Wall clock time and date at job start Tue Mar 31 2020 00:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.34300 * 125.78728 * 2 1 4 4 C 1.34310 * 109.47576 * 180.02562 * 3 2 1 5 5 C 1.34508 * 108.41669 * 359.72253 * 4 3 2 6 6 C 1.34508 * 125.78854 * 180.02562 * 2 1 3 7 7 C 1.50699 * 126.58174 * 359.96558 * 6 2 1 8 8 N 1.46497 * 109.47293 * 79.99939 * 7 6 2 9 9 C 1.34780 * 119.99719 * 179.97438 * 8 7 6 10 10 O 1.21578 * 120.00108 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99704 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46847 * 184.79711 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81434 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31518 * 119.99808 * 355.41947 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48760 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14904 * 13 12 11 24 24 H 1.08995 * 109.46573 * 269.95705 * 1 2 3 25 25 H 1.08991 * 109.47168 * 29.95850 * 1 2 3 26 26 H 1.09005 * 109.46721 * 149.95779 * 1 2 3 27 27 H 1.08002 * 125.78613 * 180.02562 * 4 3 2 28 28 H 1.08005 * 126.57843 * 180.26540 * 5 4 3 29 29 H 1.08996 * 109.47074 * 319.99817 * 7 6 2 30 30 H 1.09003 * 109.46911 * 200.00249 * 7 6 2 31 31 H 0.96996 * 119.99936 * 0.02562 * 8 7 6 32 32 H 0.97009 * 119.99753 * 0.02562 * 11 9 8 33 33 H 1.08993 * 109.47219 * 64.80231 * 12 11 9 34 34 H 1.09000 * 109.47241 * 304.79395 * 12 11 9 35 35 H 0.97001 * 119.99858 * 184.99726 * 17 16 14 36 36 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 37 37 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 38 38 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 39 39 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5815 0.7122 -0.0006 5 6 3.6309 -0.6320 0.0052 6 6 2.2937 -1.0911 -0.0005 7 6 1.8373 -2.5273 -0.0004 8 7 1.4601 -2.9200 -1.3604 9 6 1.0184 -4.1700 -1.6029 10 8 0.9334 -4.9719 -0.6930 11 7 0.6709 -4.5311 -2.8540 12 6 0.1903 -5.8897 -3.1175 13 6 -0.0195 -6.0736 -4.6219 14 6 -1.1028 -5.2248 -5.2357 15 1 -0.8524 -4.2826 -5.7006 16 6 -2.4130 -5.6536 -5.2088 17 7 -2.7061 -6.8425 -4.7290 18 14 -3.7717 -4.5458 -5.8539 19 1 -3.1835 -3.2704 -6.3361 20 1 -4.4717 -5.2226 -6.9752 21 1 -4.7400 -4.2640 -4.7639 22 6 1.2147 -6.3704 -5.4762 23 6 0.1918 -7.4750 -5.1984 24 1 -0.3632 -0.0008 1.0276 25 1 -0.3633 0.8903 -0.5131 26 1 -0.3633 -0.8897 -0.5145 27 1 4.4337 1.3757 -0.0003 28 1 4.5213 -1.2433 0.0104 29 1 0.9773 -2.6352 0.6606 30 1 2.6478 -3.1661 0.3507 31 1 1.5290 -2.2805 -2.0865 32 1 0.7391 -3.8914 -3.5801 33 1 -0.7541 -6.0483 -2.5970 34 1 0.9265 -6.6108 -2.7625 35 1 -3.6166 -7.1736 -4.7762 36 1 1.2429 -5.9518 -6.4822 37 1 2.1759 -6.4351 -4.9665 38 1 0.4807 -8.2658 -4.5062 39 1 -0.4530 -7.7831 -6.0215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619527581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:30 Heat of formation + Delta-G solvation = -17.795146 kcal Electronic energy + Delta-G solvation = -21145.872443 eV Core-core repulsion = 17862.056535 eV Total energy + Delta-G solvation = -3283.815908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.58083 -40.90039 -38.56749 -36.49346 -34.94548 -33.95436 -33.60530 -32.74599 -29.07496 -27.81940 -27.00952 -25.82748 -22.93209 -22.42292 -21.78595 -21.22062 -20.82253 -19.26732 -18.23849 -17.70351 -17.24764 -16.84143 -16.71816 -16.45928 -15.71426 -15.54526 -15.10735 -14.97309 -14.67988 -14.39550 -13.82057 -13.80569 -13.63946 -13.49145 -13.36031 -13.13428 -12.90016 -12.84513 -12.53733 -12.31124 -12.00378 -11.50443 -11.29887 -10.91950 -10.75099 -10.43085 -10.28506 -10.01752 -9.58680 -9.32453 -8.06831 -6.20880 0.71096 1.41350 1.42660 1.46467 1.55385 2.06166 2.14268 2.25434 2.44388 3.21280 3.40078 3.66957 3.77414 3.84998 3.94327 4.26926 4.41130 4.56085 4.58855 4.64327 4.65212 4.69107 4.76894 4.85319 4.88411 5.01388 5.05240 5.09483 5.31160 5.32332 5.48669 5.55987 5.58516 5.64906 5.74761 5.81194 6.14703 6.18825 6.39520 6.86626 7.23499 7.48685 7.68517 9.00389 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.004035 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.492212 B = 6937.983976 C = 7705.580567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.005 3.995 3 O -0.185 6.185 4 C -0.039 4.039 5 C -0.211 4.211 6 C -0.213 4.213 7 C 0.218 3.782 8 N -0.729 5.729 9 C 0.697 3.303 10 O -0.645 6.645 11 N -0.715 5.715 12 C 0.199 3.801 13 C 0.003 3.997 14 C -0.501 4.501 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.950 3.050 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.289 1.289 22 C -0.177 4.177 23 C -0.153 4.153 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.240 0.760 28 H 0.160 0.840 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.407 0.593 32 H 0.407 0.593 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 15.929 7.043 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 O -0.081 6.081 4 C -0.105 4.105 5 C -0.230 4.230 6 C -0.214 4.214 7 C 0.094 3.906 8 N -0.386 5.386 9 C 0.397 3.603 10 O -0.528 6.528 11 N -0.369 5.369 12 C 0.074 3.926 13 C 0.002 3.998 14 C -0.539 4.539 15 H 0.082 0.918 16 C -0.177 4.177 17 N -0.545 5.545 18 Si 0.776 3.224 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.215 1.215 22 C -0.215 4.215 23 C -0.191 4.191 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.256 0.744 28 H 0.178 0.822 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.242 0.758 32 H 0.242 0.758 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.474 15.391 7.959 20.246 hybrid contribution -0.783 0.269 -0.891 1.216 sum 9.692 15.659 7.067 19.725 Atomic orbital electron populations 1.20456 0.83905 1.04676 1.04625 1.22672 0.94786 0.83709 1.03429 1.84051 1.17792 1.34836 1.71468 1.24684 0.84322 0.96219 1.05270 1.21967 0.97422 0.95590 1.08038 1.20149 0.94244 0.94520 1.12533 1.19186 0.99283 0.89694 0.82432 1.45027 1.70980 1.11170 1.11415 1.16163 0.78252 0.82726 0.83156 1.90842 1.63629 1.53079 1.45243 1.44929 1.68953 1.15242 1.07742 1.20409 0.95267 0.80973 0.95907 1.19084 0.94894 0.96585 0.89198 1.20679 0.90785 1.05335 1.37126 0.91824 1.25703 1.00738 0.96104 0.95117 1.70126 1.19862 1.18522 1.46022 0.85634 0.79476 0.79718 0.77551 1.18491 1.21081 1.21518 1.22990 0.93172 1.04255 1.01037 1.22388 1.01783 0.92246 1.02700 0.88705 0.89090 0.89805 0.74381 0.82186 0.91826 0.91699 0.75780 0.75807 0.95791 0.94724 0.93258 0.89664 0.89541 0.91299 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.20 71.24 0.73 -0.60 16 2 C 0.01 0.11 7.32 24.83 0.18 0.29 16 3 O -0.19 -3.56 10.65 -2.52 -0.03 -3.59 16 4 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 5 C -0.21 -3.78 10.87 22.19 0.24 -3.54 16 6 C -0.21 -4.56 5.53 -19.94 -0.11 -4.67 16 7 C 0.22 5.62 5.69 85.63 0.49 6.11 16 8 N -0.73 -20.63 5.55 -482.31 -2.68 -23.31 16 9 C 0.70 26.65 8.57 179.05 1.53 28.18 16 10 O -0.65 -30.19 16.34 -3.96 -0.06 -30.25 16 11 N -0.72 -27.77 5.48 -478.54 -2.62 -30.40 16 12 C 0.20 9.24 5.50 86.38 0.48 9.72 16 13 C 0.00 0.15 1.47 -52.93 -0.08 0.07 16 14 C -0.50 -25.41 8.59 25.60 0.22 -25.19 16 15 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 16 C 0.02 1.26 5.43 84.66 0.46 1.72 16 17 N -0.91 -51.16 12.65 21.45 0.27 -50.89 16 18 Si 0.95 41.91 29.54 68.60 2.03 43.94 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 C -0.18 -7.11 9.96 30.62 0.30 -6.81 16 23 C -0.15 -7.04 9.14 30.62 0.28 -6.76 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.57 7.87 -2.38 -0.02 1.55 16 27 H 0.24 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.41 9.61 8.48 -92.71 -0.79 8.82 16 32 H 0.41 14.04 8.35 -92.70 -0.77 13.26 16 33 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.03 1.60 8.09 -2.39 -0.02 1.58 16 35 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 36 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.07 3.04 8.14 -2.39 -0.02 3.03 16 39 H 0.06 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -66.60 340.21 1.94 -64.65 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.49 Total: 31.08 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.53 Total: -1.24 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -5.03 Total: -104.60 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.09 Total: -33.84 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -66.60 1.94 -64.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.858 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds