Wall clock time and date at job start Tue Mar 31 2020 00:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34515 * 125.78941 * 2 1 4 4 C 1.41383 * 106.84319 * 180.29627 * 3 2 1 5 5 C 1.34519 * 106.84054 * 359.57508 * 4 3 2 6 6 C 1.50696 * 125.78987 * 180.11493 * 5 4 3 7 7 N 1.46901 * 109.46919 * 90.34364 * 6 5 4 8 8 C 1.46897 * 111.00157 * 169.99840 * 7 6 5 9 9 C 1.50699 * 109.47446 * 283.97703 * 8 7 6 10 10 O 1.21301 * 119.99813 * 4.48363 * 9 8 7 11 11 N 1.34778 * 120.00476 * 184.48276 * 9 8 7 12 12 C 1.37096 * 120.00080 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00171 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00126 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00292 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46980 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47280 * 120.00385 * 16 14 12 19 19 H 1.48506 * 109.47243 * 240.00522 * 16 14 12 20 20 C 1.46896 * 110.99861 * 293.94924 * 7 6 5 21 21 C 1.53003 * 117.50102 * 247.90204 * 20 7 6 22 22 C 1.53001 * 60.00001 * 252.50923 * 21 20 7 23 23 O 1.34306 * 108.41709 * 0.42691 * 5 4 3 24 24 H 1.09006 * 109.46830 * 90.00129 * 1 2 3 25 25 H 1.08998 * 109.46972 * 209.99942 * 1 2 3 26 26 H 1.08997 * 109.47347 * 330.00302 * 1 2 3 27 27 H 1.08003 * 126.58131 * 0.03518 * 3 2 1 28 28 H 1.07997 * 126.57946 * 179.73063 * 4 3 2 29 29 H 1.09005 * 109.46985 * 210.33339 * 6 5 4 30 30 H 1.08990 * 109.47257 * 330.34274 * 6 5 4 31 31 H 1.09006 * 109.47154 * 43.97781 * 8 7 6 32 32 H 1.08999 * 109.47647 * 163.97352 * 8 7 6 33 33 H 0.96996 * 119.99718 * 359.97438 * 11 9 8 34 34 H 0.97002 * 119.99430 * 179.97438 * 15 14 12 35 35 H 1.09001 * 115.55081 * 33.61228 * 20 7 6 36 36 H 1.08994 * 117.49643 * 0.02562 * 21 20 7 37 37 H 1.09004 * 117.49890 * 145.02226 * 21 20 7 38 38 H 1.08998 * 117.49766 * 252.50254 * 22 21 20 39 39 H 1.09002 * 117.49517 * 107.48929 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0070 5 6 3.5815 -0.7122 -0.0013 6 6 4.7707 -1.6377 -0.0030 7 7 5.1583 -1.9394 1.3814 8 6 6.1554 -3.0172 1.4260 9 6 5.4768 -4.3399 1.1790 10 8 4.2957 -4.3737 0.9044 11 7 6.1820 -5.4854 1.2630 12 6 5.5645 -6.6886 1.0388 13 1 4.5127 -6.7188 0.7951 14 6 6.2917 -7.8695 1.1249 15 7 7.5714 -7.8329 1.4218 16 14 5.4501 -9.5091 0.8200 17 1 4.0167 -9.2792 0.5077 18 1 6.1027 -10.1953 -0.3238 19 1 5.5618 -10.3563 2.0346 20 6 5.6530 -0.7362 2.0636 21 6 7.1374 -0.6927 2.4319 22 6 6.0832 -0.8791 3.5250 23 8 2.2925 -1.0894 -0.0008 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9665 2.1205 0.0005 28 1 4.5211 1.2434 -0.0130 29 1 4.5102 -2.5630 -0.5171 30 1 5.6035 -1.1583 -0.5172 31 1 6.9095 -2.8467 0.6576 32 1 6.6321 -3.0310 2.4061 33 1 7.1265 -5.4583 1.4822 34 1 8.0789 -8.6573 1.4823 35 1 5.1800 0.2001 1.7676 36 1 7.7470 -1.5567 2.1675 37 1 7.6413 0.2724 2.3779 38 1 5.8937 -0.0367 4.1902 39 1 5.9993 -1.8659 3.9801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609417437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:21 Heat of formation + Delta-G solvation = -3.931133 kcal Electronic energy + Delta-G solvation = -21536.337845 eV Core-core repulsion = 18253.123126 eV Total energy + Delta-G solvation = -3283.214719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.50176 -40.68949 -39.08530 -36.03165 -35.08558 -34.05617 -33.32140 -32.77266 -30.05662 -27.86218 -26.15746 -25.05532 -23.26024 -22.63957 -21.87064 -21.14176 -20.52437 -19.77843 -18.43004 -17.54563 -17.38607 -16.72386 -16.41620 -16.27706 -15.69761 -15.61624 -15.14643 -14.99402 -14.55427 -14.12549 -13.85142 -13.70695 -13.67974 -13.53699 -13.29999 -13.07504 -12.87855 -12.72986 -12.42212 -12.37316 -12.26376 -12.12699 -11.81978 -11.50287 -11.23776 -10.75313 -10.30463 -10.00803 -9.25895 -9.02954 -8.47136 -5.95615 0.75815 1.35395 1.40528 1.54719 1.67237 2.03881 2.08035 2.27738 2.66906 2.97699 3.19132 3.42341 3.66652 3.92453 4.00184 4.07998 4.10931 4.17472 4.18219 4.27648 4.38484 4.47545 4.55970 4.59821 4.70764 4.80301 4.84903 4.90648 4.95874 5.08107 5.08552 5.26613 5.32794 5.40633 5.71895 5.81682 6.02370 6.11016 6.36893 6.60466 7.13038 7.55643 8.12535 8.70524 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.004452 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.270833 B = 6287.940052 C = 7489.690897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.037 4.037 3 C -0.216 4.216 4 C -0.201 4.201 5 C -0.016 4.016 6 C 0.138 3.862 7 N -0.505 5.505 8 C 0.058 3.942 9 C 0.438 3.562 10 O -0.615 6.615 11 N -0.573 5.573 12 C -0.332 4.332 13 H 0.076 0.924 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.991 3.009 17 H -0.276 1.276 18 H -0.269 1.269 19 H -0.270 1.270 20 C 0.005 3.995 21 C -0.202 4.202 22 C -0.177 4.177 23 O -0.200 6.200 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.176 0.824 28 H 0.171 0.829 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 19.215 -0.685 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.235 4.235 4 C -0.220 4.220 5 C -0.066 4.066 6 C 0.011 3.989 7 N -0.227 5.227 8 C -0.073 4.073 9 C 0.226 3.774 10 O -0.501 6.501 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.094 0.906 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.201 1.201 18 H -0.194 1.194 19 H -0.195 1.195 20 C -0.103 4.103 21 C -0.241 4.241 22 C -0.215 4.215 23 O -0.098 6.098 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.132 0.868 27 H 0.193 0.807 28 H 0.188 0.812 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.152 0.848 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.160 18.555 -0.615 19.025 hybrid contribution 0.889 -0.895 -0.326 1.303 sum -3.271 17.660 -0.941 17.985 Atomic orbital electron populations 1.20461 0.83085 1.04839 1.04476 1.23328 0.95729 0.84114 1.05540 1.21865 0.92102 1.00146 1.09378 1.21826 0.99406 0.92660 1.08146 1.22321 0.82701 0.94752 1.06811 1.20418 0.91405 0.97337 0.89697 1.61173 1.39754 1.06162 1.15611 1.21820 0.93085 0.88461 1.03922 1.20841 0.87611 0.86274 0.82722 1.90520 1.17795 1.87723 1.54071 1.41902 1.11963 1.04910 1.62336 1.19660 0.95735 0.84125 1.46592 0.90646 1.25996 0.96154 1.02467 0.96461 1.69676 1.07611 1.30205 1.48603 0.84899 0.77997 0.77219 0.78382 1.20075 1.19410 1.19524 1.22881 0.96288 0.93504 0.97669 1.23675 0.92183 1.04672 1.03611 1.23134 1.03411 1.03274 0.91705 1.84051 1.17513 1.36794 1.71402 0.88880 0.91381 0.86801 0.80669 0.81165 0.91596 0.89158 0.90173 0.87165 0.76991 0.91285 0.84810 0.88454 0.86253 0.86525 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.42 71.24 0.74 -0.59 16 2 C -0.04 -1.02 7.32 24.83 0.18 -0.84 16 3 C -0.22 -5.07 10.81 22.19 0.24 -4.83 16 4 C -0.20 -5.08 9.22 22.19 0.20 -4.87 16 5 C -0.02 -0.52 6.35 24.83 0.16 -0.36 16 6 C 0.14 4.69 5.10 85.56 0.44 5.13 16 7 N -0.50 -17.50 4.30 -880.08 -3.79 -21.29 16 8 C 0.06 2.07 4.12 85.56 0.35 2.42 16 9 C 0.44 21.71 7.52 87.66 0.66 22.36 16 10 O -0.62 -35.86 14.62 -3.09 -0.05 -35.90 16 11 N -0.57 -30.14 5.29 -306.97 -1.62 -31.77 16 12 C -0.33 -19.30 9.68 84.04 0.81 -18.48 16 13 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 14 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 15 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 16 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 C 0.01 0.13 5.83 44.92 0.26 0.39 16 21 C -0.20 -4.16 9.57 30.60 0.29 -3.87 16 22 C -0.18 -4.20 9.90 30.60 0.30 -3.90 16 23 O -0.20 -7.44 10.65 -2.54 -0.03 -7.47 16 24 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.17 3.21 7.79 -2.91 -0.02 3.19 16 29 H 0.07 2.76 6.59 -2.38 -0.02 2.75 16 30 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 31 H 0.08 2.49 7.82 -2.38 -0.02 2.47 16 32 H 0.11 3.59 5.52 -2.39 -0.01 3.58 16 33 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 34 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.13 3.14 5.77 -2.39 -0.01 3.13 16 36 H 0.10 2.09 6.06 -2.39 -0.01 2.08 16 37 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.08 2.19 7.40 -2.39 -0.02 2.18 16 Total: -1.00 -73.66 327.32 2.28 -71.38 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: 0.34 Total: 36.62 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.11 Total: -7.57 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -5.13 Total: -102.90 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.07 Total: -43.37 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -73.66 2.28 -71.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.453 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds