Wall clock time and date at job start Mon Mar 30 2020 23:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36015 * 116.99815 * 2 1 4 4 C 1.38503 * 120.08295 * 0.26290 * 3 2 1 5 5 C 1.38278 * 120.02167 * 180.27962 * 4 3 2 6 6 C 1.38254 * 120.17821 * 359.45175 * 5 4 3 7 7 C 1.38228 * 120.15929 * 0.27517 * 6 5 4 8 8 C 1.50704 * 120.00749 * 179.97438 * 7 6 5 9 9 C 1.38727 * 119.98127 * 0.02562 * 7 6 5 10 10 N 1.39961 * 120.08961 * 179.97438 * 9 7 6 11 11 C 1.46900 * 110.99563 * 120.00119 * 10 9 7 12 12 C 1.50703 * 109.47282 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99651 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00266 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99899 * 179.97438 * 14 12 11 16 16 C 1.50690 * 109.47079 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00265 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00208 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00252 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00216 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47461 * 120.00024 * 20 18 16 23 23 H 1.48505 * 109.46769 * 239.99985 * 20 18 16 24 24 H 1.08995 * 109.47805 * 300.00480 * 1 2 3 25 25 H 1.09001 * 109.47324 * 60.00792 * 1 2 3 26 26 H 1.09005 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08008 * 119.98985 * 0.03274 * 4 3 2 28 28 H 1.08002 * 119.91540 * 179.73274 * 5 4 3 29 29 H 1.08006 * 119.92326 * 180.29806 * 6 5 4 30 30 H 1.09003 * 109.46886 * 90.00797 * 8 7 6 31 31 H 1.08999 * 109.46831 * 209.99647 * 8 7 6 32 32 H 1.08994 * 109.47749 * 330.00603 * 8 7 6 33 33 H 1.00897 * 111.00366 * 356.04948 * 10 9 7 34 34 H 1.09007 * 109.47313 * 300.00147 * 11 10 9 35 35 H 1.08998 * 109.47384 * 60.00135 * 11 10 9 36 36 H 0.96994 * 119.99949 * 359.97438 * 14 12 11 37 37 H 1.08996 * 109.46923 * 299.99825 * 15 14 12 38 38 H 1.08998 * 109.46950 * 59.99795 * 15 14 12 39 39 H 0.97001 * 120.00674 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2937 2.3746 0.0055 5 6 1.9227 3.6060 -0.0004 6 6 3.3032 3.6812 -0.0003 7 6 4.0617 2.5257 -0.0001 8 6 5.5663 2.6117 -0.0005 9 6 3.4376 1.2867 -0.0005 10 7 4.2033 0.1152 -0.0008 11 6 3.9173 -0.7009 1.1866 12 6 4.7588 -1.9507 1.1519 13 8 5.5213 -2.1427 0.2286 14 7 4.6632 -2.8554 2.1463 15 6 5.4808 -4.0705 2.1122 16 6 5.1875 -4.9077 3.3303 17 1 4.4640 -4.5688 4.0571 18 6 5.8427 -6.1063 3.5171 19 7 6.7233 -6.5193 2.6320 20 14 5.4785 -7.1445 5.0268 21 1 4.4566 -6.4630 5.8614 22 1 4.9666 -8.4724 4.6028 23 1 6.7233 -7.3230 5.8168 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 0.2151 2.3194 0.0103 28 1 1.3341 4.5115 -0.0004 29 1 3.7902 4.6453 0.0000 30 1 5.9293 2.6327 1.0271 31 1 5.9796 1.7437 -0.5141 32 1 5.8782 3.5207 -0.5147 33 1 5.1878 0.3267 -0.0656 34 1 4.1521 -0.1301 2.0851 35 1 2.8619 -0.9733 1.1947 36 1 4.0530 -2.7019 2.8845 37 1 5.2463 -4.6411 1.2136 38 1 6.5362 -3.7981 2.1045 39 1 7.1840 -7.3628 2.7632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766762858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:59 Heat of formation + Delta-G solvation = -48.299797 kcal Electronic energy + Delta-G solvation = -21131.281624 eV Core-core repulsion = 17846.142935 eV Total energy + Delta-G solvation = -3285.138689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60462 -38.76246 -37.84197 -35.44912 -34.10071 -32.35580 -32.19012 -29.84120 -27.91839 -27.59789 -26.68263 -25.44824 -22.53818 -21.66597 -21.26376 -19.68329 -17.86170 -17.58118 -16.63562 -16.40147 -15.83317 -15.38822 -15.30335 -14.90676 -14.68320 -14.32195 -14.15174 -13.82753 -13.73333 -13.18198 -12.86172 -12.46293 -12.43443 -12.31369 -12.02049 -11.92496 -11.73745 -11.47810 -11.05794 -10.98603 -10.94310 -10.89029 -10.31173 -9.90075 -9.36764 -8.94808 -8.72833 -8.48948 -7.86196 -7.61697 -6.15575 -4.22373 1.16773 1.34447 3.16631 3.24055 3.30970 3.34104 3.41455 3.51932 3.88567 4.29083 4.43836 4.66850 4.73985 4.92973 5.03124 5.07806 5.12814 5.15311 5.20498 5.37735 5.39378 5.44428 5.47089 5.55598 5.59932 5.79551 5.91727 6.02151 6.22801 6.40379 6.58304 6.92179 7.20897 7.34017 7.45685 7.53833 7.54752 7.68655 7.98344 8.64471 8.79758 9.12245 9.44273 10.94690 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.003465 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.880956 B = 8079.712050 C = 8700.460561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.111 3.889 4 C -0.192 4.192 5 C -0.109 4.109 6 C -0.131 4.131 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.092 3.908 10 N -0.609 5.609 11 C 0.040 3.960 12 C 0.498 3.502 13 O -0.545 6.545 14 N -0.712 5.712 15 C 0.250 3.750 16 C -0.542 4.542 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.364 0.636 34 H 0.060 0.940 35 H 0.114 0.886 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 20.445 -2.890 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.063 3.937 4 C -0.212 4.212 5 C -0.128 4.128 6 C -0.150 4.150 7 C -0.106 4.106 8 C -0.176 4.176 9 C -0.008 4.008 10 N -0.236 5.236 11 C -0.090 4.090 12 C 0.282 3.718 13 O -0.423 6.423 14 N -0.361 5.361 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.189 0.811 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.223 0.777 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.899 19.475 -3.982 22.670 hybrid contribution -0.352 0.030 1.665 1.702 sum -11.251 19.505 -2.317 22.636 Atomic orbital electron populations 1.23061 0.78946 1.04022 1.00932 1.86221 1.20730 1.26101 1.88573 1.18606 0.90505 0.84740 0.99807 1.21069 0.99774 0.92042 1.08279 1.20781 0.94456 0.96781 1.00748 1.20767 0.93606 0.97388 1.03260 1.19842 0.96259 0.91735 1.02731 1.20780 0.90782 1.03312 1.02714 1.18047 0.89750 0.89504 1.03470 1.57118 1.12184 1.15627 1.38717 1.22014 1.02621 0.93567 0.90757 1.20281 0.83574 0.84819 0.83100 1.90665 1.39322 1.77752 1.34581 1.46415 1.43764 1.22613 1.23352 1.19105 0.90443 0.79941 0.97557 1.21265 1.24699 1.05102 1.06991 0.91845 1.24958 0.94739 0.97452 0.96919 1.69985 1.25738 1.21710 1.34840 0.86362 0.78201 0.80067 0.82275 1.19639 1.20791 1.20815 0.92913 0.92860 0.88183 0.85484 0.86058 0.86007 0.90906 0.90958 0.90767 0.81112 0.92235 0.86836 0.77741 0.95470 0.95557 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.03 8.07 -19.79 -0.16 -4.19 16 3 C 0.11 1.45 6.44 -39.08 -0.25 1.20 16 4 C -0.19 -2.02 9.04 -39.47 -0.36 -2.38 16 5 C -0.11 -1.04 10.04 -39.56 -0.40 -1.43 16 6 C -0.13 -1.31 9.69 -39.58 -0.38 -1.70 16 7 C -0.10 -1.19 5.90 -104.44 -0.62 -1.80 16 8 C -0.12 -1.16 9.49 36.01 0.34 -0.81 16 9 C 0.09 1.28 5.77 -83.56 -0.48 0.80 16 10 N -0.61 -9.65 6.09 -59.39 -0.36 -10.01 16 11 C 0.04 0.64 5.82 -4.97 -0.03 0.61 16 12 C 0.50 10.33 7.87 -10.98 -0.09 10.24 16 13 O -0.54 -13.49 16.20 5.55 0.09 -13.40 16 14 N -0.71 -15.32 5.55 -61.48 -0.34 -15.67 16 15 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 16 C -0.54 -14.83 9.28 -34.45 -0.32 -15.15 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 25 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.76 6.26 -51.93 -0.32 0.44 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.36 5.60 5.63 -39.29 -0.22 5.38 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.11 1.75 5.89 -51.93 -0.31 1.45 16 36 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -33.74 328.62 -7.05 -40.79 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.23 Total: 8.00 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.71 Total: -0.86 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.03 Total: -51.20 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.07 Total: -17.58 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.74 -7.05 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766762858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.514 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds