Wall clock time and date at job start Tue Mar 31 2020 01:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30175 * 126.80420 * 2 1 4 4 O 1.20918 * 111.60670 * 180.25414 * 3 2 1 5 5 C 1.34043 * 111.56618 * 359.74565 * 4 3 2 6 6 C 1.50701 * 126.77958 * 179.97438 * 5 4 3 7 7 C 1.35449 * 106.44440 * 0.02562 * 5 4 3 8 8 C 1.50709 * 128.00682 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46830 * 0.02562 * 8 7 5 10 10 C 1.52999 * 109.46847 * 119.99840 * 8 7 5 11 11 C 1.50701 * 109.47064 * 240.00164 * 8 7 5 12 12 O 1.21287 * 119.99849 * 0.02562 * 11 8 7 13 13 N 1.34769 * 119.99692 * 180.02562 * 11 8 7 14 14 C 1.37098 * 120.00035 * 180.02562 * 13 11 8 15 15 H 1.08002 * 119.99658 * 224.17772 * 14 13 11 16 16 C 1.38945 * 120.00206 * 44.17931 * 14 13 11 17 17 N 1.31414 * 120.00185 * 18.05046 * 16 14 13 18 18 Si 1.86794 * 120.00069 * 198.05830 * 16 14 13 19 19 H 1.48508 * 109.47108 * 269.99316 * 18 16 14 20 20 H 1.48501 * 109.47635 * 29.99625 * 18 16 14 21 21 H 1.48503 * 109.47371 * 149.99633 * 18 16 14 22 22 C 1.46505 * 120.00189 * 359.97438 * 13 11 8 23 23 C 1.53002 * 117.49972 * 189.28304 * 22 13 11 24 24 C 1.52992 * 60.00176 * 252.51606 * 23 22 13 25 25 H 1.08994 * 109.46768 * 270.16628 * 1 2 3 26 26 H 1.09008 * 109.46742 * 30.16259 * 1 2 3 27 27 H 1.08997 * 109.47299 * 150.16366 * 1 2 3 28 28 H 1.08992 * 109.47399 * 270.00071 * 6 5 4 29 29 H 1.09002 * 109.46778 * 30.00460 * 6 5 4 30 30 H 1.08996 * 109.47113 * 149.99715 * 6 5 4 31 31 H 1.09002 * 109.46704 * 60.00435 * 10 8 7 32 32 H 1.09005 * 109.46927 * 179.97438 * 10 8 7 33 33 H 1.08992 * 109.47737 * 300.00150 * 10 8 7 34 34 H 0.96991 * 120.00586 * 174.90782 * 17 16 14 35 35 H 1.08994 * 115.55450 * 334.99853 * 22 13 11 36 36 H 1.08994 * 117.49831 * 0.02562 * 23 22 13 37 37 H 1.09003 * 117.49652 * 145.02119 * 23 22 13 38 38 H 1.09007 * 117.50185 * 252.51211 * 24 23 22 39 39 H 1.09000 * 117.51829 * 107.48593 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0035 6 6 4.9021 -1.3697 -0.0089 7 6 2.3540 -1.1320 0.0026 8 6 1.9590 -2.5864 0.0061 9 1 2.8555 -3.2063 0.0033 10 6 1.1349 -2.8881 1.2594 11 6 1.1363 -2.8864 -1.2204 12 8 0.8950 -2.0060 -2.0190 13 7 0.6689 -4.1330 -1.4298 14 6 -0.0790 -4.4062 -2.5459 15 1 -0.9744 -5.0043 -2.4627 16 6 0.3148 -3.9134 -3.7839 17 7 1.5497 -3.5019 -3.9647 18 14 -0.9110 -3.8359 -5.1912 19 1 -0.8636 -5.1059 -5.9595 20 1 -2.2782 -3.6376 -4.6466 21 1 -0.5657 -2.7026 -6.0866 22 6 0.9610 -5.1965 -0.4655 23 6 0.5937 -6.6284 -0.8601 24 6 -0.2279 -5.8926 0.2001 25 1 -0.3633 0.0030 1.0276 26 1 -0.3633 0.8886 -0.5164 27 1 -0.3634 -0.8914 -0.5113 28 1 5.2102 -1.5553 -1.0378 29 1 5.6686 -0.7852 0.5000 30 1 4.7677 -2.3202 0.5072 31 1 0.2384 -2.2681 1.2626 32 1 0.8488 -3.9399 1.2617 33 1 1.7299 -2.6711 2.1465 34 1 1.8452 -3.2274 -4.8468 35 1 1.8606 -5.0542 0.1333 36 1 0.1351 -6.7792 -1.8374 37 1 1.2519 -7.4285 -0.5212 38 1 -0.1103 -6.2084 1.2368 39 1 -1.2273 -5.5590 -0.0791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604548344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:52 Heat of formation + Delta-G solvation = 61.608153 kcal Electronic energy + Delta-G solvation = -23028.639231 eV Core-core repulsion = 19748.266508 eV Total energy + Delta-G solvation = -3280.372723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -44.36515 -38.98092 -36.37315 -34.92090 -33.27057 -32.73225 -31.69425 -30.44035 -28.18167 -27.23342 -25.19318 -24.07529 -21.83933 -21.62611 -20.82535 -19.74766 -19.03518 -17.19097 -16.64347 -16.13428 -15.94487 -14.90189 -14.44758 -14.21827 -13.86842 -13.58662 -13.23656 -13.07565 -12.77967 -12.72658 -12.59562 -12.25031 -12.13782 -12.01458 -11.53358 -11.37607 -11.09720 -11.00311 -10.88941 -10.84471 -10.63304 -10.27076 -10.10069 -9.92578 -9.71711 -9.24751 -8.77562 -8.59047 -7.94976 -7.01639 -6.13077 -3.88601 1.97472 2.80011 3.27143 3.37878 3.39227 3.59776 4.08732 4.24308 4.65818 4.77098 4.87633 4.95773 5.16935 5.33198 5.38955 5.54236 5.58903 5.63455 5.65593 5.70007 5.75305 5.79097 5.95561 5.95961 6.03228 6.12371 6.16310 6.19665 6.28790 6.36028 6.43142 6.53609 6.61497 6.71924 6.81643 6.92933 7.60191 8.25655 8.82133 9.04573 9.14846 9.64334 10.27895 10.95739 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.007488 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.417940 B = 3738.399705 C = 4461.191354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.055 3.945 3 N -0.383 5.383 4 O 0.085 5.915 5 C -0.048 4.048 6 C -0.067 4.067 7 C -0.152 4.152 8 C -0.033 4.033 9 H 0.087 0.913 10 C -0.149 4.149 11 C 0.491 3.509 12 O -0.520 6.520 13 N -0.426 5.426 14 C -0.349 4.349 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.832 5.832 18 Si 0.910 3.090 19 H -0.282 1.282 20 H -0.271 1.271 21 H -0.285 1.285 22 C 0.076 3.924 23 C -0.178 4.178 24 C -0.208 4.208 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 -1.595 10.399 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 N -0.092 5.092 4 O 0.023 5.977 5 C -0.111 4.111 6 C -0.125 4.125 7 C -0.156 4.156 8 C -0.056 4.056 9 H 0.105 0.895 10 C -0.206 4.206 11 C 0.278 3.722 12 O -0.396 6.396 13 N -0.147 5.147 14 C -0.475 4.475 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.465 5.465 18 Si 0.737 3.263 19 H -0.209 1.209 20 H -0.196 1.196 21 H -0.210 1.210 22 C -0.030 4.030 23 C -0.216 4.216 24 C -0.247 4.247 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.958 0.363 9.833 10.275 hybrid contribution -0.468 -0.884 -0.866 1.323 sum 2.490 -0.521 8.967 9.320 Atomic orbital electron populations 1.20254 0.86455 1.04853 1.01778 1.23206 0.98693 0.88109 1.00342 1.73716 0.89313 1.24135 1.22009 1.84702 1.21781 1.22354 1.68898 1.24035 0.98014 0.83941 1.05087 1.20240 0.90038 0.98174 1.04014 1.20452 0.91329 0.96603 1.07214 1.19583 0.99630 0.89624 0.96717 0.89476 1.22015 0.99889 1.03383 0.95335 1.19486 0.83568 0.82970 0.86178 1.90545 1.58282 1.44905 1.45908 1.42713 1.48600 1.03975 1.19368 1.18804 1.06056 1.38178 0.84510 0.90570 1.25212 0.95121 0.95115 0.98121 1.69808 1.15524 1.38470 1.22673 0.86251 0.81439 0.77384 0.81231 1.20887 1.19610 1.21038 1.21746 0.96150 0.88963 0.96192 1.23114 1.03423 0.94602 1.00412 1.23324 0.98062 1.06611 0.96694 0.91399 0.91379 0.88437 0.89574 0.90453 0.89485 0.92233 0.90273 0.92940 0.92639 0.87777 0.87490 0.89914 0.89813 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 8.93 36.01 0.32 -1.07 16 2 C 0.06 1.11 6.69 -82.10 -0.55 0.56 16 3 N -0.38 -7.77 12.07 33.42 0.40 -7.37 16 4 O 0.09 1.60 11.20 17.17 0.19 1.79 16 5 C -0.05 -0.83 7.49 -35.30 -0.26 -1.09 16 6 C -0.07 -0.84 10.17 36.01 0.37 -0.48 16 7 C -0.15 -2.94 4.47 -104.42 -0.47 -3.41 16 8 C -0.03 -0.62 2.23 -92.92 -0.21 -0.83 16 9 H 0.09 1.51 6.56 -51.93 -0.34 1.17 16 10 C -0.15 -2.29 8.71 37.16 0.32 -1.96 16 11 C 0.49 11.77 5.64 -10.99 -0.06 11.71 16 12 O -0.52 -14.62 11.71 5.55 0.07 -14.55 16 13 N -0.43 -10.05 2.85 -107.73 -0.31 -10.36 16 14 C -0.35 -9.16 7.72 -14.93 -0.12 -9.28 16 15 H 0.08 1.95 7.53 -52.49 -0.40 1.55 16 16 C 0.08 2.07 4.39 -17.47 -0.08 1.99 16 17 N -0.83 -24.20 11.72 55.50 0.65 -23.55 16 18 Si 0.91 21.73 29.59 -169.99 -5.03 16.70 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.08 1.41 4.33 -67.93 -0.29 1.12 16 23 C -0.18 -3.04 9.82 -26.73 -0.26 -3.30 16 24 C -0.21 -3.31 9.48 -26.73 -0.25 -3.56 16 25 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 26 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 27 H 0.10 2.01 5.79 -51.93 -0.30 1.71 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.95 7.39 -51.93 -0.38 0.56 16 31 H 0.06 0.94 6.75 -51.93 -0.35 0.59 16 32 H 0.08 1.15 4.43 -51.93 -0.23 0.92 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.43 8.32 -40.82 -0.34 7.09 16 35 H 0.10 1.71 6.12 -51.93 -0.32 1.39 16 36 H 0.11 2.07 6.91 -51.93 -0.36 1.71 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -32.89 315.44 -6.01 -38.90 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.19 Total: 3.28 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.54 Total: -9.60 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.75 Total: -41.28 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.26 Total: -12.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.89 -6.01 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604548344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.504 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds