Wall clock time and date at job start Tue Mar 31 2020 00:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34515 * 125.78941 * 2 1 4 4 C 1.41383 * 106.84319 * 180.29627 * 3 2 1 5 5 C 1.34519 * 106.84054 * 359.57508 * 4 3 2 6 6 C 1.50696 * 125.78987 * 180.11493 * 5 4 3 7 7 N 1.46901 * 109.46919 * 90.34364 * 6 5 4 8 8 C 1.46897 * 111.00157 * 169.99840 * 7 6 5 9 9 C 1.50699 * 109.47446 * 283.97703 * 8 7 6 10 10 O 1.21301 * 119.99813 * 4.48363 * 9 8 7 11 11 N 1.34778 * 120.00476 * 184.48276 * 9 8 7 12 12 C 1.37096 * 120.00080 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00171 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00126 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00292 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46980 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47280 * 120.00385 * 16 14 12 19 19 H 1.48506 * 109.47243 * 240.00522 * 16 14 12 20 20 C 1.46896 * 110.99861 * 293.94924 * 7 6 5 21 21 C 1.53003 * 117.50102 * 247.90204 * 20 7 6 22 22 C 1.53001 * 60.00001 * 252.50923 * 21 20 7 23 23 O 1.34306 * 108.41709 * 0.42691 * 5 4 3 24 24 H 1.09006 * 109.46830 * 90.00129 * 1 2 3 25 25 H 1.08998 * 109.46972 * 209.99942 * 1 2 3 26 26 H 1.08997 * 109.47347 * 330.00302 * 1 2 3 27 27 H 1.08003 * 126.58131 * 0.03518 * 3 2 1 28 28 H 1.07997 * 126.57946 * 179.73063 * 4 3 2 29 29 H 1.09005 * 109.46985 * 210.33339 * 6 5 4 30 30 H 1.08990 * 109.47257 * 330.34274 * 6 5 4 31 31 H 1.09006 * 109.47154 * 43.97781 * 8 7 6 32 32 H 1.08999 * 109.47647 * 163.97352 * 8 7 6 33 33 H 0.96996 * 119.99718 * 359.97438 * 11 9 8 34 34 H 0.97002 * 119.99430 * 179.97438 * 15 14 12 35 35 H 1.09001 * 115.55081 * 33.61228 * 20 7 6 36 36 H 1.08994 * 117.49643 * 0.02562 * 21 20 7 37 37 H 1.09004 * 117.49890 * 145.02226 * 21 20 7 38 38 H 1.08998 * 117.49766 * 252.50254 * 22 21 20 39 39 H 1.09002 * 117.49517 * 107.48929 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 3.5815 -0.7122 -0.0013 6 6 4.7707 -1.6377 -0.0030 7 7 5.1583 -1.9394 1.3814 8 6 6.1554 -3.0172 1.4260 9 6 5.4768 -4.3399 1.1790 10 8 4.2957 -4.3737 0.9044 11 7 6.1820 -5.4854 1.2630 12 6 5.5645 -6.6886 1.0388 13 1 4.5127 -6.7188 0.7951 14 6 6.2917 -7.8695 1.1249 15 7 7.5714 -7.8329 1.4218 16 14 5.4501 -9.5091 0.8200 17 1 4.0167 -9.2792 0.5077 18 1 6.1027 -10.1953 -0.3238 19 1 5.5618 -10.3563 2.0346 20 6 5.6530 -0.7362 2.0636 21 6 7.1374 -0.6927 2.4319 22 6 6.0832 -0.8791 3.5250 23 8 2.2925 -1.0894 -0.0008 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9665 2.1205 0.0005 28 1 4.5211 1.2434 -0.0130 29 1 4.5102 -2.5630 -0.5171 30 1 5.6035 -1.1583 -0.5172 31 1 6.9095 -2.8467 0.6576 32 1 6.6321 -3.0310 2.4061 33 1 7.1265 -5.4583 1.4822 34 1 8.0789 -8.6573 1.4823 35 1 5.1800 0.2001 1.7676 36 1 7.7470 -1.5567 2.1675 37 1 7.6413 0.2724 2.3779 38 1 5.8937 -0.0367 4.1902 39 1 5.9993 -1.8659 3.9801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:22 Heat of formation + Delta-G solvation = 18.256299 kcal Electronic energy + Delta-G solvation = -21535.375726 eV Core-core repulsion = 18253.123126 eV Total energy + Delta-G solvation = -3282.252600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.38838 -39.21213 -37.45033 -34.26602 -33.64395 -32.98575 -31.76943 -31.18174 -28.77296 -26.40974 -24.35990 -23.94998 -22.28988 -21.53036 -20.48776 -19.97046 -18.89825 -17.82104 -17.02810 -16.30719 -16.03541 -15.36724 -14.97021 -14.62505 -14.13343 -13.93096 -13.86227 -13.64389 -13.28984 -13.02600 -12.86086 -12.68448 -12.28462 -12.23400 -11.91891 -11.50243 -11.43725 -11.37515 -11.17453 -10.99585 -10.69994 -10.32610 -10.23846 -10.19934 -9.69445 -9.47995 -8.44372 -8.13185 -7.94103 -7.78859 -6.39689 -3.80157 1.86890 2.69368 3.10439 3.17924 3.28446 3.35937 3.81103 3.92378 4.06467 4.27036 4.72153 4.91477 4.99382 5.01441 5.07146 5.14396 5.22513 5.23086 5.34579 5.41846 5.47462 5.63454 5.66097 5.70751 5.73842 5.87980 5.93969 5.99335 6.05808 6.07818 6.21973 6.28334 6.36235 6.68461 7.15870 7.24330 7.46045 7.57788 8.08653 8.64182 9.20810 9.56591 10.08751 10.78243 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.004452 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.270833 B = 6287.940052 C = 7489.690897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.216 4.216 4 C -0.220 4.220 5 C 0.024 3.976 6 C 0.132 3.868 7 N -0.478 5.478 8 C 0.041 3.959 9 C 0.442 3.558 10 O -0.573 6.573 11 N -0.565 5.565 12 C -0.296 4.296 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.928 3.072 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.019 3.981 21 C -0.225 4.225 22 C -0.172 4.172 23 O -0.156 6.156 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.391 0.609 34 H 0.270 0.730 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 17.154 -0.937 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.235 4.235 4 C -0.240 4.240 5 C -0.028 4.028 6 C 0.006 3.994 7 N -0.200 5.200 8 C -0.090 4.090 9 C 0.227 3.773 10 O -0.456 6.456 11 N -0.203 5.203 12 C -0.426 4.426 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.091 4.091 21 C -0.264 4.264 22 C -0.210 4.210 23 O -0.051 6.051 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.224 0.776 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.889 16.472 -0.876 17.205 hybrid contribution 1.159 -0.327 -0.255 1.231 sum -3.730 16.145 -1.131 16.609 Atomic orbital electron populations 1.20262 0.85548 1.03881 1.03197 1.22430 0.94068 0.84483 1.06085 1.21440 0.92724 0.98980 1.10392 1.21488 0.97953 0.93777 1.10778 1.22217 0.83186 0.93663 1.03719 1.20543 0.89990 0.98857 0.90037 1.61287 1.39224 1.04752 1.14748 1.22008 0.93134 0.91376 1.02433 1.19760 0.88005 0.84685 0.84844 1.90548 1.15596 1.86745 1.52698 1.41854 1.11750 1.04903 1.61751 1.19748 0.96407 0.82230 1.44209 0.87870 1.25244 0.95533 0.99770 0.97405 1.69623 1.06901 1.28963 1.48960 0.85815 0.79493 0.81297 0.77841 1.19224 1.20792 1.20773 1.22835 0.94288 0.94658 0.97293 1.23629 0.93551 1.03399 1.05827 1.23058 1.02737 1.03426 0.91753 1.84087 1.16320 1.34473 1.70230 0.90394 0.90464 0.89708 0.83968 0.83935 0.87268 0.91898 0.92591 0.88764 0.77559 0.91977 0.85928 0.88116 0.89010 0.88652 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.00 0.38 -0.34 16 2 C -0.02 -0.28 7.32 -35.63 -0.26 -0.54 16 3 C -0.22 -2.79 10.81 -39.70 -0.43 -3.22 16 4 C -0.22 -3.00 9.22 -39.70 -0.37 -3.37 16 5 C 0.02 0.38 6.35 -35.62 -0.23 0.16 16 6 C 0.13 2.20 5.10 -4.98 -0.03 2.18 16 7 N -0.48 -8.28 4.30 -229.52 -0.99 -9.27 16 8 C 0.04 0.74 4.12 -4.98 -0.02 0.72 16 9 C 0.44 10.51 7.52 -10.99 -0.08 10.43 16 10 O -0.57 -15.73 14.62 5.54 0.08 -15.65 16 11 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 12 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 13 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 16 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.02 0.26 5.83 -67.71 -0.39 -0.13 16 21 C -0.22 -2.66 9.57 -26.73 -0.26 -2.91 16 22 C -0.17 -2.21 9.90 -26.73 -0.26 -2.47 16 23 O -0.16 -2.79 10.65 5.69 0.06 -2.73 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 28 H 0.14 1.60 7.79 -52.49 -0.41 1.19 16 29 H 0.11 2.13 6.59 -51.93 -0.34 1.79 16 30 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.06 0.89 7.82 -51.93 -0.41 0.49 16 32 H 0.09 1.56 5.52 -51.93 -0.29 1.27 16 33 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.12 1.60 5.77 -51.93 -0.30 1.30 16 36 H 0.10 1.23 6.06 -51.93 -0.31 0.91 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.41 7.40 -51.93 -0.38 1.02 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -32.44 327.32 -7.70 -40.13 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.23 Total: 12.18 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.19 Total: -7.46 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.32 Total: -47.59 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.14 Total: -18.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.44 -7.70 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.391 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds