Wall clock time and date at job start Mon Mar 30 2020 23:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99941 * 2 1 4 4 C 1.38215 * 119.99982 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99942 * 359.97438 * 4 3 2 6 6 N 1.48015 * 120.00121 * 180.02562 * 5 4 3 7 7 O 1.21797 * 119.99829 * 359.97438 * 6 5 4 8 8 O 1.21798 * 120.00285 * 180.02562 * 6 5 4 9 9 C 1.38221 * 119.99997 * 359.81772 * 5 4 3 10 10 C 1.38214 * 119.99977 * 180.02562 * 2 1 3 11 11 C 1.50700 * 119.99846 * 359.97438 * 10 2 1 12 12 H 1.09001 * 109.47024 * 324.98949 * 11 10 2 13 13 C 1.52991 * 109.47729 * 84.99648 * 11 10 2 14 14 N 1.46910 * 109.46795 * 204.99892 * 11 10 2 15 15 C 1.46902 * 110.99766 * 153.89372 * 14 11 10 16 16 H 1.08990 * 109.47403 * 32.66591 * 15 14 11 17 17 C 1.52996 * 109.46942 * 152.66980 * 15 14 11 18 18 C 1.50706 * 109.46783 * 272.66353 * 15 14 11 19 19 H 1.08000 * 120.00020 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99701 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00211 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99953 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.46941 * 59.99884 * 22 20 18 24 24 H 1.48500 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.46966 * 300.00290 * 22 20 18 26 26 H 1.08995 * 109.47281 * 269.97860 * 1 2 3 27 27 H 1.09003 * 109.47114 * 29.98295 * 1 2 3 28 28 H 1.09007 * 109.46762 * 149.97864 * 1 2 3 29 29 H 1.08001 * 119.99930 * 359.97438 * 3 2 1 30 30 H 1.07991 * 119.99993 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00302 * 180.22763 * 9 5 4 32 32 H 1.08999 * 109.47088 * 56.66000 * 13 11 10 33 33 H 1.08995 * 109.47639 * 176.66152 * 13 11 10 34 34 H 1.08999 * 109.46999 * 296.66540 * 13 11 10 35 35 H 1.00896 * 110.99677 * 277.84661 * 14 11 10 36 36 H 1.09000 * 109.47736 * 180.60489 * 17 15 14 37 37 H 1.09002 * 109.47081 * 300.60784 * 17 15 14 38 38 H 1.09002 * 109.47538 * 60.60251 * 17 15 14 39 39 H 0.96996 * 120.00180 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 7 5.7519 0.0000 0.0028 7 8 6.3608 1.0548 0.0023 8 8 6.3609 -1.0548 0.0032 9 6 3.5806 -1.1970 0.0059 10 6 2.1981 -1.1970 -0.0005 11 6 1.4445 -2.5020 -0.0005 12 1 0.5342 -2.3959 0.5894 13 6 1.0800 -2.8806 -1.4373 14 7 2.2871 -3.5539 0.5843 15 6 1.4655 -4.6229 1.1676 16 1 0.5484 -4.7330 0.5891 17 6 2.2464 -5.9383 1.1410 18 6 1.1217 -4.2715 2.5922 19 1 1.4776 -3.3464 3.0212 20 6 0.3529 -5.1311 3.3479 21 7 -0.0800 -6.2578 2.8257 22 14 -0.0739 -4.6953 5.1135 23 1 -0.8326 -3.4189 5.1387 24 1 -0.9043 -5.7760 5.7032 25 1 1.1754 -4.5441 5.9018 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1326 0.0010 31 1 4.1206 -2.1323 0.0105 32 1 1.9860 -2.9287 -2.0414 33 1 0.5874 -3.8529 -1.4431 34 1 0.4069 -2.1298 -1.8512 35 1 2.9299 -3.9242 -0.0997 36 1 1.6329 -6.7338 1.5640 37 1 2.5045 -6.1869 0.1116 38 1 3.1583 -5.8315 1.7285 39 1 -0.6212 -6.8623 3.3572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:23 Heat of formation + Delta-G solvation = -2.338482 kcal Electronic energy + Delta-G solvation = -21826.179951 eV Core-core repulsion = 18543.034295 eV Total energy + Delta-G solvation = -3283.145657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.22756 -41.00294 -38.15872 -37.64349 -35.40080 -34.29252 -32.87177 -30.83262 -29.60784 -28.54732 -27.25903 -26.09028 -24.88589 -23.03470 -22.09897 -21.74015 -19.83473 -19.62593 -18.59175 -18.23436 -17.13918 -16.70745 -16.51776 -16.16832 -15.56300 -15.08135 -15.00025 -14.85793 -14.31678 -14.20340 -13.39974 -13.35411 -13.21385 -13.05884 -12.97001 -12.86325 -12.73432 -12.66148 -12.46540 -12.35162 -12.29305 -12.21292 -12.03111 -11.95049 -11.58175 -11.18828 -10.50749 -10.22270 -9.99229 -9.07393 -8.09212 -6.19964 -1.17141 0.07875 0.35634 0.44580 1.39842 1.42436 1.49242 2.33230 2.42180 3.17637 3.34219 3.48039 3.59151 3.75984 3.91020 4.06828 4.24565 4.29143 4.35046 4.57469 4.66590 4.76883 4.78643 4.79276 4.87502 4.90772 4.96437 5.02775 5.08425 5.14191 5.18147 5.27188 5.42045 5.48205 5.62716 5.71378 5.83561 6.30575 6.46352 6.53546 6.88272 6.92880 7.49249 8.94797 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016997 B = 0.005049 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.944024 B = 5544.218646 C = 5830.451193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.025 4.025 3 C -0.108 4.108 4 C -0.057 4.057 5 C -0.074 4.074 6 N 0.035 4.965 7 O -0.161 6.161 8 O -0.211 6.211 9 C -0.040 4.040 10 C -0.071 4.071 11 C 0.126 3.874 12 H 0.083 0.917 13 C -0.168 4.168 14 N -0.686 5.686 15 C 0.222 3.778 16 H -0.015 1.015 17 C -0.136 4.136 18 C -0.508 4.508 19 H 0.047 0.953 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.950 3.050 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.280 1.280 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.188 0.812 30 H 0.170 0.830 31 H 0.139 0.861 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.328 0.672 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 15.022 -8.867 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.025 4.025 3 C -0.126 4.126 4 C -0.076 4.076 5 C -0.158 4.158 6 N 0.549 4.451 7 O -0.381 6.381 8 O -0.416 6.416 9 C -0.060 4.060 10 C -0.072 4.072 11 C 0.016 3.984 12 H 0.101 0.899 13 C -0.227 4.227 14 N -0.317 5.317 15 C 0.114 3.886 16 H 0.003 0.997 17 C -0.195 4.195 18 C -0.547 4.547 19 H 0.065 0.935 20 C -0.185 4.185 21 N -0.559 5.559 22 Si 0.776 3.224 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.206 1.206 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.205 0.795 30 H 0.188 0.812 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.101 15.094 -8.210 17.218 hybrid contribution 0.227 -0.992 0.376 1.085 sum -0.874 14.102 -7.834 16.156 Atomic orbital electron populations 1.21130 0.88209 1.05158 1.04041 1.20588 0.98559 0.91861 0.91530 1.21439 0.91646 0.99505 1.00042 1.21308 0.95451 0.96389 0.94403 1.21281 0.77443 0.98230 1.18814 1.43934 1.04765 0.99904 0.96541 1.94438 1.70030 1.20728 1.52901 1.94557 1.70029 1.21042 1.56006 1.20814 0.94818 0.96812 0.93548 1.19902 0.91704 0.96001 0.99637 1.20379 0.94941 0.88344 0.94767 0.89874 1.22411 1.02357 1.02140 0.95748 1.60646 1.20170 1.14337 1.36535 1.18905 0.89605 0.86877 0.93227 0.99696 1.21814 0.99227 1.00567 0.97858 1.21356 1.30554 1.04783 0.98024 0.93495 1.25602 0.96100 0.95062 1.01702 1.69975 1.36866 1.11156 1.37916 0.85740 0.77964 0.77894 0.80773 1.19536 1.20924 1.20588 0.89812 0.87414 0.90704 0.79516 0.81249 0.84302 0.92004 0.93070 0.89912 0.85431 0.91800 0.94969 0.95226 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.22 71.24 0.66 -1.45 16 2 C -0.02 -0.51 5.88 -19.86 -0.12 -0.63 16 3 C -0.11 -1.78 9.70 22.27 0.22 -1.56 16 4 C -0.06 -1.17 9.56 22.27 0.21 -0.96 16 5 C -0.07 -2.12 6.85 36.38 0.25 -1.87 16 6 N 0.04 1.15 4.45 -46.46 -0.21 0.95 16 7 O -0.16 -5.06 18.45 18.89 0.35 -4.71 16 8 O -0.21 -7.72 18.45 18.89 0.35 -7.37 16 9 C -0.04 -1.23 8.83 22.27 0.20 -1.04 16 10 C -0.07 -1.98 5.06 -19.87 -0.10 -2.08 16 11 C 0.13 4.04 1.90 44.16 0.08 4.13 16 12 H 0.08 2.99 6.56 -2.39 -0.02 2.98 16 13 C -0.17 -4.44 8.97 71.98 0.65 -3.79 16 14 N -0.69 -26.90 5.02 -477.16 -2.39 -29.29 16 15 C 0.22 10.57 2.40 44.17 0.11 10.68 16 16 H -0.01 -0.74 7.19 -2.39 -0.02 -0.76 16 17 C -0.14 -6.41 8.93 71.98 0.64 -5.76 16 18 C -0.51 -27.26 8.62 25.60 0.22 -27.04 16 19 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 20 C 0.01 0.75 5.30 84.65 0.45 1.19 16 21 N -0.92 -51.38 11.32 21.45 0.24 -51.13 16 22 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 1.01 8.09 -2.39 -0.02 0.99 16 28 H 0.07 1.33 5.40 -2.38 -0.01 1.32 16 29 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.17 2.71 7.61 -2.92 -0.02 2.69 16 31 H 0.14 4.67 6.47 -2.91 -0.02 4.65 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.51 7.51 -2.39 -0.02 1.49 16 34 H 0.08 1.74 6.84 -2.39 -0.02 1.72 16 35 H 0.33 11.81 7.53 -89.70 -0.68 11.13 16 36 H 0.06 3.35 6.08 -2.39 -0.01 3.33 16 37 H 0.03 1.30 8.11 -2.39 -0.02 1.28 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -63.54 325.77 4.22 -59.31 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.40 Total: 17.25 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 3.46 Total: -30.19 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.36 Total: -79.48 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.70 Total: -12.09 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -63.54 4.22 -59.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.974 kcal (2) G-P(sol) polarization free energy of solvation -63.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds