Wall clock time and date at job start Tue Mar 31 2020 01:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35132 * 126.43919 * 2 1 4 4 O 1.33929 * 108.76896 * 180.02562 * 3 2 1 5 5 C 1.34911 * 109.38515 * 0.02562 * 4 3 2 6 6 C 1.46651 * 125.99094 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00314 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99844 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99932 * 179.72759 * 8 6 5 10 10 C 1.53040 * 109.46036 * 275.33883 * 9 8 6 11 11 C 1.53191 * 109.31289 * 178.61215 * 10 9 8 12 12 N 1.46928 * 108.77479 * 54.64030 * 11 10 9 13 13 C 1.36934 * 120.62898 * 126.41024 * 12 11 10 14 14 H 1.08002 * 120.00167 * 331.82213 * 13 12 11 15 15 C 1.38815 * 119.99790 * 151.82739 * 13 12 11 16 16 N 1.31615 * 120.00111 * 343.07591 * 15 13 12 17 17 Si 1.86807 * 119.99828 * 163.07221 * 15 13 12 18 18 H 1.48499 * 109.47034 * 90.00467 * 17 15 13 19 19 H 1.48498 * 109.46946 * 209.99998 * 17 15 13 20 20 H 1.48499 * 109.47200 * 329.99927 * 17 15 13 21 21 C 1.46925 * 118.73682 * 306.39004 * 12 11 10 22 22 C 1.53049 * 109.45902 * 155.27647 * 9 8 6 23 23 C 1.36546 * 108.02185 * 0.22822 * 5 4 3 24 24 H 1.09009 * 109.47093 * 89.97914 * 1 2 3 25 25 H 1.09005 * 109.47074 * 209.97072 * 1 2 3 26 26 H 1.08995 * 109.47847 * 329.97193 * 1 2 3 27 27 H 1.08001 * 125.61587 * 0.02562 * 3 2 1 28 28 H 0.96995 * 120.00006 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.46101 * 35.30203 * 9 8 6 30 30 H 1.08994 * 109.50396 * 298.57120 * 10 9 8 31 31 H 1.09009 * 109.49298 * 58.66714 * 10 9 8 32 32 H 1.08995 * 109.59104 * 294.85253 * 11 10 9 33 33 H 1.09001 * 109.70591 * 174.49450 * 11 10 9 34 34 H 0.97004 * 120.00052 * 180.02562 * 16 15 13 35 35 H 1.08989 * 109.58888 * 293.81744 * 21 12 11 36 36 H 1.09001 * 109.70076 * 173.46407 * 21 12 11 37 37 H 1.09000 * 109.49522 * 301.33191 * 22 9 8 38 38 H 1.08995 * 109.49634 * 61.43255 * 22 9 8 39 39 H 1.07999 * 126.64508 * 179.77839 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6806 -0.0006 5 6 3.6261 -0.6679 -0.0015 6 6 4.8379 -1.4938 -0.0029 7 8 4.7472 -2.7074 -0.0041 8 7 6.0521 -0.9088 -0.0028 9 6 7.2627 -1.7338 0.0019 10 6 7.6060 -2.1273 1.4404 11 6 8.8521 -3.0183 1.4383 12 7 9.9326 -2.3186 0.7300 13 6 11.1532 -2.1375 1.3236 14 1 11.2264 -2.0735 2.3992 15 6 12.2965 -2.0359 0.5428 16 7 12.2752 -2.4371 -0.7105 17 14 13.8651 -1.3296 1.2710 18 1 14.6707 -2.4251 1.8679 19 1 14.6510 -0.6634 0.2016 20 1 13.5205 -0.3390 2.3223 21 6 9.6786 -1.8174 -0.6276 22 6 8.4232 -0.9398 -0.6023 23 6 2.3408 -1.1290 -0.0067 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8897 0.5142 27 1 1.9768 2.1146 0.0004 28 1 6.1244 0.0584 -0.0022 29 1 7.0914 -2.6333 -0.5894 30 1 7.8018 -1.2293 2.0264 31 1 6.7696 -2.6726 1.8779 32 1 8.6297 -3.9565 0.9301 33 1 9.1598 -3.2223 2.4639 34 1 13.0743 -2.3665 -1.2560 35 1 9.5235 -2.6576 -1.3043 36 1 10.5300 -1.2274 -0.9668 37 1 8.1685 -0.6399 -1.6188 38 1 8.6112 -0.0530 0.0029 39 1 2.0267 -2.1623 -0.0121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718502704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:51 Heat of formation + Delta-G solvation = -28.826591 kcal Electronic energy + Delta-G solvation = -21354.460174 eV Core-core repulsion = 18070.165907 eV Total energy + Delta-G solvation = -3284.294267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.70078 -40.89582 -38.96586 -36.16140 -35.15492 -33.98375 -32.09719 -31.62583 -30.91697 -28.22041 -26.99806 -24.87964 -23.93287 -23.10798 -22.15207 -21.27959 -20.66764 -19.14251 -18.54685 -17.43548 -17.37564 -17.16295 -16.73444 -15.83980 -15.68757 -15.38540 -15.19077 -14.78804 -14.47721 -14.31159 -14.14529 -14.03887 -13.93368 -13.51581 -13.23823 -13.03282 -12.64622 -12.55110 -12.54508 -12.29571 -12.04676 -11.89929 -11.65657 -11.49458 -11.24687 -10.73848 -10.56914 -10.20356 -9.54634 -8.72118 -7.88771 -5.34439 0.00816 1.34000 1.48222 1.49448 1.59578 1.64429 2.06852 2.18495 2.51660 3.27483 3.60179 3.67678 3.82381 3.85235 3.99032 4.06020 4.27725 4.34980 4.42807 4.61755 4.65634 4.74255 4.81843 4.89368 4.91851 4.97391 5.00799 5.04987 5.09548 5.11411 5.26402 5.38411 5.44683 5.52014 5.63527 5.68852 5.84529 6.37895 6.43647 6.98969 7.13478 7.82657 8.35799 9.18627 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046684 B = 0.003248 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.631607 B = 8617.834078 C = 8790.902694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.007 3.993 4 O -0.168 6.168 5 C -0.101 4.101 6 C 0.598 3.402 7 O -0.562 6.562 8 N -0.700 5.700 9 C 0.160 3.840 10 C -0.125 4.125 11 C 0.145 3.855 12 N -0.609 5.609 13 C -0.265 4.265 14 H 0.068 0.932 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.269 1.269 21 C 0.180 3.820 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.254 0.746 28 H 0.414 0.586 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.010 0.990 33 H 0.060 0.940 34 H 0.251 0.749 35 H -0.003 1.003 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.417 10.469 0.933 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.063 4.063 4 O -0.063 6.063 5 C -0.153 4.153 6 C 0.386 3.614 7 O -0.443 6.443 8 N -0.350 5.350 9 C 0.056 3.944 10 C -0.166 4.166 11 C 0.019 3.981 12 N -0.333 5.333 13 C -0.395 4.395 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.581 5.581 17 Si 0.797 3.203 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.194 1.194 21 C 0.053 3.947 22 C -0.169 4.169 23 C -0.146 4.146 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.270 0.730 28 H 0.251 0.749 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.015 0.985 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.044 9.788 0.827 24.134 hybrid contribution 1.081 0.093 0.071 1.088 sum -20.963 9.881 0.898 23.192 Atomic orbital electron populations 1.20259 0.86423 1.03917 1.03175 1.20859 0.99245 0.91584 1.09159 1.25151 0.78657 1.01744 1.00717 1.84056 1.30886 1.20648 1.70709 1.21730 0.95554 0.81357 1.16652 1.16861 0.82071 0.86260 0.76239 1.90856 1.86629 1.14002 1.52860 1.46006 1.04665 1.11204 1.73100 1.20794 0.82951 0.93803 0.96835 1.22198 0.97695 1.00498 0.96159 1.20958 0.87993 0.92812 0.96318 1.44352 1.09746 1.64236 1.14961 1.19514 0.84505 1.43612 0.91859 0.91462 1.25829 1.00545 1.01085 0.97033 1.70180 1.29018 1.49963 1.08982 0.85254 0.79395 0.78241 0.77392 1.21300 1.21731 1.19391 1.20554 0.94578 0.94270 0.85279 1.22277 0.94604 0.99142 1.00843 1.22096 0.90828 1.01457 1.00175 0.90456 0.91368 0.89299 0.73018 0.74902 0.91737 0.91466 0.92018 0.97215 0.92186 0.93966 0.98528 0.91704 0.90429 0.91092 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 71.23 0.74 -0.01 16 2 C -0.21 -3.30 6.14 -20.06 -0.12 -3.43 16 3 C 0.01 0.09 12.00 67.10 0.81 0.89 16 4 O -0.17 -3.44 10.40 -4.99 -0.05 -3.49 16 5 C -0.10 -2.61 7.13 24.07 0.17 -2.44 16 6 C 0.60 18.91 7.75 86.44 0.67 19.57 16 7 O -0.56 -21.80 16.53 -4.34 -0.07 -21.87 16 8 N -0.70 -20.49 5.07 -446.38 -2.27 -22.75 16 9 C 0.16 5.64 2.41 45.02 0.11 5.75 16 10 C -0.13 -4.60 5.65 30.67 0.17 -4.43 16 11 C 0.15 6.37 6.52 86.36 0.56 6.93 16 12 N -0.61 -31.05 2.99 -699.11 -2.09 -33.14 16 13 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 14 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 15 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 16 N -0.94 -55.32 11.19 21.65 0.24 -55.07 16 17 Si 0.97 44.60 29.59 68.60 2.03 46.63 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.18 8.64 5.30 86.36 0.46 9.10 16 22 C -0.13 -4.70 5.55 30.68 0.17 -4.53 16 23 C -0.12 -2.84 10.57 22.39 0.24 -2.61 16 24 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 25 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.25 0.81 8.06 -2.91 -0.02 0.78 16 28 H 0.41 9.94 8.36 -92.71 -0.77 9.17 16 29 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 34 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 35 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 39 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -69.91 326.52 3.26 -66.64 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.28 Total: 14.42 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.20 Total: 8.65 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.12 Total: -110.96 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.12 Total: -25.37 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.91 3.26 -66.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718502704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.816 kcal (2) G-P(sol) polarization free energy of solvation -69.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds