Wall clock time and date at job start Tue Mar 31 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35336 * 126.38166 * 2 1 4 4 C 1.41568 * 105.50478 * 180.22929 * 3 2 1 5 5 C 1.47531 * 126.52557 * 179.79357 * 4 3 2 6 6 O 1.21523 * 120.00407 * 0.02562 * 5 4 3 7 7 O 1.34759 * 119.99808 * 179.97438 * 5 4 3 8 8 C 1.34859 * 117.00158 * 180.02562 * 7 5 4 9 9 H 1.08003 * 119.99970 * 0.02562 * 8 7 5 10 10 C 1.38796 * 120.00254 * 179.97438 * 8 7 5 11 11 N 1.31425 * 120.00046 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 119.99788 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47566 * 89.99664 * 12 10 8 14 14 H 1.48506 * 109.46944 * 209.99600 * 12 10 8 15 15 H 1.48501 * 109.47320 * 329.99231 * 12 10 8 16 16 N 1.31885 * 106.94516 * 359.77879 * 4 3 2 17 17 N 1.28470 * 110.05562 * 359.97438 * 16 4 3 18 18 C 1.46500 * 124.87238 * 179.97438 * 17 16 4 19 19 C 1.52997 * 109.47473 * 60.02318 * 18 17 16 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09002 * 109.46866 * 270.14975 * 1 2 3 25 25 H 1.09002 * 109.46750 * 30.14083 * 1 2 3 26 26 H 1.08992 * 109.47610 * 150.14729 * 1 2 3 27 27 H 1.08000 * 127.24659 * 0.02562 * 3 2 1 28 28 H 0.96998 * 119.99680 * 180.02562 * 11 10 8 29 29 H 1.08998 * 109.46845 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 31 31 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 32 32 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 34 34 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 35 35 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 38 38 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 39 39 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0896 0.0000 4 6 3.6325 0.5851 -0.0055 5 6 4.8754 1.3799 -0.0118 6 8 4.8204 2.5939 -0.0123 7 8 6.0718 0.7596 -0.0161 8 6 7.1684 1.5446 -0.0213 9 1 7.0631 2.6195 -0.0215 10 6 8.4323 0.9711 -0.0254 11 7 9.5010 1.7361 -0.0299 12 14 8.6144 -0.8879 -0.0243 13 1 8.6575 -1.3820 -1.4240 14 1 9.8720 -1.2617 0.6715 15 1 7.4586 -1.4981 0.6807 16 7 3.5421 -0.7307 -0.0034 17 7 2.3079 -1.0874 0.0032 18 6 1.8371 -2.4747 0.0067 19 6 2.3621 -3.1884 1.2541 20 6 1.8708 -4.6374 1.2573 21 6 2.3844 -5.3529 0.0063 22 6 1.8593 -4.6392 -1.2411 23 6 2.3506 -3.1903 -1.2444 24 1 -0.3633 0.0027 1.0277 25 1 -0.3633 0.8888 -0.5160 26 1 -0.3634 -0.8912 -0.5115 27 1 2.0054 2.1258 0.0004 28 1 10.3843 1.3353 -0.0331 29 1 0.7472 -2.4884 0.0119 30 1 1.9966 -2.6784 2.1454 31 1 3.4520 -3.1747 1.2488 32 1 2.2445 -5.1457 2.1462 33 1 0.7809 -4.6515 1.2624 34 1 3.4742 -5.3388 0.0012 35 1 2.0347 -6.3853 0.0089 36 1 2.2248 -5.1492 -2.1324 37 1 0.7694 -4.6533 -1.2360 38 1 3.4405 -3.1761 -1.2494 39 1 1.9769 -2.6819 -2.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776436687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:10 Heat of formation + Delta-G solvation = -20.041570 kcal Electronic energy + Delta-G solvation = -21820.409794 eV Core-core repulsion = 18536.496474 eV Total energy + Delta-G solvation = -3283.913320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46796 -38.93853 -38.44394 -35.22448 -33.17687 -32.55696 -32.21372 -31.12117 -29.21491 -26.99416 -25.83999 -23.83048 -22.94961 -22.09731 -20.56713 -20.00974 -18.91727 -17.88593 -16.94282 -16.36108 -15.80213 -15.40674 -14.81293 -14.55600 -14.53933 -14.26172 -13.99001 -13.74685 -13.23167 -13.19471 -12.91143 -12.59139 -12.48860 -12.44799 -12.23088 -11.91750 -11.58383 -11.44462 -11.21909 -10.91612 -10.75395 -10.56100 -10.41709 -10.30877 -10.28772 -9.62478 -9.26404 -8.74488 -8.64271 -8.59986 -6.31907 -4.03751 2.03735 2.41458 2.57835 3.28612 3.31824 3.50100 4.11860 4.12536 4.26436 4.34789 4.37713 4.52282 4.66633 4.72841 4.87058 4.88814 4.98926 5.10261 5.16761 5.21432 5.24952 5.31083 5.38101 5.47809 5.65126 5.67957 5.75645 5.82262 5.88652 5.90983 5.91250 5.97316 6.13577 6.18393 6.38383 6.84946 7.07965 7.78821 8.09136 8.30456 8.70521 9.07059 9.79535 10.76070 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.005694 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.476673 B = 4916.076408 C = 6284.463226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.003 4.003 3 C -0.181 4.181 4 C 0.030 3.970 5 C 0.492 3.508 6 O -0.532 6.532 7 O -0.234 6.234 8 C -0.375 4.375 9 H 0.111 0.889 10 C 0.067 3.933 11 N -0.872 5.872 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.255 1.255 16 N -0.244 5.244 17 N -0.283 5.283 18 C 0.155 3.845 19 C -0.131 4.131 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.159 0.841 28 H 0.279 0.721 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.528 -15.234 0.120 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C -0.209 4.209 4 C -0.129 4.129 5 C 0.337 3.663 6 O -0.425 6.425 7 O -0.141 6.141 8 C -0.451 4.451 9 H 0.129 0.871 10 C -0.137 4.137 11 N -0.511 5.511 12 Si 0.727 3.273 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.179 1.179 16 N -0.079 5.079 17 N -0.072 5.072 18 C 0.054 3.946 19 C -0.169 4.169 20 C -0.152 4.152 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.169 4.169 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.177 0.823 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.675 -15.988 0.125 25.353 hybrid contribution -0.129 0.115 -0.021 0.174 sum -19.805 -15.873 0.104 25.381 Atomic orbital electron populations 1.20287 0.87160 1.03400 1.02887 1.21294 0.95096 0.86906 1.09313 1.21435 0.90349 0.99358 1.09743 1.21110 0.93246 0.89194 1.09333 1.19055 0.82605 0.85225 0.79429 1.90685 1.87156 1.14106 1.50598 1.83629 1.13666 1.40534 1.76248 1.20728 0.80827 0.92454 1.51139 0.87134 1.24527 0.93540 1.00118 0.95480 1.69604 0.98037 1.36090 1.47384 0.86238 0.78096 0.83864 0.79065 1.19870 1.20840 1.17902 1.73740 1.00756 1.15066 1.18310 1.45667 1.02984 1.06642 1.51940 1.21563 0.99151 0.76201 0.97668 1.21910 1.03270 0.95539 0.96156 1.21493 1.00701 0.94422 0.98549 1.21612 1.01548 0.98929 0.94209 1.21492 1.00663 0.94430 0.98579 1.21920 1.03337 0.95548 0.96136 0.90698 0.89743 0.91597 0.82293 0.91035 0.87815 0.91213 0.89758 0.91119 0.91774 0.91352 0.91620 0.91118 0.91780 0.89751 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.92 36.01 0.36 -0.33 16 2 C 0.00 -0.04 6.92 -82.21 -0.57 -0.61 16 3 C -0.18 -3.21 10.73 -39.35 -0.42 -3.64 16 4 C 0.03 0.66 7.17 -82.79 -0.59 0.06 16 5 C 0.49 13.22 7.90 34.52 0.27 13.50 16 6 O -0.53 -15.34 16.17 -19.28 -0.31 -15.65 16 7 O -0.23 -6.82 8.58 -21.73 -0.19 -7.01 16 8 C -0.38 -11.77 10.11 30.94 0.31 -11.46 16 9 H 0.11 3.75 7.09 -52.48 -0.37 3.38 16 10 C 0.07 2.02 5.49 -17.52 -0.10 1.92 16 11 N -0.87 -26.57 13.96 55.49 0.77 -25.80 16 12 Si 0.90 22.67 28.62 -169.99 -4.86 17.81 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 16 N -0.24 -4.88 11.65 33.40 0.39 -4.49 16 17 N -0.28 -4.30 3.04 -50.66 -0.15 -4.46 16 18 C 0.15 1.68 2.82 -67.93 -0.19 1.49 16 19 C -0.13 -1.38 5.38 -26.73 -0.14 -1.52 16 20 C -0.11 -0.86 5.92 -26.73 -0.16 -1.02 16 21 C -0.13 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.11 -0.86 5.92 -26.73 -0.16 -1.01 16 23 C -0.13 -1.38 5.37 -26.73 -0.14 -1.52 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.45 7.03 -51.93 -0.37 0.08 16 27 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 28 H 0.28 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.10 0.83 6.55 -51.93 -0.34 0.49 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -35.63 327.65 -6.82 -42.44 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.71 Total: -2.54 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.69 Total: -5.24 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 1.01 Total: -34.75 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.50 Total: -22.66 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.86 Total: 17.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.63 -6.82 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776436687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.399 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds