701 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00211 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99953 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46941 * 59.99884 * 22 20 18 24 24 H 1.48500 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.46966 * 300.00290 * 22 20 18 26 26 H 1.08995 * 109.47281 * 269.97860 * 1 2 3 27 27 H 1.09003 * 109.47114 * 29.98295 * 1 2 3 28 28 H 1.09007 * 109.46762 * 149.97864 * 1 2 3 29 29 H 1.08001 * 119.99930 * 359.97438 * 3 2 1 30 30 H 1.07991 * 119.99993 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00302 * 180.22763 * 9 5 4 32 32 H 1.08999 * 109.47088 * 56.66000 * 13 11 10 33 33 H 1.08995 * 109.47639 * 176.66152 * 13 11 10 34 34 H 1.08999 * 109.46999 * 296.66540 * 13 11 10 35 35 H 1.00896 * 110.99677 * 277.84661 * 14 11 10 36 36 H 1.09000 * 109.47736 * 180.60489 * 17 15 14 37 37 H 1.09002 * 109.47081 * 300.60784 * 17 15 14 38 38 H 1.09002 * 109.47538 * 60.60251 * 17 15 14 39 39 H 0.96996 * 120.00180 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 7 5.7519 0.0000 0.0028 7 8 6.3608 1.0548 0.0023 8 8 6.3609 -1.0548 0.0032 9 6 3.5806 -1.1970 0.0059 10 6 2.1981 -1.1970 -0.0005 11 6 1.4445 -2.5020 -0.0005 12 1 0.5342 -2.3959 0.5894 13 6 1.0800 -2.8806 -1.4373 14 7 2.2871 -3.5539 0.5843 15 6 1.4655 -4.6229 1.1676 16 1 0.5484 -4.7330 0.5891 17 6 2.2464 -5.9383 1.1410 18 6 1.1217 -4.2715 2.5922 19 1 1.4776 -3.3464 3.0212 20 6 0.3529 -5.1311 3.3479 21 7 -0.0800 -6.2578 2.8257 22 14 -0.0739 -4.6953 5.1135 23 1 -0.8326 -3.4189 5.1387 24 1 -0.9043 -5.7760 5.7032 25 1 1.1754 -4.5441 5.9018 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 4.1206 -2.1323 0.0105 32 1 1.9860 -2.9287 -2.0414 33 1 0.5874 -3.8529 -1.4431 34 1 0.4069 -2.1298 -1.8512 35 1 2.9299 -3.9242 -0.0997 36 1 1.6329 -6.7338 1.5640 37 1 2.5045 -6.1869 0.1116 38 1 3.1583 -5.8315 1.7285 39 1 -0.6212 -6.8623 3.3572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:24 Heat of formation + Delta-G solvation = 12.886975 kcal Electronic energy + Delta-G solvation = -21825.519726 eV Core-core repulsion = 18543.034295 eV Total energy + Delta-G solvation = -3282.485431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00404 -39.91964 -36.70161 -36.36378 -33.87556 -33.03755 -31.31409 -29.55968 -28.56722 -27.02446 -25.23231 -24.99752 -23.79097 -21.83797 -20.66315 -20.25365 -18.63330 -18.39420 -17.35213 -16.24489 -15.85115 -15.68726 -15.01278 -14.72445 -14.21276 -13.93570 -13.85841 -13.47867 -12.94609 -12.70396 -12.42781 -12.22655 -12.08207 -11.95449 -11.50234 -11.42563 -11.22008 -11.08929 -10.98495 -10.97243 -10.79872 -10.66402 -10.37322 -10.11519 -9.96190 -9.28695 -9.25219 -8.90661 -8.46800 -7.45910 -6.05481 -4.09511 -0.00021 1.07969 1.49689 1.59772 3.27753 3.33017 3.35359 3.36536 4.36600 4.43609 4.49850 4.66511 4.78162 4.87591 5.20594 5.25150 5.29746 5.42443 5.44652 5.51249 5.54568 5.66514 5.78722 5.84750 5.93938 6.07877 6.20769 6.23069 6.38930 6.49316 6.66317 6.68135 6.87883 6.94120 7.31245 7.65786 7.81524 7.82225 8.11648 8.26086 8.57970 8.97430 9.56115 11.00714 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.005049 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.944024 B = 5544.218646 C = 5830.451193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.031 4.031 3 C -0.125 4.125 4 C -0.065 4.065 5 C -0.057 4.057 6 N 0.034 4.966 7 O -0.178 6.178 8 O -0.160 6.160 9 C -0.025 4.025 10 C -0.055 4.055 11 C 0.123 3.877 12 H 0.103 0.897 13 C -0.177 4.177 14 N -0.681 5.681 15 C 0.214 3.786 16 H 0.006 0.994 17 C -0.145 4.145 18 C -0.496 4.496 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.158 0.842 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.320 0.680 36 H 0.090 0.910 37 H 0.006 0.994 38 H 0.036 0.964 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 12.187 -8.486 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.140 4.140 6 N 0.551 4.449 7 O -0.391 6.391 8 O -0.377 6.377 9 C -0.044 4.044 10 C -0.056 4.056 11 C 0.012 3.988 12 H 0.121 0.879 13 C -0.235 4.235 14 N -0.311 5.311 15 C 0.107 3.893 16 H 0.024 0.976 17 C -0.203 4.203 18 C -0.535 4.535 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.176 0.824 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.030 12.341 -7.816 14.608 hybrid contribution -0.066 -0.253 0.292 0.391 sum -0.095 12.089 -7.524 14.239 Atomic orbital electron populations 1.21038 0.89958 1.03643 1.03810 1.20258 0.97283 0.92327 0.93353 1.20962 0.92379 0.98444 1.02559 1.20891 0.94659 0.96733 0.96176 1.21118 0.78743 0.97212 1.16889 1.43660 1.03900 1.00245 0.97063 1.94485 1.69394 1.20905 1.54270 1.94551 1.69246 1.20655 1.53278 1.20946 0.94406 0.97014 0.92058 1.20039 0.92114 0.95815 0.97667 1.20450 0.96034 0.88413 0.93920 0.87872 1.22518 1.01589 1.02293 0.97144 1.60808 1.19985 1.15008 1.35272 1.19176 0.89895 0.85639 0.94546 0.97594 1.21970 1.00283 1.01411 0.96654 1.21122 1.30576 1.05305 0.96486 0.92199 1.24936 0.96035 0.95075 0.98310 1.69860 1.36406 1.10520 1.36785 0.86618 0.78381 0.77791 0.84941 1.20465 1.21369 1.20281 0.89578 0.90984 0.90067 0.84056 0.83606 0.82420 0.92821 0.91442 0.92510 0.86311 0.89187 0.97503 0.94487 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.22 36.01 0.33 -0.94 16 2 C -0.03 -0.38 5.88 -104.62 -0.62 -0.99 16 3 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 4 C -0.07 -0.79 9.56 -39.58 -0.38 -1.17 16 5 C -0.06 -0.84 6.85 -79.95 -0.55 -1.39 16 6 N 0.03 0.56 4.45 33.96 0.15 0.71 16 7 O -0.18 -2.90 18.45 -29.46 -0.54 -3.44 16 8 O -0.16 -2.82 18.45 -29.46 -0.54 -3.36 16 9 C -0.03 -0.38 8.83 -39.58 -0.35 -0.73 16 10 C -0.05 -0.79 5.06 -104.62 -0.53 -1.32 16 11 C 0.12 1.97 1.90 -68.86 -0.13 1.84 16 12 H 0.10 1.84 6.56 -51.93 -0.34 1.50 16 13 C -0.18 -2.39 8.97 37.15 0.33 -2.06 16 14 N -0.68 -13.03 5.02 -102.17 -0.51 -13.54 16 15 C 0.21 4.97 2.40 -68.86 -0.17 4.81 16 16 H 0.01 0.16 7.19 -51.93 -0.37 -0.21 16 17 C -0.14 -3.33 8.93 37.16 0.33 -3.00 16 18 C -0.50 -13.04 8.62 -34.44 -0.30 -13.34 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 21 N -0.90 -24.64 11.32 55.43 0.63 -24.02 16 22 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.08 0.83 5.40 -51.92 -0.28 0.55 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.15 1.49 7.61 -52.49 -0.40 1.09 16 31 H 0.16 2.52 6.47 -52.49 -0.34 2.18 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.00 7.51 -51.93 -0.39 0.61 16 34 H 0.06 0.65 6.84 -51.93 -0.36 0.29 16 35 H 0.32 5.61 7.53 -39.29 -0.30 5.31 16 36 H 0.09 2.30 6.08 -51.93 -0.32 1.98 16 37 H 0.01 0.12 8.11 -51.93 -0.42 -0.30 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -28.61 325.77 -8.59 -37.20 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.17 Total: 4.15 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.49 Total: -18.55 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.27 Total: -36.85 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -1.09 Total: -6.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.61 -8.59 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.089 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds