Wall clock time and date at job start Tue Mar 31 2020 00:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.34300 * 125.78728 * 2 1 4 4 C 1.34310 * 109.47576 * 180.02562 * 3 2 1 5 5 C 1.34508 * 108.41669 * 359.72253 * 4 3 2 6 6 C 1.34508 * 125.78854 * 180.02562 * 2 1 3 7 7 C 1.50699 * 126.58174 * 359.96558 * 6 2 1 8 8 N 1.46497 * 109.47293 * 79.99939 * 7 6 2 9 9 C 1.34780 * 119.99719 * 179.97438 * 8 7 6 10 10 O 1.21578 * 120.00108 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99704 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46847 * 184.79711 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81434 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31518 * 119.99808 * 355.41947 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48760 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14904 * 13 12 11 24 24 H 1.08995 * 109.46573 * 269.95705 * 1 2 3 25 25 H 1.08991 * 109.47168 * 29.95850 * 1 2 3 26 26 H 1.09005 * 109.46721 * 149.95779 * 1 2 3 27 27 H 1.08002 * 125.78613 * 180.02562 * 4 3 2 28 28 H 1.08005 * 126.57843 * 180.26540 * 5 4 3 29 29 H 1.08996 * 109.47074 * 319.99817 * 7 6 2 30 30 H 1.09003 * 109.46911 * 200.00249 * 7 6 2 31 31 H 0.96996 * 119.99936 * 0.02562 * 8 7 6 32 32 H 0.97009 * 119.99753 * 0.02562 * 11 9 8 33 33 H 1.08993 * 109.47219 * 64.80231 * 12 11 9 34 34 H 1.09000 * 109.47241 * 304.79395 * 12 11 9 35 35 H 0.97001 * 119.99858 * 184.99726 * 17 16 14 36 36 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 37 37 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 38 38 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 39 39 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5815 0.7122 -0.0006 5 6 3.6309 -0.6320 0.0052 6 6 2.2937 -1.0911 -0.0005 7 6 1.8373 -2.5273 -0.0004 8 7 1.4601 -2.9200 -1.3604 9 6 1.0184 -4.1700 -1.6029 10 8 0.9334 -4.9719 -0.6930 11 7 0.6709 -4.5311 -2.8540 12 6 0.1903 -5.8897 -3.1175 13 6 -0.0195 -6.0736 -4.6219 14 6 -1.1028 -5.2248 -5.2357 15 1 -0.8524 -4.2826 -5.7006 16 6 -2.4130 -5.6536 -5.2088 17 7 -2.7061 -6.8425 -4.7290 18 14 -3.7717 -4.5458 -5.8539 19 1 -3.1835 -3.2704 -6.3361 20 1 -4.4717 -5.2226 -6.9752 21 1 -4.7400 -4.2640 -4.7639 22 6 1.2147 -6.3704 -5.4762 23 6 0.1918 -7.4750 -5.1984 24 1 -0.3632 -0.0008 1.0276 25 1 -0.3633 0.8903 -0.5131 26 1 -0.3633 -0.8897 -0.5145 27 1 4.4337 1.3757 -0.0003 28 1 4.5213 -1.2433 0.0104 29 1 0.9773 -2.6352 0.6606 30 1 2.6478 -3.1661 0.3507 31 1 1.5290 -2.2805 -2.0865 32 1 0.7391 -3.8914 -3.5801 33 1 -0.7541 -6.0483 -2.5970 34 1 0.9265 -6.6108 -2.7625 35 1 -3.6166 -7.1736 -4.7762 36 1 1.2429 -5.9518 -6.4822 37 1 2.1759 -6.4351 -4.9665 38 1 0.4807 -8.2658 -4.5062 39 1 -0.4530 -7.7831 -6.0215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619527581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:31 Heat of formation + Delta-G solvation = 2.282940 kcal Electronic energy + Delta-G solvation = -21145.001792 eV Core-core repulsion = 17862.056535 eV Total energy + Delta-G solvation = -3282.945257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.79804 -39.34147 -36.79824 -35.29761 -33.25921 -32.55671 -32.01444 -31.92883 -27.90926 -26.28121 -25.46644 -24.47077 -21.64821 -21.15858 -20.25191 -19.95101 -19.36402 -17.85799 -17.03332 -16.37237 -16.16734 -15.40652 -15.20262 -14.66959 -14.53095 -14.00496 -13.76215 -13.70808 -13.24543 -13.14130 -12.92653 -12.73404 -12.57978 -12.17689 -11.90717 -11.61131 -11.49752 -11.00181 -10.92590 -10.51422 -10.21883 -10.08757 -9.67177 -9.43260 -9.01670 -8.82819 -8.55849 -8.47171 -8.21366 -7.95714 -6.06252 -4.15766 1.50569 2.27100 2.81553 3.24899 3.34037 3.35588 3.45853 3.81623 4.35584 4.53201 4.66031 4.76866 4.90869 5.12708 5.21817 5.30934 5.40051 5.41799 5.54774 5.63551 5.75302 5.92767 6.06018 6.07229 6.32363 6.37363 6.50557 6.62028 6.73213 6.78394 6.87887 6.94988 7.14356 7.35383 7.44010 7.48506 7.64848 7.82451 8.35926 8.68454 8.85719 9.22232 9.51146 11.00982 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.004035 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.492212 B = 6937.983976 C = 7705.580567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.011 3.989 3 O -0.177 6.177 4 C -0.050 4.050 5 C -0.193 4.193 6 C -0.199 4.199 7 C 0.214 3.786 8 N -0.751 5.751 9 C 0.698 3.302 10 O -0.605 6.605 11 N -0.721 5.721 12 C 0.182 3.818 13 C 0.024 3.976 14 C -0.498 4.498 15 H 0.059 0.941 16 C 0.073 3.927 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.202 0.798 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.394 0.606 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.581 13.603 7.455 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 O -0.073 6.073 4 C -0.117 4.117 5 C -0.213 4.213 6 C -0.201 4.201 7 C 0.090 3.910 8 N -0.408 5.408 9 C 0.397 3.603 10 O -0.484 6.484 11 N -0.373 5.373 12 C 0.059 3.941 13 C 0.023 3.977 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.219 0.781 28 H 0.167 0.833 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.227 0.773 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.203 13.000 8.393 18.003 hybrid contribution -0.464 0.950 -1.056 1.495 sum 8.739 13.950 7.336 18.022 Atomic orbital electron populations 1.20413 0.84788 1.04616 1.03835 1.22426 0.94068 0.83758 1.03753 1.84030 1.16939 1.34861 1.71454 1.23944 0.84237 0.95971 1.07542 1.21750 0.97672 0.94719 1.07147 1.20269 0.93139 0.95648 1.11020 1.19209 0.99773 0.88366 0.83671 1.45181 1.72662 1.12739 1.10213 1.16047 0.78436 0.81823 0.83957 1.90869 1.61961 1.51459 1.44147 1.45163 1.68956 1.16118 1.07081 1.20848 0.97288 0.79317 0.96690 1.19063 0.93442 0.96388 0.88796 1.20378 0.90191 1.05139 1.37851 0.92237 1.24988 0.98513 0.95049 0.94545 1.70004 1.19672 1.16895 1.44457 0.86582 0.82224 0.80966 0.78468 1.19779 1.21064 1.20968 1.23010 0.93420 1.07201 1.01195 1.22464 1.00671 0.91836 1.03024 0.89827 0.90378 0.88716 0.78115 0.83309 0.91131 0.91117 0.77286 0.77005 0.91728 0.94427 0.92948 0.90474 0.91741 0.91803 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.20 36.01 0.37 -0.35 16 2 C 0.01 0.12 7.32 -35.62 -0.26 -0.14 16 3 O -0.18 -1.91 10.65 5.70 0.06 -1.85 16 4 C -0.05 -0.44 12.09 29.41 0.36 -0.09 16 5 C -0.19 -1.94 10.87 -39.70 -0.43 -2.37 16 6 C -0.20 -2.27 5.53 -104.74 -0.58 -2.85 16 7 C 0.21 2.82 5.69 -5.20 -0.03 2.79 16 8 N -0.75 -10.95 5.55 -66.42 -0.37 -11.32 16 9 C 0.70 13.41 8.57 -86.91 -0.74 12.67 16 10 O -0.60 -13.96 16.34 5.30 0.09 -13.88 16 11 N -0.72 -14.17 5.48 -65.23 -0.36 -14.52 16 12 C 0.18 4.18 5.50 -4.04 -0.02 4.16 16 13 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 14 C -0.50 -12.75 8.59 -34.44 -0.30 -13.05 16 15 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 16 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 17 N -0.87 -24.19 12.65 55.43 0.70 -23.49 16 18 Si 0.89 20.46 29.54 -169.99 -5.02 15.43 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.21 -4.43 9.96 -26.69 -0.27 -4.70 16 23 C -0.14 -3.27 9.14 -26.69 -0.24 -3.51 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.92 7.87 -51.93 -0.41 0.52 16 27 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 28 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 29 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.39 4.97 8.48 -40.82 -0.35 4.62 16 32 H 0.40 7.11 8.35 -40.82 -0.34 6.77 16 33 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.98 340.21 -7.96 -38.94 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.71 Total: 10.82 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.48 Total: -5.27 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.03 Total: -49.34 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.15 Total: -15.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.98 -7.96 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.227 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds