Wall clock time and date at job start Tue Mar 31 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00022 * 2 1 4 4 C 1.53002 * 109.46947 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47270 * 64.99878 * 4 3 2 6 6 C 1.46499 * 120.00387 * 263.76727 * 5 4 3 7 7 C 1.50695 * 109.47501 * 270.00168 * 6 5 4 8 8 H 1.08003 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00218 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99960 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99924 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47149 * 90.00353 * 11 9 7 13 13 H 1.48502 * 109.46992 * 209.99714 * 11 9 7 14 14 H 1.48496 * 109.47373 * 330.00353 * 11 9 7 15 15 C 1.34784 * 119.99840 * 83.76880 * 5 4 3 16 16 O 1.21554 * 120.00008 * 185.84559 * 15 5 4 17 17 C 1.47840 * 119.99786 * 5.85026 * 15 5 4 18 18 C 1.39560 * 120.56497 * 54.00993 * 17 15 5 19 19 N 1.31659 * 120.56781 * 180.28505 * 18 17 15 20 20 C 1.31957 * 121.88031 * 359.73546 * 19 18 17 21 21 C 1.38309 * 121.08098 * 0.02562 * 20 19 18 22 22 C 1.38404 * 119.30523 * 359.97438 * 21 20 19 23 23 C 1.50694 * 120.85640 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46760 * 300.00107 * 1 2 3 26 26 H 1.08998 * 109.47020 * 59.99345 * 1 2 3 27 27 H 1.09000 * 109.46934 * 60.00739 * 3 2 1 28 28 H 1.08997 * 109.47527 * 300.00153 * 3 2 1 29 29 H 1.09006 * 109.46554 * 305.00186 * 4 3 2 30 30 H 1.09004 * 109.46972 * 185.00484 * 4 3 2 31 31 H 1.09004 * 109.46833 * 30.00497 * 6 5 4 32 32 H 1.09005 * 109.47150 * 149.99743 * 6 5 4 33 33 H 0.96999 * 120.00041 * 179.97438 * 10 9 7 34 34 H 1.08005 * 119.71367 * 0.02666 * 18 17 15 35 35 H 1.08001 * 119.46223 * 180.02562 * 20 19 18 36 36 H 1.07996 * 120.35375 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.47177 * 90.46542 * 23 22 21 38 38 H 1.08996 * 109.47384 * 330.46310 * 23 22 21 39 39 H 1.08999 * 109.47083 * 210.46096 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2368 -0.8763 -1.3044 7 6 5.6806 -1.1379 -0.9610 8 1 6.3379 -0.3134 -0.7273 9 6 6.1621 -2.4297 -0.9444 10 7 5.3615 -3.4336 -1.2285 11 14 7.9521 -2.7538 -0.5195 12 1 8.0853 -2.9494 0.9466 13 1 8.4152 -3.9752 -1.2258 14 1 8.7788 -1.5945 -0.9412 15 6 4.1406 1.3191 -2.3571 16 8 4.4021 0.7914 -3.4204 17 6 4.0034 2.7889 -2.2752 18 6 4.7494 3.5208 -1.3503 19 7 4.6232 4.8291 -1.2735 20 6 3.8010 5.4973 -2.0602 21 6 3.0306 4.8458 -3.0061 22 6 3.1263 3.4703 -3.1272 23 6 2.3026 2.7249 -4.1454 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.8514 0.5681 0.8410 30 1 3.9786 2.1765 0.0890 31 1 3.5944 -1.3878 -0.5876 32 1 4.0289 -1.2474 -2.3080 33 1 5.7004 -4.3424 -1.2172 34 1 5.4331 3.0091 -0.6890 35 1 3.7286 6.5706 -1.9639 36 1 2.3618 5.4044 -3.6441 37 1 2.8595 2.6512 -5.0796 38 1 1.3694 3.2602 -4.3201 39 1 2.0834 1.7242 -3.7732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610387470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:07 Heat of formation + Delta-G solvation = -41.397522 kcal Electronic energy + Delta-G solvation = -22298.869825 eV Core-core repulsion = 19014.030441 eV Total energy + Delta-G solvation = -3284.839384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57834 -38.59629 -37.49162 -35.00337 -33.76563 -32.75971 -31.31329 -29.60776 -28.08214 -26.97218 -26.00934 -24.39177 -22.96172 -22.49979 -21.85546 -18.92221 -17.14489 -16.62871 -16.39877 -16.27134 -16.20071 -15.63463 -15.16525 -14.77920 -14.41766 -14.15083 -13.97704 -13.56832 -13.21430 -12.85036 -12.70624 -12.67998 -12.29901 -11.92305 -11.85022 -11.67055 -11.63231 -11.25847 -10.90763 -10.86024 -10.44531 -10.15437 -9.77427 -9.59329 -9.51689 -9.43000 -9.11704 -8.86894 -8.38034 -7.67867 -5.99620 -4.04603 0.91662 1.20720 3.26183 3.33141 3.39683 3.44014 3.73188 3.86051 4.04442 4.41932 4.49009 4.68695 4.72070 4.87487 5.06182 5.25578 5.34550 5.36289 5.43211 5.47677 5.49094 5.52767 5.55857 5.66439 5.67948 5.70219 5.81620 5.90945 6.09672 6.18865 6.32306 6.62465 7.17389 7.36187 7.50799 7.58113 7.90300 7.97118 8.27727 8.37718 8.86658 9.03975 9.59779 11.08307 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.006230 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.966187 B = 4493.402357 C = 5334.834035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.046 3.954 4 C 0.104 3.896 5 N -0.579 5.579 6 C 0.250 3.750 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.552 3.448 16 O -0.529 6.529 17 C -0.166 4.166 18 C 0.129 3.871 19 N -0.490 5.490 20 C 0.105 3.895 21 C -0.181 4.181 22 C -0.003 4.003 23 C -0.117 4.117 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 15.260 1.011 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.309 5.309 6 C 0.131 3.869 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.337 3.663 16 O -0.406 6.406 17 C -0.171 4.171 18 C -0.029 4.029 19 N -0.199 5.199 20 C -0.051 4.051 21 C -0.201 4.201 22 C -0.012 4.012 23 C -0.174 4.174 24 H 0.103 0.897 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.104 15.013 1.048 17.588 hybrid contribution 0.271 -0.387 -0.305 0.562 sum -8.832 14.626 0.743 17.102 Atomic orbital electron populations 1.22701 0.81998 1.02603 0.99153 1.88084 1.18764 1.26960 1.95152 1.23067 0.95240 0.85325 0.99526 1.21718 0.91337 0.99470 0.89488 1.48124 1.63656 1.11333 1.07782 1.19357 0.96006 0.72302 0.99196 1.21460 0.95479 0.92517 1.47399 0.92516 1.24912 0.97841 0.95974 0.95238 1.69944 1.35321 0.99157 1.48656 0.86526 0.84963 0.77818 0.78280 1.20626 1.21138 1.19923 1.17926 0.78518 0.85055 0.84785 1.90768 1.48317 1.73249 1.28253 1.21286 1.00426 0.96412 0.98993 1.23008 0.95889 0.89476 0.94501 1.67697 1.18698 1.08822 1.24700 1.22823 0.91112 1.00263 0.90935 1.21953 1.02666 0.94098 1.01359 1.20377 0.93508 0.93574 0.93701 1.20860 0.98254 1.00421 0.97847 0.89700 0.94624 0.94653 0.93027 0.93954 0.88440 0.89893 0.93756 0.93935 0.92768 0.81896 0.82701 0.84566 0.89653 0.91307 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.38 10.29 -35.23 -0.36 -6.74 16 3 C 0.05 0.69 6.23 37.16 0.23 0.92 16 4 C 0.10 1.76 5.55 -4.04 -0.02 1.73 16 5 N -0.58 -12.37 2.42 -176.17 -0.43 -12.80 16 6 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 7 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 11 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 15 C 0.55 11.69 6.13 -12.33 -0.08 11.61 16 16 O -0.53 -13.31 15.71 5.32 0.08 -13.23 16 17 C -0.17 -2.78 4.81 -104.82 -0.50 -3.28 16 18 C 0.13 1.97 8.80 -17.13 -0.15 1.82 16 19 N -0.49 -6.88 10.35 -12.91 -0.13 -7.01 16 20 C 0.10 1.19 11.17 -17.47 -0.20 0.99 16 21 C -0.18 -2.01 9.80 -39.49 -0.39 -2.40 16 22 C 0.00 -0.04 5.95 -103.91 -0.62 -0.66 16 23 C -0.12 -1.55 9.23 36.00 0.33 -1.21 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.62 7.95 -51.93 -0.41 0.21 16 29 H 0.10 1.70 8.03 -51.93 -0.42 1.28 16 30 H 0.08 1.20 4.49 -51.93 -0.23 0.97 16 31 H 0.04 1.22 7.73 -51.93 -0.40 0.82 16 32 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.16 2.42 7.28 -52.48 -0.38 2.04 16 35 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.08 1.19 6.99 -51.93 -0.36 0.83 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -34.15 332.48 -6.35 -40.50 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.52 Total: -0.67 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.72 Total: 3.99 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.18 Total: -45.81 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.28 Total: -19.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.15 -6.35 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.897 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds