Wall clock time and date at job start Tue Mar 31 2020 00:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00022 * 2 1 4 4 C 1.53002 * 109.46947 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47270 * 64.99878 * 4 3 2 6 6 C 1.46499 * 120.00387 * 263.76727 * 5 4 3 7 7 C 1.50695 * 109.47501 * 270.00168 * 6 5 4 8 8 H 1.08003 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00218 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99960 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99924 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47149 * 90.00353 * 11 9 7 13 13 H 1.48502 * 109.46992 * 209.99714 * 11 9 7 14 14 H 1.48496 * 109.47373 * 330.00353 * 11 9 7 15 15 C 1.34784 * 119.99840 * 83.76880 * 5 4 3 16 16 O 1.21554 * 120.00008 * 185.84559 * 15 5 4 17 17 C 1.47840 * 119.99786 * 5.85026 * 15 5 4 18 18 C 1.39560 * 120.56497 * 54.00993 * 17 15 5 19 19 N 1.31659 * 120.56781 * 180.28505 * 18 17 15 20 20 C 1.31957 * 121.88031 * 359.73546 * 19 18 17 21 21 C 1.38309 * 121.08098 * 0.02562 * 20 19 18 22 22 C 1.38404 * 119.30523 * 359.97438 * 21 20 19 23 23 C 1.50694 * 120.85640 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46760 * 300.00107 * 1 2 3 26 26 H 1.08998 * 109.47020 * 59.99345 * 1 2 3 27 27 H 1.09000 * 109.46934 * 60.00739 * 3 2 1 28 28 H 1.08997 * 109.47527 * 300.00153 * 3 2 1 29 29 H 1.09006 * 109.46554 * 305.00186 * 4 3 2 30 30 H 1.09004 * 109.46972 * 185.00484 * 4 3 2 31 31 H 1.09004 * 109.46833 * 30.00497 * 6 5 4 32 32 H 1.09005 * 109.47150 * 149.99743 * 6 5 4 33 33 H 0.96999 * 120.00041 * 179.97438 * 10 9 7 34 34 H 1.08005 * 119.71367 * 0.02666 * 18 17 15 35 35 H 1.08001 * 119.46223 * 180.02562 * 20 19 18 36 36 H 1.07996 * 120.35375 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.47177 * 90.46542 * 23 22 21 38 38 H 1.08996 * 109.47384 * 330.46310 * 23 22 21 39 39 H 1.08999 * 109.47083 * 210.46096 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2368 -0.8763 -1.3044 7 6 5.6806 -1.1379 -0.9610 8 1 6.3379 -0.3134 -0.7273 9 6 6.1621 -2.4297 -0.9444 10 7 5.3615 -3.4336 -1.2285 11 14 7.9521 -2.7538 -0.5195 12 1 8.0853 -2.9494 0.9466 13 1 8.4152 -3.9752 -1.2258 14 1 8.7788 -1.5945 -0.9412 15 6 4.1406 1.3191 -2.3571 16 8 4.4021 0.7914 -3.4204 17 6 4.0034 2.7889 -2.2752 18 6 4.7494 3.5208 -1.3503 19 7 4.6232 4.8291 -1.2735 20 6 3.8010 5.4973 -2.0602 21 6 3.0306 4.8458 -3.0061 22 6 3.1263 3.4703 -3.1272 23 6 2.3026 2.7249 -4.1454 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.8514 0.5681 0.8410 30 1 3.9786 2.1765 0.0890 31 1 3.5944 -1.3878 -0.5876 32 1 4.0289 -1.2474 -2.3080 33 1 5.7004 -4.3424 -1.2172 34 1 5.4331 3.0091 -0.6890 35 1 3.7286 6.5706 -1.9639 36 1 2.3618 5.4044 -3.6441 37 1 2.8595 2.6512 -5.0796 38 1 1.3694 3.2602 -4.3201 39 1 2.0834 1.7242 -3.7732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610387470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:06 Heat of formation + Delta-G solvation = -65.467390 kcal Electronic energy + Delta-G solvation = -22299.913573 eV Core-core repulsion = 19014.030441 eV Total energy + Delta-G solvation = -3285.883132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82663 -40.02553 -38.80245 -36.68225 -34.91404 -34.81327 -32.55918 -31.10086 -29.37991 -28.60450 -27.16878 -25.86988 -24.58367 -23.80315 -23.12391 -20.43652 -18.71258 -18.44263 -17.74818 -17.58579 -17.33880 -17.01905 -16.61747 -16.34173 -15.86561 -15.40377 -15.27564 -14.98160 -14.62496 -14.25513 -13.93767 -13.83743 -13.67805 -13.52411 -13.27658 -13.09274 -12.89035 -12.83357 -12.68000 -12.56630 -12.21581 -12.00788 -11.70993 -11.10471 -10.66402 -10.63338 -10.50207 -10.38556 -10.11740 -9.48039 -8.20851 -6.36281 -0.17883 0.16604 1.36873 1.39915 1.50162 1.73550 2.19191 2.41614 2.71782 2.90596 3.08641 3.36789 3.53228 3.68019 3.78905 4.03911 4.12084 4.18009 4.32463 4.38372 4.45606 4.49163 4.52280 4.54664 4.62523 4.71362 4.81195 4.83126 4.87299 5.07308 5.11693 5.24304 5.31684 5.53949 5.64805 5.82138 6.06467 6.25917 6.65625 6.73844 6.87561 7.22022 7.38132 8.86629 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.006230 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.966187 B = 4493.402357 C = 5334.834035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.052 3.948 4 C 0.101 3.899 5 N -0.584 5.584 6 C 0.273 3.727 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.969 3.031 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.551 3.449 16 O -0.585 6.585 17 C -0.189 4.189 18 C 0.125 3.875 19 N -0.500 5.500 20 C 0.115 3.885 21 C -0.161 4.161 22 C -0.012 4.012 23 C -0.114 4.114 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.025 0.975 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.201 0.799 36 H 0.181 0.819 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 18.732 1.794 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.026 4.026 4 C -0.022 4.022 5 N -0.313 5.313 6 C 0.152 3.848 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.793 3.207 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.196 1.196 15 C 0.339 3.661 16 O -0.466 6.466 17 C -0.194 4.194 18 C -0.032 4.032 19 N -0.209 5.209 20 C -0.041 4.041 21 C -0.180 4.180 22 C -0.020 4.020 23 C -0.170 4.170 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.043 0.957 32 H 0.012 0.988 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.217 0.783 36 H 0.199 0.801 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.541 18.520 1.874 20.918 hybrid contribution 0.299 -1.360 -0.585 1.511 sum -9.243 17.160 1.289 19.533 Atomic orbital electron populations 1.22882 0.79819 1.03317 1.00833 1.88029 1.21363 1.28516 1.95498 1.23051 0.93332 0.84896 1.01272 1.21982 0.93384 1.00049 0.86786 1.48037 1.63813 1.09541 1.09894 1.18688 0.95058 0.75567 0.95511 1.21745 0.96288 0.92891 1.47597 0.92578 1.25872 1.02738 0.95644 0.94830 1.70078 1.37572 0.99673 1.49358 0.85400 0.78849 0.77606 0.78854 1.18764 1.20623 1.19633 1.18621 0.76814 0.87145 0.83559 1.90715 1.50759 1.74921 1.30189 1.20891 1.03494 0.93086 1.01932 1.22860 0.95812 0.90206 0.94306 1.67784 1.19735 1.07722 1.25704 1.23628 0.89044 1.02126 0.89262 1.22368 1.02259 0.92373 1.00996 1.20616 0.93077 0.95172 0.93182 1.20844 0.99993 0.99096 0.97107 0.89655 0.91933 0.93806 0.89327 0.93750 0.89610 0.87221 0.95659 0.98818 0.92435 0.82514 0.78260 0.80142 0.90398 0.87217 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -14.54 10.29 -148.98 -1.53 -16.07 16 3 C 0.05 1.51 6.23 71.98 0.45 1.96 16 4 C 0.10 3.46 5.55 86.38 0.48 3.94 16 5 N -0.58 -26.45 2.42 -829.56 -2.01 -28.45 16 6 C 0.27 15.51 5.16 85.63 0.44 15.95 16 7 C -0.55 -32.48 9.39 25.60 0.24 -32.24 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 11 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 C 0.55 24.62 6.13 86.78 0.53 25.16 16 16 O -0.58 -31.69 15.71 -3.89 -0.06 -31.75 16 17 C -0.19 -6.30 4.81 -19.99 -0.10 -6.40 16 18 C 0.13 3.70 8.80 85.04 0.75 4.45 16 19 N -0.50 -12.50 10.35 -194.76 -2.01 -14.52 16 20 C 0.12 2.04 11.17 84.69 0.95 2.99 16 21 C -0.16 -2.81 9.80 22.33 0.22 -2.59 16 22 C -0.01 -0.32 5.95 -19.40 -0.12 -0.43 16 23 C -0.11 -2.92 9.23 71.23 0.66 -2.26 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.27 7.95 -2.39 -0.02 1.25 16 29 H 0.09 3.11 8.03 -2.38 -0.02 3.09 16 30 H 0.11 3.15 4.49 -2.38 -0.01 3.13 16 31 H 0.03 1.51 7.73 -2.38 -0.02 1.49 16 32 H -0.01 -0.41 7.35 -2.38 -0.02 -0.43 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.16 4.67 7.28 -2.91 -0.02 4.64 16 35 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.04 1.32 6.99 -2.39 -0.02 1.30 16 Total: -1.00 -80.35 332.48 3.95 -76.40 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.04 Total: 10.51 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.21 Total: 13.42 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -3.74 Total: -100.45 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.59 Total: -47.82 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.35 3.95 -76.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610387470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.934 kcal (2) G-P(sol) polarization free energy of solvation -80.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds