Wall clock time and date at job start Mon Mar 30 2020 23:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38312 * 119.92544 * 2 1 4 4 C 1.38078 * 120.07620 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.03731 * 179.97438 * 4 3 2 6 6 C 1.38937 * 119.92184 * 359.97348 * 4 3 2 7 7 N 1.39675 * 120.06952 * 179.97438 * 6 4 3 8 8 C 1.46506 * 119.99827 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47148 * 179.72579 * 8 7 6 10 10 O 1.21295 * 119.99949 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99830 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99728 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00421 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99824 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00153 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00214 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46623 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46907 * 119.99904 * 16 14 12 19 19 H 1.48501 * 109.47055 * 240.00241 * 16 14 12 20 20 C 1.38887 * 119.85213 * 0.25612 * 6 4 3 21 21 C 1.38120 * 119.92376 * 359.51593 * 20 6 4 22 22 C 1.50703 * 119.96301 * 180.23378 * 21 20 6 23 23 O 1.42901 * 109.47029 * 0.24640 * 22 21 20 24 24 H 1.08999 * 109.46516 * 90.00251 * 1 2 3 25 25 H 1.08993 * 109.47182 * 209.99950 * 1 2 3 26 26 H 1.08998 * 109.47021 * 330.00707 * 1 2 3 27 27 H 1.08005 * 119.96023 * 359.96954 * 3 2 1 28 28 H 1.09002 * 109.47303 * 270.01835 * 5 4 3 29 29 H 1.08996 * 109.46974 * 30.02422 * 5 4 3 30 30 H 1.09002 * 109.46868 * 150.01930 * 5 4 3 31 31 H 0.97005 * 120.00304 * 359.72700 * 7 6 4 32 32 H 1.09001 * 109.46512 * 299.72740 * 8 7 6 33 33 H 1.08998 * 109.47174 * 59.71861 * 8 7 6 34 34 H 0.96998 * 120.00160 * 0.02562 * 11 9 8 35 35 H 0.96994 * 120.00439 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.03826 * 179.72474 * 20 6 4 37 37 H 1.08999 * 109.47593 * 120.25146 * 22 21 20 38 38 H 1.09000 * 109.46971 * 240.25139 * 22 21 20 39 39 H 0.96695 * 113.99988 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.3287 2.5089 0.0000 6 6 4.2740 0.0000 0.0016 7 7 5.6708 0.0001 0.0016 8 6 6.4033 -1.2687 0.0022 9 6 7.8849 -0.9933 -0.0047 10 8 8.2892 0.1503 -0.0101 11 7 8.7607 -2.0177 -0.0049 12 6 10.1086 -1.7672 -0.0117 13 1 10.4686 -0.7489 -0.0165 14 6 11.0115 -2.8233 -0.0124 15 7 10.5735 -4.0623 -0.0071 16 14 12.8481 -2.4820 -0.0210 17 1 13.0788 -1.0151 -0.0255 18 1 13.4676 -3.0764 1.1906 19 1 13.4576 -3.0833 -1.2344 20 6 3.5780 -1.2019 -0.0032 21 6 2.1968 -1.1983 0.0010 22 6 1.4407 -2.5019 0.0011 23 8 2.3672 -3.5899 0.0022 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6551 2.1330 -0.0005 28 1 4.5099 2.8234 -1.0279 29 1 3.7381 3.2676 0.5134 30 1 5.2813 2.3807 0.5140 31 1 6.1558 0.8401 -0.0031 32 1 6.1436 -1.8376 0.8949 33 1 6.1362 -1.8429 -0.8849 34 1 8.4374 -2.9322 -0.0009 35 1 11.2038 -4.7995 -0.0080 36 1 4.1162 -2.1383 -0.0069 37 1 0.8133 -2.5580 0.8906 38 1 0.8146 -2.5588 -0.8893 39 1 1.9497 -4.4620 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615696404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:55 Heat of formation + Delta-G solvation = -96.480119 kcal Electronic energy + Delta-G solvation = -20995.670962 eV Core-core repulsion = 17708.443017 eV Total energy + Delta-G solvation = -3287.227944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00479 -40.15195 -37.85522 -36.62518 -35.93689 -33.98647 -33.37127 -32.09115 -29.28948 -29.18219 -27.02608 -26.19384 -24.75234 -22.82127 -21.20263 -20.86122 -20.03852 -18.46887 -18.34682 -17.18133 -16.88726 -16.42634 -16.33555 -15.91997 -15.81254 -15.58841 -15.01632 -14.80767 -14.69734 -14.41339 -14.03968 -13.87750 -13.80064 -13.56005 -13.26090 -12.96851 -12.81908 -12.74689 -12.49549 -12.47958 -12.13789 -11.87851 -11.61054 -11.60384 -11.21587 -10.63152 -10.57258 -10.12303 -9.41910 -8.53677 -8.16156 -6.04073 0.50843 0.72955 1.32860 1.40343 1.54737 1.88069 2.19930 2.44902 2.90146 3.13063 3.14816 3.44239 3.92621 4.03390 4.16427 4.20023 4.34729 4.35890 4.43118 4.43581 4.58310 4.62570 4.69016 4.79577 4.85907 4.98346 5.01121 5.06963 5.18671 5.35132 5.35508 5.53492 5.63647 5.85223 5.86747 6.06868 6.38851 6.48996 6.81652 7.01335 7.01351 7.41351 7.93025 8.63589 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.003612 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.080810 B = 7749.117280 C = 8811.134941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.148 4.148 3 C -0.075 4.075 4 C -0.175 4.175 5 C -0.103 4.103 6 C 0.193 3.807 7 N -0.736 5.736 8 C 0.132 3.868 9 C 0.430 3.570 10 O -0.629 6.629 11 N -0.559 5.559 12 C -0.340 4.340 13 H 0.082 0.918 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.997 3.003 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.192 4.192 21 C -0.065 4.065 22 C 0.120 3.880 23 O -0.592 6.592 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.403 0.597 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.399 0.601 35 H 0.281 0.719 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.637 2.831 0.019 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C -0.093 4.093 4 C -0.179 4.179 5 C -0.160 4.160 6 C 0.090 3.910 7 N -0.369 5.369 8 C 0.004 3.996 9 C 0.217 3.783 10 O -0.517 6.517 11 N -0.194 5.194 12 C -0.469 4.469 13 H 0.100 0.900 14 C -0.210 4.210 15 N -0.555 5.555 16 Si 0.820 3.180 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.066 4.066 22 C 0.043 3.957 23 O -0.401 6.401 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.242 0.758 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -20.733 3.671 0.023 21.056 hybrid contribution 1.006 -0.705 -0.014 1.228 sum -19.727 2.966 0.009 19.949 Atomic orbital electron populations 1.20713 0.88943 1.03482 1.02732 1.19688 0.97401 0.91471 1.06409 1.20868 0.91863 0.98465 0.98109 1.19635 0.94802 0.93500 1.10010 1.20594 0.99229 0.94025 1.02165 1.17967 0.82759 0.94554 0.95701 1.44502 1.02720 1.07646 1.82034 1.20709 0.88019 0.87859 1.03033 1.20569 0.88934 0.85369 0.83381 1.90461 1.80472 1.22726 1.58021 1.41840 1.05910 1.08167 1.63515 1.19756 0.81949 0.94612 1.50561 0.89964 1.26125 1.05016 0.94166 0.95688 1.69678 1.37612 0.98954 1.49238 0.84813 0.76295 0.78388 0.78475 1.19685 1.19408 1.19395 1.20521 0.94925 0.95972 1.10069 1.19660 0.92787 0.95091 0.99085 1.20988 0.89852 0.83278 1.01548 1.86479 1.37498 1.18253 1.97830 0.90752 0.90859 0.90722 0.83653 0.91465 0.89496 0.93598 0.75820 0.89578 0.89561 0.76663 0.90981 0.86301 0.90419 0.90516 0.75030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.60 71.24 0.68 -0.71 16 2 C -0.15 -3.25 5.88 -19.84 -0.12 -3.37 16 3 C -0.07 -1.74 9.35 22.25 0.21 -1.53 16 4 C -0.17 -5.00 5.90 -19.74 -0.12 -5.12 16 5 C -0.10 -2.61 9.57 71.24 0.68 -1.93 16 6 C 0.19 6.47 6.63 38.21 0.25 6.72 16 7 N -0.74 -27.58 5.60 -343.12 -1.92 -29.50 16 8 C 0.13 5.16 5.39 85.63 0.46 5.62 16 9 C 0.43 21.24 7.85 87.66 0.69 21.93 16 10 O -0.63 -35.16 15.24 -3.08 -0.05 -35.21 16 11 N -0.56 -29.26 5.29 -306.98 -1.62 -30.88 16 12 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 13 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 14 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 15 N -0.91 -49.30 13.05 21.66 0.28 -49.01 16 16 Si 1.00 42.71 29.55 68.60 2.03 44.73 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 C -0.19 -6.11 8.64 22.40 0.19 -5.91 16 21 C -0.07 -1.67 5.88 -19.89 -0.12 -1.79 16 22 C 0.12 2.21 6.15 71.24 0.44 2.65 16 23 O -0.59 -12.44 12.14 -148.98 -1.81 -14.25 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.80 6.63 -2.39 -0.02 0.79 16 26 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 27 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 30 H 0.05 1.31 6.55 -2.39 -0.02 1.30 16 31 H 0.40 16.02 5.44 -92.70 -0.50 15.51 16 32 H 0.09 3.14 7.97 -2.39 -0.02 3.12 16 33 H 0.09 3.14 7.93 -2.39 -0.02 3.12 16 34 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16 35 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.12 4.00 5.68 -2.91 -0.02 3.99 16 37 H 0.08 1.10 7.48 -2.39 -0.02 1.08 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.40 4.14 9.12 -74.06 -0.68 3.47 16 Total: -1.00 -70.15 327.02 0.64 -69.50 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: -0.81 Total: 46.66 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.54 Total: -2.04 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -3.26 Total: -109.40 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.85 Total: -49.46 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.15 0.64 -69.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615696404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.977 kcal (2) G-P(sol) polarization free energy of solvation -70.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds