Wall clock time and date at job start Tue Mar 31 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30175 * 126.80420 * 2 1 4 4 O 1.20918 * 111.60670 * 180.25414 * 3 2 1 5 5 C 1.34043 * 111.56618 * 359.74565 * 4 3 2 6 6 C 1.50701 * 126.77958 * 179.97438 * 5 4 3 7 7 C 1.35449 * 106.44440 * 0.02562 * 5 4 3 8 8 C 1.50709 * 128.00682 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46830 * 0.02562 * 8 7 5 10 10 C 1.52999 * 109.46847 * 119.99840 * 8 7 5 11 11 C 1.50701 * 109.47064 * 240.00164 * 8 7 5 12 12 O 1.21287 * 119.99849 * 0.02562 * 11 8 7 13 13 N 1.34769 * 119.99692 * 180.02562 * 11 8 7 14 14 C 1.37098 * 120.00035 * 180.02562 * 13 11 8 15 15 H 1.08002 * 119.99658 * 224.17772 * 14 13 11 16 16 C 1.38945 * 120.00206 * 44.17931 * 14 13 11 17 17 N 1.31414 * 120.00185 * 18.05046 * 16 14 13 18 18 Si 1.86794 * 120.00069 * 198.05830 * 16 14 13 19 19 H 1.48508 * 109.47108 * 269.99316 * 18 16 14 20 20 H 1.48501 * 109.47635 * 29.99625 * 18 16 14 21 21 H 1.48503 * 109.47371 * 149.99633 * 18 16 14 22 22 C 1.46505 * 120.00189 * 359.97438 * 13 11 8 23 23 C 1.53002 * 117.49972 * 189.28304 * 22 13 11 24 24 C 1.52992 * 60.00176 * 252.51606 * 23 22 13 25 25 H 1.08994 * 109.46768 * 270.16628 * 1 2 3 26 26 H 1.09008 * 109.46742 * 30.16259 * 1 2 3 27 27 H 1.08997 * 109.47299 * 150.16366 * 1 2 3 28 28 H 1.08992 * 109.47399 * 270.00071 * 6 5 4 29 29 H 1.09002 * 109.46778 * 30.00460 * 6 5 4 30 30 H 1.08996 * 109.47113 * 149.99715 * 6 5 4 31 31 H 1.09002 * 109.46704 * 60.00435 * 10 8 7 32 32 H 1.09005 * 109.46927 * 179.97438 * 10 8 7 33 33 H 1.08992 * 109.47737 * 300.00150 * 10 8 7 34 34 H 0.96991 * 120.00586 * 174.90782 * 17 16 14 35 35 H 1.08994 * 115.55450 * 334.99853 * 22 13 11 36 36 H 1.08994 * 117.49831 * 0.02562 * 23 22 13 37 37 H 1.09003 * 117.49652 * 145.02119 * 23 22 13 38 38 H 1.09007 * 117.50185 * 252.51211 * 24 23 22 39 39 H 1.09000 * 117.51829 * 107.48593 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0035 6 6 4.9021 -1.3697 -0.0089 7 6 2.3540 -1.1320 0.0026 8 6 1.9590 -2.5864 0.0061 9 1 2.8555 -3.2063 0.0033 10 6 1.1349 -2.8881 1.2594 11 6 1.1363 -2.8864 -1.2204 12 8 0.8950 -2.0060 -2.0190 13 7 0.6689 -4.1330 -1.4298 14 6 -0.0790 -4.4062 -2.5459 15 1 -0.9744 -5.0043 -2.4627 16 6 0.3148 -3.9134 -3.7839 17 7 1.5497 -3.5019 -3.9647 18 14 -0.9110 -3.8359 -5.1912 19 1 -0.8636 -5.1059 -5.9595 20 1 -2.2782 -3.6376 -4.6466 21 1 -0.5657 -2.7026 -6.0866 22 6 0.9610 -5.1965 -0.4655 23 6 0.5937 -6.6284 -0.8601 24 6 -0.2279 -5.8926 0.2001 25 1 -0.3633 0.0030 1.0276 26 1 -0.3633 0.8886 -0.5164 27 1 -0.3634 -0.8914 -0.5113 28 1 5.2102 -1.5553 -1.0378 29 1 5.6686 -0.7852 0.5000 30 1 4.7677 -2.3202 0.5072 31 1 0.2384 -2.2681 1.2626 32 1 0.8488 -3.9399 1.2617 33 1 1.7299 -2.6711 2.1465 34 1 1.8452 -3.2274 -4.8468 35 1 1.8606 -5.0542 0.1333 36 1 0.1351 -6.7792 -1.8374 37 1 1.2519 -7.4285 -0.5212 38 1 -0.1103 -6.2084 1.2368 39 1 -1.2273 -5.5590 -0.0791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604548344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:50 Heat of formation + Delta-G solvation = 41.300449 kcal Electronic energy + Delta-G solvation = -23029.519839 eV Core-core repulsion = 19748.266508 eV Total energy + Delta-G solvation = -3281.253331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.82088 -40.65322 -37.90587 -36.48328 -34.70842 -34.56424 -33.20257 -32.11520 -29.64428 -28.43783 -27.06528 -25.50451 -23.38266 -22.97922 -22.37980 -21.20478 -20.66362 -18.69947 -18.27926 -17.83564 -17.42885 -16.71755 -16.14249 -15.70754 -15.39467 -15.09691 -14.72528 -14.42960 -14.22759 -14.01701 -13.90455 -13.64249 -13.59107 -13.37471 -13.10555 -12.99525 -12.74530 -12.60009 -12.52042 -12.33554 -12.18946 -12.09095 -11.64908 -11.43533 -11.12283 -10.74377 -10.64616 -10.06361 -9.72635 -8.86867 -8.17632 -5.93683 0.58249 1.30393 1.35049 1.41471 1.47316 2.27870 2.30491 2.46402 3.10642 3.17130 3.33915 3.43066 3.65742 3.88582 4.03945 4.16848 4.27070 4.33533 4.36481 4.44502 4.50426 4.59535 4.60405 4.70087 4.72095 4.78882 4.96803 4.97101 5.03626 5.08765 5.14912 5.22063 5.28402 5.35282 5.45073 5.52212 5.56005 6.24162 7.08838 7.28259 7.39040 7.77233 8.44826 8.90280 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.007488 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.417940 B = 3738.399705 C = 4461.191354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.037 3.963 3 N -0.406 5.406 4 O 0.082 5.918 5 C -0.037 4.037 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.020 4.020 9 H 0.105 0.895 10 C -0.142 4.142 11 C 0.480 3.520 12 O -0.573 6.573 13 N -0.442 5.442 14 C -0.349 4.349 15 H 0.075 0.925 16 C 0.026 3.974 17 N -0.869 5.869 18 Si 0.960 3.040 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.299 1.299 22 C 0.050 3.950 23 C -0.179 4.179 24 C -0.180 4.180 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -3.133 12.809 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 N -0.115 5.115 4 O 0.021 5.979 5 C -0.100 4.100 6 C -0.125 4.125 7 C -0.185 4.185 8 C -0.042 4.042 9 H 0.123 0.877 10 C -0.199 4.199 11 C 0.269 3.731 12 O -0.454 6.454 13 N -0.162 5.162 14 C -0.477 4.477 15 H 0.093 0.907 16 C -0.180 4.180 17 N -0.504 5.504 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.226 1.226 22 C -0.055 4.055 23 C -0.217 4.217 24 C -0.219 4.219 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.705 -1.227 12.270 12.876 hybrid contribution -0.717 -0.436 -1.557 1.769 sum 2.988 -1.663 10.713 11.246 Atomic orbital electron populations 1.20188 0.85966 1.03277 1.03246 1.23555 0.99456 0.88707 1.00425 1.73690 0.89888 1.24678 1.23291 1.84663 1.21226 1.23328 1.68733 1.24870 0.99411 0.83319 1.02428 1.20515 0.88403 0.99004 1.04565 1.20674 0.92055 0.96808 1.09006 1.19480 0.99718 0.89581 0.95438 0.87705 1.21996 0.99412 1.03778 0.94683 1.20390 0.83228 0.82411 0.87070 1.90508 1.60232 1.46509 1.48119 1.42913 1.48364 1.05445 1.19514 1.18991 1.06296 1.36905 0.85480 0.90724 1.25903 0.96255 0.95381 1.00457 1.69914 1.17077 1.40954 1.22482 0.85466 0.79644 0.77400 0.78924 1.18993 1.19377 1.22597 1.22068 0.98748 0.88265 0.96413 1.23160 1.04101 0.94690 0.99721 1.23339 0.95951 1.04110 0.98496 0.88354 0.91650 0.91120 0.89849 0.87257 0.87254 0.93327 0.89187 0.89878 0.93522 0.84962 0.90520 0.86560 0.85528 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.57 8.93 71.24 0.64 -1.94 16 2 C 0.04 1.48 6.69 43.58 0.29 1.77 16 3 N -0.41 -16.47 12.07 -49.56 -0.60 -17.06 16 4 O 0.08 3.02 11.20 71.61 0.80 3.82 16 5 C -0.04 -1.22 7.49 25.04 0.19 -1.04 16 6 C -0.07 -1.49 10.17 71.24 0.72 -0.77 16 7 C -0.18 -6.84 4.47 -19.73 -0.09 -6.92 16 8 C -0.02 -0.71 2.23 -12.28 -0.03 -0.74 16 9 H 0.11 3.32 6.56 -2.39 -0.02 3.30 16 10 C -0.14 -3.93 8.71 71.98 0.63 -3.30 16 11 C 0.48 23.07 5.64 87.66 0.49 23.57 16 12 O -0.57 -33.28 11.71 -3.05 -0.04 -33.31 16 13 N -0.44 -20.74 2.85 -613.14 -1.75 -22.48 16 14 C -0.35 -18.60 7.72 84.04 0.65 -17.95 16 15 H 0.08 3.88 7.53 -2.91 -0.02 3.86 16 16 C 0.03 1.47 4.39 84.92 0.37 1.85 16 17 N -0.87 -52.15 11.72 21.66 0.25 -51.90 16 18 Si 0.96 45.80 29.59 68.60 2.03 47.83 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 22 C 0.05 1.73 4.33 44.99 0.19 1.93 16 23 C -0.18 -5.68 9.82 30.59 0.30 -5.38 16 24 C -0.18 -5.13 9.48 30.59 0.29 -4.84 16 25 H 0.10 2.92 8.11 -2.39 -0.02 2.90 16 26 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.07 3.02 5.79 -2.39 -0.01 3.00 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.94 7.39 -2.39 -0.02 1.92 16 31 H 0.05 1.45 6.75 -2.39 -0.02 1.43 16 32 H 0.09 2.27 4.43 -2.38 -0.01 2.26 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.26 15.02 8.32 -92.72 -0.77 14.25 16 35 H 0.13 3.81 6.12 -2.39 -0.01 3.79 16 36 H 0.08 2.92 6.91 -2.39 -0.02 2.90 16 37 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -75.12 315.44 6.43 -68.70 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.07 Total: 18.17 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.65 Total: -13.76 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -2.09 Total: -91.45 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: 0.77 Total: -29.49 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.12 6.43 -68.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604548344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.999 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds