Wall clock time and date at job start Tue Mar 31 2020 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38355 * 119.40481 * 2 1 4 4 C 1.38337 * 119.45688 * 180.02562 * 3 2 1 5 5 C 1.39979 * 118.34893 * 359.97438 * 4 3 2 6 6 C 1.47526 * 120.59625 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99920 * 179.72843 * 6 5 4 8 8 N 1.34777 * 120.00028 * 359.97438 * 6 5 4 9 9 C 1.46506 * 119.99880 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47042 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47233 * 300.00642 * 10 9 8 12 12 C 1.53001 * 109.46637 * 60.00124 * 10 9 8 13 13 C 1.50696 * 109.46923 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00202 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99742 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99985 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00083 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47086 * 59.99485 * 17 15 13 19 19 H 1.48494 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46819 * 299.99781 * 17 15 13 21 21 C 1.40282 * 118.80706 * 0.28117 * 5 4 3 22 22 O 1.35425 * 119.79892 * 179.72767 * 21 5 4 23 23 N 1.31875 * 119.40736 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46853 * 90.00444 * 1 2 3 25 25 H 1.09001 * 109.46982 * 210.00102 * 1 2 3 26 26 H 1.09003 * 109.47098 * 330.00386 * 1 2 3 27 27 H 1.08005 * 120.27514 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.82630 * 179.97438 * 4 3 2 29 29 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47564 * 300.00632 * 9 8 6 31 31 H 1.09000 * 109.46872 * 60.00429 * 9 8 6 32 32 H 1.09002 * 109.47398 * 59.99826 * 11 10 9 33 33 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.46968 * 299.99808 * 11 10 9 35 35 H 1.09004 * 109.47086 * 60.00158 * 12 10 9 36 36 H 1.09001 * 109.47109 * 179.97438 * 12 10 9 37 37 H 1.08992 * 109.47514 * 299.99871 * 12 10 9 38 38 H 0.96991 * 120.00238 * 180.02562 * 16 15 13 39 39 H 0.96699 * 114.00460 * 89.99929 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0247 -0.0005 6 6 5.7097 -0.0813 -0.0005 7 8 6.2769 -1.1568 0.0045 8 7 6.4278 1.0593 -0.0010 9 6 7.8918 1.0031 -0.0005 10 6 8.4567 2.4250 -0.0006 11 6 7.9751 3.1651 -1.2501 12 6 7.9742 3.1655 1.2483 13 6 9.9626 2.3672 -0.0007 14 1 10.4663 1.4119 -0.0010 15 6 10.6972 3.5341 -0.0003 16 7 10.0838 4.6974 -0.0003 17 14 12.5638 3.4625 -0.0010 18 1 13.0312 2.7447 -1.2141 19 1 13.1121 4.8426 -0.0011 20 1 13.0321 2.7433 1.2109 21 6 3.4758 -1.2040 -0.0060 22 8 4.0992 -2.4062 -0.0117 23 7 2.1546 -1.1488 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6411 2.1376 -0.0004 28 1 4.1223 2.1345 -0.0010 29 1 5.9754 1.9173 -0.0011 30 1 8.2349 0.4763 0.8899 31 1 8.2355 0.4752 -0.8900 32 1 6.8859 3.2068 -1.2505 33 1 8.3779 4.1779 -1.2505 34 1 8.3187 2.6375 -2.1399 35 1 8.3173 2.6383 2.1386 36 1 8.3770 4.1784 1.2485 37 1 6.8851 3.2073 1.2479 38 1 10.6005 5.5182 -0.0004 39 1 4.2804 -2.7596 0.8700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701235739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:51 Heat of formation + Delta-G solvation = -49.301261 kcal Electronic energy + Delta-G solvation = -21552.315645 eV Core-core repulsion = 18267.133529 eV Total energy + Delta-G solvation = -3285.182116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87349 -38.88567 -37.27310 -36.28929 -33.71397 -32.83982 -31.75352 -30.81072 -28.17653 -25.77902 -25.68628 -24.98086 -23.29555 -23.01164 -20.45276 -18.96633 -18.62935 -17.64338 -16.90275 -15.97981 -15.77082 -15.02833 -14.85569 -14.68966 -14.45052 -14.19867 -13.87824 -13.23795 -12.97488 -12.88301 -12.67461 -12.46207 -12.22682 -12.20687 -11.64124 -11.43074 -11.22931 -10.88002 -10.75716 -10.43486 -10.24376 -10.07095 -9.97508 -9.68244 -9.53172 -9.22564 -8.96854 -8.84002 -8.48295 -8.34390 -6.05311 -4.15470 0.49828 0.95314 2.96302 3.28519 3.32812 3.35005 3.38551 3.60236 3.79140 4.35155 4.37781 4.49313 4.69948 4.86717 5.14687 5.21561 5.23808 5.28705 5.35340 5.67102 5.75705 5.85176 6.16785 6.27190 6.28235 6.45690 6.72269 6.75872 6.87997 6.94883 6.97048 7.30230 7.46827 7.50690 7.65802 7.72000 7.96385 7.96548 8.10358 8.34388 8.60399 8.84943 9.50503 10.96162 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035165 B = 0.003772 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.054205 B = 7421.640585 C = 8018.834829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.191 4.191 4 C -0.027 4.027 5 C -0.203 4.203 6 C 0.551 3.449 7 O -0.531 6.531 8 N -0.711 5.711 9 C 0.132 3.868 10 C 0.056 3.944 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.508 4.508 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.371 3.629 22 O -0.459 6.459 23 N -0.511 5.511 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.395 0.605 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.004 0.996 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.237 -3.483 1.690 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.211 4.211 4 C -0.053 4.053 5 C -0.209 4.209 6 C 0.336 3.664 7 O -0.409 6.409 8 N -0.362 5.362 9 C 0.010 3.990 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.188 4.188 13 C -0.546 4.546 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.191 3.809 22 O -0.266 6.266 23 N -0.232 5.232 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.231 0.769 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -17.161 -4.808 1.100 17.856 hybrid contribution 1.370 1.131 0.421 1.826 sum -15.791 -3.677 1.522 16.285 Atomic orbital electron populations 1.20809 0.88265 1.03831 1.03516 1.21237 0.96984 0.87290 0.91578 1.21895 0.94491 0.99552 1.05161 1.21810 0.94562 0.97353 0.91531 1.21320 0.95748 0.94239 1.09625 1.17827 0.85609 0.84986 0.78018 1.90784 1.71707 1.28536 1.49848 1.46239 1.09139 1.07629 1.73197 1.21771 0.75687 1.00801 1.00738 1.18361 0.95292 0.87991 0.92835 1.21839 0.95199 1.04178 0.97658 1.21835 0.95186 1.04187 0.97628 1.20945 0.89819 0.92770 1.51077 0.92414 1.24876 0.98483 0.95380 0.94710 1.69782 1.35041 0.97201 1.50451 0.86619 0.85480 0.76969 0.78720 1.20252 1.21320 1.20256 1.19136 0.85977 0.85244 0.90553 1.84716 1.76387 1.31777 1.33748 1.67115 1.09457 1.30433 1.16159 0.89902 0.90178 0.90183 0.83798 0.83775 0.76860 0.92477 0.92461 0.97665 0.89511 0.95343 0.95366 0.89511 0.97666 0.92917 0.73618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 36.01 0.37 -0.36 16 2 C 0.17 1.78 6.78 -82.53 -0.56 1.22 16 3 C -0.19 -1.84 9.71 -39.50 -0.38 -2.22 16 4 C -0.03 -0.31 9.64 -38.89 -0.37 -0.68 16 5 C -0.20 -3.01 5.90 -104.69 -0.62 -3.62 16 6 C 0.55 9.89 7.77 -12.47 -0.10 9.79 16 7 O -0.53 -11.15 15.19 -16.49 -0.25 -11.40 16 8 N -0.71 -12.62 4.91 -61.35 -0.30 -12.92 16 9 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 10 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 11 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 12 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 13 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.25 9.35 55.43 0.52 -22.73 16 17 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.37 5.55 7.77 -16.61 -0.13 5.42 16 22 O -0.46 -6.93 11.66 -39.74 -0.46 -7.39 16 23 N -0.51 -6.95 10.28 -9.21 -0.09 -7.04 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 28 H 0.14 1.42 6.52 -52.49 -0.34 1.07 16 29 H 0.40 6.21 4.26 -40.82 -0.17 6.04 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 33 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 37 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 38 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.40 4.39 9.06 45.56 0.41 4.80 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -30.82 321.04 -6.80 -37.62 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.37 Total: 6.96 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.66 Total: -3.44 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.12 Total: -42.69 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.71 Total: -18.80 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.82 -6.80 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701235739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.684 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds