Wall clock time and date at job start Tue Mar 31 2020 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38355 * 119.40481 * 2 1 4 4 C 1.38337 * 119.45688 * 180.02562 * 3 2 1 5 5 C 1.39979 * 118.34893 * 359.97438 * 4 3 2 6 6 C 1.47526 * 120.59625 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99920 * 179.72843 * 6 5 4 8 8 N 1.34777 * 120.00028 * 359.97438 * 6 5 4 9 9 C 1.46506 * 119.99880 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47042 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47233 * 300.00642 * 10 9 8 12 12 C 1.53001 * 109.46637 * 60.00124 * 10 9 8 13 13 C 1.50696 * 109.46923 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00202 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99742 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99985 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00083 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47086 * 59.99485 * 17 15 13 19 19 H 1.48494 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46819 * 299.99781 * 17 15 13 21 21 C 1.40282 * 118.80706 * 0.28117 * 5 4 3 22 22 O 1.35425 * 119.79892 * 179.72767 * 21 5 4 23 23 N 1.31875 * 119.40736 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46853 * 90.00444 * 1 2 3 25 25 H 1.09001 * 109.46982 * 210.00102 * 1 2 3 26 26 H 1.09003 * 109.47098 * 330.00386 * 1 2 3 27 27 H 1.08005 * 120.27514 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.82630 * 179.97438 * 4 3 2 29 29 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47564 * 300.00632 * 9 8 6 31 31 H 1.09000 * 109.46872 * 60.00429 * 9 8 6 32 32 H 1.09002 * 109.47398 * 59.99826 * 11 10 9 33 33 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.46968 * 299.99808 * 11 10 9 35 35 H 1.09004 * 109.47086 * 60.00158 * 12 10 9 36 36 H 1.09001 * 109.47109 * 179.97438 * 12 10 9 37 37 H 1.08992 * 109.47514 * 299.99871 * 12 10 9 38 38 H 0.96991 * 120.00238 * 180.02562 * 16 15 13 39 39 H 0.96699 * 114.00460 * 89.99929 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0247 -0.0005 6 6 5.7097 -0.0813 -0.0005 7 8 6.2769 -1.1568 0.0045 8 7 6.4278 1.0593 -0.0010 9 6 7.8918 1.0031 -0.0005 10 6 8.4567 2.4250 -0.0006 11 6 7.9751 3.1651 -1.2501 12 6 7.9742 3.1655 1.2483 13 6 9.9626 2.3672 -0.0007 14 1 10.4663 1.4119 -0.0010 15 6 10.6972 3.5341 -0.0003 16 7 10.0838 4.6974 -0.0003 17 14 12.5638 3.4625 -0.0010 18 1 13.0312 2.7447 -1.2141 19 1 13.1121 4.8426 -0.0011 20 1 13.0321 2.7433 1.2109 21 6 3.4758 -1.2040 -0.0060 22 8 4.0992 -2.4062 -0.0117 23 7 2.1546 -1.1488 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6411 2.1376 -0.0004 28 1 4.1223 2.1345 -0.0010 29 1 5.9754 1.9173 -0.0011 30 1 8.2349 0.4763 0.8899 31 1 8.2355 0.4752 -0.8900 32 1 6.8859 3.2068 -1.2505 33 1 8.3779 4.1779 -1.2505 34 1 8.3187 2.6375 -2.1399 35 1 8.3173 2.6383 2.1386 36 1 8.3770 4.1784 1.2485 37 1 6.8851 3.2073 1.2479 38 1 10.6005 5.5182 -0.0004 39 1 4.2804 -2.7596 0.8700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701235739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:51 Heat of formation + Delta-G solvation = -71.493337 kcal Electronic energy + Delta-G solvation = -21553.277965 eV Core-core repulsion = 18267.133529 eV Total energy + Delta-G solvation = -3286.144436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91722 -40.25678 -38.39681 -37.92508 -35.17914 -34.10404 -32.60207 -32.54473 -29.09567 -27.56883 -27.45003 -26.68981 -24.29418 -23.99567 -21.79904 -20.66260 -19.73099 -18.96120 -17.95424 -17.76625 -16.92180 -16.60977 -16.36699 -16.12008 -15.53945 -15.31408 -14.83417 -14.80837 -14.50990 -14.25175 -13.91959 -13.57355 -13.22286 -13.10015 -13.07849 -12.99279 -12.67933 -12.63342 -12.61160 -12.25610 -12.13592 -11.49543 -11.32864 -11.15292 -11.01677 -10.72807 -10.45701 -10.39959 -10.08350 -9.77236 -8.02729 -6.18243 -0.48492 0.06376 1.44167 1.45602 1.51925 1.80415 2.15132 2.45772 2.49252 2.73552 3.21002 3.49472 3.67339 3.72674 3.94942 4.26319 4.43354 4.44698 4.49487 4.68178 4.70947 4.83005 4.92249 4.96985 5.04221 5.05734 5.09508 5.16140 5.18592 5.32691 5.51672 5.54550 5.66736 5.67216 6.15075 6.20417 6.42989 6.49833 6.59642 6.81697 6.85176 7.21332 7.49355 8.96013 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035165 B = 0.003772 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.054205 B = 7421.640585 C = 8018.834829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.176 4.176 4 C -0.023 4.023 5 C -0.227 4.227 6 C 0.552 3.448 7 O -0.570 6.570 8 N -0.703 5.703 9 C 0.148 3.852 10 C 0.052 3.948 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.532 4.532 14 H 0.044 0.956 15 C 0.031 3.969 16 N -0.897 5.897 17 Si 0.944 3.056 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.355 3.645 22 O -0.480 6.480 23 N -0.532 5.532 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.189 0.811 28 H 0.164 0.836 29 H 0.407 0.593 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.018 0.982 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.261 0.739 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -2.045 1.792 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.027 3.973 3 C -0.195 4.195 4 C -0.049 4.049 5 C -0.234 4.234 6 C 0.339 3.661 7 O -0.451 6.451 8 N -0.355 5.355 9 C 0.025 3.975 10 C 0.051 3.949 11 C -0.179 4.179 12 C -0.178 4.178 13 C -0.571 4.571 14 H 0.062 0.938 15 C -0.170 4.170 16 N -0.536 5.536 17 Si 0.771 3.229 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.203 1.203 21 C 0.175 3.825 22 O -0.290 6.290 23 N -0.253 5.253 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.206 0.794 28 H 0.182 0.818 29 H 0.246 0.754 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -19.647 -3.350 1.210 19.967 hybrid contribution 2.001 0.680 0.392 2.149 sum -17.646 -2.671 1.602 17.918 Atomic orbital electron populations 1.20969 0.85319 1.05263 1.04697 1.22059 0.98888 0.86922 0.89386 1.22354 0.93625 1.00895 1.02668 1.22094 0.95707 0.96608 0.90504 1.21049 0.93451 0.95847 1.13004 1.18299 0.87067 0.84126 0.76620 1.90755 1.72889 1.29895 1.51562 1.45989 1.07630 1.08435 1.73439 1.21327 0.77741 0.99329 0.99128 1.18358 0.93889 0.88994 0.93649 1.21686 0.97207 1.02332 0.96704 1.21673 0.97235 1.02299 0.96635 1.21251 0.91922 0.92363 1.51545 0.93791 1.25419 1.01651 0.95256 0.94625 1.69880 1.35899 0.97314 1.50478 0.85841 0.81735 0.76979 0.78390 1.20414 1.20729 1.20281 1.19297 0.86697 0.85067 0.91441 1.84658 1.76786 1.32449 1.35082 1.67197 1.08690 1.32211 1.17210 0.88602 0.90512 0.87048 0.79423 0.81809 0.75436 0.93991 0.94374 0.94327 0.91673 0.96482 0.96285 0.91723 0.94261 0.92957 0.72349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.16 71.24 0.72 -0.28 16 2 C 0.17 2.98 6.78 42.58 0.29 3.27 16 3 C -0.18 -2.61 9.71 22.32 0.22 -2.39 16 4 C -0.02 -0.47 9.64 22.72 0.22 -0.25 16 5 C -0.23 -6.50 5.90 -19.91 -0.12 -6.62 16 6 C 0.55 19.81 7.77 86.69 0.67 20.49 16 7 O -0.57 -24.73 15.19 16.80 0.26 -24.48 16 8 N -0.70 -24.40 4.91 -466.26 -2.29 -26.69 16 9 C 0.15 6.31 4.50 86.38 0.39 6.70 16 10 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 11 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 12 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 13 C -0.53 -27.98 8.01 25.60 0.21 -27.77 16 14 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 15 C 0.03 1.59 5.15 84.66 0.44 2.03 16 16 N -0.90 -46.98 9.35 21.45 0.20 -46.78 16 17 Si 0.94 42.29 29.54 68.60 2.03 44.32 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 C 0.35 10.51 7.77 85.13 0.66 11.17 16 22 O -0.48 -15.01 11.66 -66.39 -0.77 -15.79 16 23 N -0.53 -13.74 10.28 -296.05 -3.04 -16.78 16 24 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.40 8.07 -2.39 -0.02 0.38 16 27 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.16 2.54 6.52 -2.91 -0.02 2.52 16 29 H 0.41 11.85 4.26 -92.71 -0.40 11.45 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 33 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 37 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 38 H 0.26 13.20 8.31 -92.71 -0.77 12.42 16 39 H 0.42 9.66 9.06 -74.06 -0.67 8.99 16 Total: -1.00 -68.30 321.04 1.23 -67.07 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.02 Total: 19.76 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.83 Total: -0.63 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -5.13 Total: -90.25 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.52 Total: -40.27 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.30 1.23 -67.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701235739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.422 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds