Wall clock time and date at job start Mon Mar 30 2020 23:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38312 * 119.92544 * 2 1 4 4 C 1.38078 * 120.07620 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.03731 * 179.97438 * 4 3 2 6 6 C 1.38937 * 119.92184 * 359.97348 * 4 3 2 7 7 N 1.39675 * 120.06952 * 179.97438 * 6 4 3 8 8 C 1.46506 * 119.99827 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47148 * 179.72579 * 8 7 6 10 10 O 1.21295 * 119.99949 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99830 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99728 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00421 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99824 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00153 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00214 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46623 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46907 * 119.99904 * 16 14 12 19 19 H 1.48501 * 109.47055 * 240.00241 * 16 14 12 20 20 C 1.38887 * 119.85213 * 0.25612 * 6 4 3 21 21 C 1.38120 * 119.92376 * 359.51593 * 20 6 4 22 22 C 1.50703 * 119.96301 * 180.23378 * 21 20 6 23 23 O 1.42901 * 109.47029 * 0.24640 * 22 21 20 24 24 H 1.08999 * 109.46516 * 90.00251 * 1 2 3 25 25 H 1.08993 * 109.47182 * 209.99950 * 1 2 3 26 26 H 1.08998 * 109.47021 * 330.00707 * 1 2 3 27 27 H 1.08005 * 119.96023 * 359.96954 * 3 2 1 28 28 H 1.09002 * 109.47303 * 270.01835 * 5 4 3 29 29 H 1.08996 * 109.46974 * 30.02422 * 5 4 3 30 30 H 1.09002 * 109.46868 * 150.01930 * 5 4 3 31 31 H 0.97005 * 120.00304 * 359.72700 * 7 6 4 32 32 H 1.09001 * 109.46512 * 299.72740 * 8 7 6 33 33 H 1.08998 * 109.47174 * 59.71861 * 8 7 6 34 34 H 0.96998 * 120.00160 * 0.02562 * 11 9 8 35 35 H 0.96994 * 120.00439 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.03826 * 179.72474 * 20 6 4 37 37 H 1.08999 * 109.47593 * 120.25146 * 22 21 20 38 38 H 1.09000 * 109.46971 * 240.25139 * 22 21 20 39 39 H 0.96695 * 113.99988 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.3287 2.5089 0.0000 6 6 4.2740 0.0000 0.0016 7 7 5.6708 0.0001 0.0016 8 6 6.4033 -1.2687 0.0022 9 6 7.8849 -0.9933 -0.0047 10 8 8.2892 0.1503 -0.0101 11 7 8.7607 -2.0177 -0.0049 12 6 10.1086 -1.7672 -0.0117 13 1 10.4686 -0.7489 -0.0165 14 6 11.0115 -2.8233 -0.0124 15 7 10.5735 -4.0623 -0.0071 16 14 12.8481 -2.4820 -0.0210 17 1 13.0788 -1.0151 -0.0255 18 1 13.4676 -3.0764 1.1906 19 1 13.4576 -3.0833 -1.2344 20 6 3.5780 -1.2019 -0.0032 21 6 2.1968 -1.1983 0.0010 22 6 1.4407 -2.5019 0.0011 23 8 2.3672 -3.5899 0.0022 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6551 2.1330 -0.0005 28 1 4.5099 2.8234 -1.0279 29 1 3.7381 3.2676 0.5134 30 1 5.2813 2.3807 0.5140 31 1 6.1558 0.8401 -0.0031 32 1 6.1436 -1.8376 0.8949 33 1 6.1362 -1.8429 -0.8849 34 1 8.4374 -2.9322 -0.0009 35 1 11.2038 -4.7995 -0.0080 36 1 4.1162 -2.1383 -0.0069 37 1 0.8133 -2.5580 0.8906 38 1 0.8146 -2.5588 -0.8893 39 1 1.9497 -4.4620 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615696404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:56 Heat of formation + Delta-G solvation = -72.922459 kcal Electronic energy + Delta-G solvation = -20994.649425 eV Core-core repulsion = 17708.443017 eV Total energy + Delta-G solvation = -3286.206408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85477 -38.35459 -36.92564 -35.36178 -34.01307 -32.86914 -31.36583 -31.00504 -28.34903 -27.73987 -25.78043 -24.60629 -23.65360 -21.63658 -19.86323 -19.32951 -18.06001 -17.46406 -17.05597 -15.65498 -15.41574 -15.20479 -14.69388 -14.61099 -14.53559 -14.10366 -13.81009 -13.69520 -13.41901 -13.27513 -13.11969 -12.47799 -12.40568 -12.12468 -11.99367 -11.80555 -11.60916 -11.41945 -11.12541 -10.88901 -10.63292 -10.39536 -10.36950 -10.30128 -9.64092 -9.52537 -8.58592 -8.38090 -8.07956 -6.95647 -6.49769 -3.91453 1.56866 1.80202 3.11485 3.23213 3.30099 3.74729 3.76654 3.96985 4.15254 4.15491 4.85716 4.92810 4.97072 5.15079 5.18650 5.20263 5.27758 5.33635 5.43441 5.56497 5.60931 5.76752 5.80298 5.83447 5.96526 5.98119 6.03332 6.06497 6.22470 6.31458 6.56956 6.71245 6.86201 7.11210 7.47979 7.55623 7.63656 7.96377 8.19347 8.48358 9.07144 9.42002 9.90527 10.67372 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.003612 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.080810 B = 7749.117280 C = 8811.134941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.154 4.154 3 C -0.071 4.071 4 C -0.164 4.164 5 C -0.106 4.106 6 C 0.223 3.777 7 N -0.724 5.724 8 C 0.113 3.887 9 C 0.431 3.569 10 O -0.596 6.596 11 N -0.551 5.551 12 C -0.304 4.304 13 H 0.105 0.895 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.173 4.173 21 C -0.052 4.052 22 C 0.120 3.880 23 O -0.566 6.566 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.410 0.590 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.133 0.867 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.581 2.952 0.010 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.156 4.156 3 C -0.090 4.090 4 C -0.169 4.169 5 C -0.163 4.163 6 C 0.117 3.883 7 N -0.356 5.356 8 C -0.015 4.015 9 C 0.216 3.784 10 O -0.482 6.482 11 N -0.186 5.186 12 C -0.433 4.433 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.536 5.536 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.196 4.196 21 C -0.053 4.053 22 C 0.043 3.957 23 O -0.371 6.371 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.614 3.832 0.013 19.005 hybrid contribution 0.523 -0.745 -0.010 0.910 sum -18.091 3.087 0.004 18.353 Atomic orbital electron populations 1.20631 0.91909 1.01981 1.01464 1.19200 0.95264 0.92200 1.08968 1.20476 0.92540 0.96864 0.99079 1.19337 0.93739 0.93637 1.10202 1.20590 0.99809 0.93977 1.01896 1.17714 0.83624 0.93313 0.93650 1.44584 1.01942 1.08749 1.80278 1.20933 0.91662 0.86907 1.02038 1.19772 0.87086 0.86232 0.85287 1.90494 1.79279 1.21395 1.57034 1.41804 1.06214 1.07685 1.62945 1.19778 0.80443 0.95085 1.48002 0.87704 1.25312 1.00947 0.94598 0.96891 1.69619 1.35978 0.98360 1.49670 0.85766 0.81707 0.78867 0.77807 1.19153 1.20623 1.20617 1.20460 0.93616 0.96765 1.08764 1.19181 0.93400 0.92808 0.99876 1.20876 0.90275 0.84893 0.99663 1.86526 1.36128 1.16751 1.97709 0.92070 0.92344 0.92117 0.86442 0.91754 0.91871 0.91827 0.74975 0.90677 0.90665 0.77100 0.91694 0.84923 0.92550 0.92587 0.77400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.60 36.01 0.35 -0.57 16 2 C -0.15 -1.90 5.88 -104.58 -0.62 -2.52 16 3 C -0.07 -0.91 9.35 -39.61 -0.37 -1.28 16 4 C -0.16 -2.40 5.90 -104.42 -0.62 -3.01 16 5 C -0.11 -1.36 9.57 36.00 0.34 -1.01 16 6 C 0.22 3.67 6.63 -83.79 -0.56 3.12 16 7 N -0.72 -13.07 5.60 -59.80 -0.34 -13.41 16 8 C 0.11 2.13 5.39 -5.19 -0.03 2.10 16 9 C 0.43 10.23 7.85 -10.99 -0.09 10.15 16 10 O -0.60 -15.96 15.24 5.54 0.08 -15.87 16 11 N -0.55 -13.96 5.29 -10.96 -0.06 -14.01 16 12 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 13 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 16 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.17 -2.75 8.64 -39.38 -0.34 -3.09 16 21 C -0.05 -0.71 5.88 -104.65 -0.62 -1.32 16 22 C 0.12 1.26 6.15 36.01 0.22 1.48 16 23 O -0.57 -6.34 12.14 -35.23 -0.43 -6.77 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.45 6.63 -51.93 -0.34 0.10 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.06 0.88 6.55 -51.93 -0.34 0.54 16 31 H 0.41 7.75 5.44 -40.82 -0.22 7.52 16 32 H 0.08 1.33 7.97 -51.93 -0.41 0.91 16 33 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 34 H 0.40 9.56 7.90 -40.82 -0.32 9.23 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 36 H 0.13 2.18 5.68 -52.49 -0.30 1.89 16 37 H 0.06 0.49 7.48 -51.93 -0.39 0.11 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.38 2.29 9.12 45.56 0.42 2.71 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -31.97 327.02 -7.03 -39.00 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -4.37 Total: 17.70 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.56 Total: -3.94 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.33 Total: -50.84 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.34 Total: -22.64 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.97 -7.03 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615696404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.926 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds