Wall clock time and date at job start Tue Mar 31 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35336 * 126.38166 * 2 1 4 4 C 1.41568 * 105.50478 * 180.22929 * 3 2 1 5 5 C 1.47531 * 126.52557 * 179.79357 * 4 3 2 6 6 O 1.21523 * 120.00407 * 0.02562 * 5 4 3 7 7 O 1.34759 * 119.99808 * 179.97438 * 5 4 3 8 8 C 1.34859 * 117.00158 * 180.02562 * 7 5 4 9 9 H 1.08003 * 119.99970 * 0.02562 * 8 7 5 10 10 C 1.38796 * 120.00254 * 179.97438 * 8 7 5 11 11 N 1.31425 * 120.00046 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 119.99788 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47566 * 89.99664 * 12 10 8 14 14 H 1.48506 * 109.46944 * 209.99600 * 12 10 8 15 15 H 1.48501 * 109.47320 * 329.99231 * 12 10 8 16 16 N 1.31885 * 106.94516 * 359.77879 * 4 3 2 17 17 N 1.28470 * 110.05562 * 359.97438 * 16 4 3 18 18 C 1.46500 * 124.87238 * 179.97438 * 17 16 4 19 19 C 1.52997 * 109.47473 * 60.02318 * 18 17 16 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09002 * 109.46866 * 270.14975 * 1 2 3 25 25 H 1.09002 * 109.46750 * 30.14083 * 1 2 3 26 26 H 1.08992 * 109.47610 * 150.14729 * 1 2 3 27 27 H 1.08000 * 127.24659 * 0.02562 * 3 2 1 28 28 H 0.96998 * 119.99680 * 180.02562 * 11 10 8 29 29 H 1.08998 * 109.46845 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 31 31 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 32 32 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 34 34 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 35 35 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 38 38 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 39 39 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0896 0.0000 4 6 3.6325 0.5851 -0.0055 5 6 4.8754 1.3799 -0.0118 6 8 4.8204 2.5939 -0.0123 7 8 6.0718 0.7596 -0.0161 8 6 7.1684 1.5446 -0.0213 9 1 7.0631 2.6195 -0.0215 10 6 8.4323 0.9711 -0.0254 11 7 9.5010 1.7361 -0.0299 12 14 8.6144 -0.8879 -0.0243 13 1 8.6575 -1.3820 -1.4240 14 1 9.8720 -1.2617 0.6715 15 1 7.4586 -1.4981 0.6807 16 7 3.5421 -0.7307 -0.0034 17 7 2.3079 -1.0874 0.0032 18 6 1.8371 -2.4747 0.0067 19 6 2.3621 -3.1884 1.2541 20 6 1.8708 -4.6374 1.2573 21 6 2.3844 -5.3529 0.0063 22 6 1.8593 -4.6392 -1.2411 23 6 2.3506 -3.1903 -1.2444 24 1 -0.3633 0.0027 1.0277 25 1 -0.3633 0.8888 -0.5160 26 1 -0.3634 -0.8912 -0.5115 27 1 2.0054 2.1258 0.0004 28 1 10.3843 1.3353 -0.0331 29 1 0.7472 -2.4884 0.0119 30 1 1.9966 -2.6784 2.1454 31 1 3.4520 -3.1747 1.2488 32 1 2.2445 -5.1457 2.1462 33 1 0.7809 -4.6515 1.2624 34 1 3.4742 -5.3388 0.0012 35 1 2.0347 -6.3853 0.0089 36 1 2.2248 -5.1492 -2.1324 37 1 0.7694 -4.6533 -1.2360 38 1 3.4405 -3.1761 -1.2494 39 1 1.9769 -2.6819 -2.1333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776436687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:09 Heat of formation + Delta-G solvation = -43.146644 kcal Electronic energy + Delta-G solvation = -21821.411705 eV Core-core repulsion = 18536.496474 eV Total energy + Delta-G solvation = -3284.915231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.81320 -41.04348 -39.33012 -37.46195 -34.62299 -34.24985 -33.61617 -31.82440 -30.36842 -28.29197 -27.66041 -25.44328 -23.64911 -23.23292 -22.05932 -20.97490 -20.40382 -20.21217 -18.19375 -18.10898 -17.25563 -16.99193 -16.38052 -16.15446 -15.80512 -15.37694 -15.14078 -14.86448 -14.66922 -14.24732 -14.04917 -13.84895 -13.77948 -13.56501 -13.27727 -13.20146 -13.13033 -12.50402 -12.42683 -12.32435 -12.13950 -11.95190 -11.78335 -11.55272 -11.44464 -11.33335 -11.27964 -10.90405 -10.12843 -9.92386 -8.62806 -6.46924 0.38424 1.06101 1.24240 1.31430 1.41239 1.49922 2.16299 2.21589 2.36859 2.87868 3.27735 3.60165 3.66895 3.71907 3.89575 4.11839 4.15664 4.16152 4.20711 4.41927 4.49488 4.54188 4.55149 4.61933 4.80519 4.86182 4.98262 4.99750 5.03446 5.13999 5.16038 5.17785 5.23861 5.30978 5.33086 5.41490 5.50563 5.81162 5.94650 6.35958 6.72174 6.90548 7.52146 8.49917 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.005694 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.476673 B = 4916.076408 C = 6284.463226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.017 4.017 5 C 0.493 3.507 6 O -0.564 6.564 7 O -0.245 6.245 8 C -0.411 4.411 9 H 0.064 0.936 10 C 0.025 3.975 11 N -0.906 5.906 12 Si 0.977 3.023 13 H -0.259 1.259 14 H -0.254 1.254 15 H -0.263 1.263 16 N -0.266 5.266 17 N -0.268 5.268 18 C 0.144 3.856 19 C -0.130 4.130 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.130 4.130 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.166 0.834 28 H 0.292 0.708 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.270 -18.894 0.100 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.228 4.228 4 C -0.173 4.173 5 C 0.340 3.660 6 O -0.458 6.458 7 O -0.152 6.152 8 C -0.486 4.486 9 H 0.082 0.918 10 C -0.176 4.176 11 N -0.546 5.546 12 Si 0.797 3.203 13 H -0.184 1.184 14 H -0.178 1.178 15 H -0.187 1.187 16 N -0.103 5.103 17 N -0.058 5.058 18 C 0.045 3.955 19 C -0.168 4.168 20 C -0.144 4.144 21 C -0.165 4.165 22 C -0.144 4.144 23 C -0.169 4.169 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.184 0.816 28 H 0.102 0.898 29 H 0.169 0.831 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.401 -19.628 0.103 30.543 hybrid contribution 0.855 1.258 -0.012 1.521 sum -22.546 -18.371 0.091 29.083 Atomic orbital electron populations 1.20593 0.82159 1.05801 1.05112 1.22089 0.97519 0.84950 1.05064 1.21667 0.88929 1.01099 1.11150 1.20709 0.92300 0.90332 1.13949 1.20049 0.83386 0.85645 0.76951 1.90635 1.87765 1.15779 1.51627 1.83645 1.13929 1.40137 1.77531 1.20454 0.82717 0.90893 1.54582 0.91847 1.25449 0.92414 1.05775 0.93993 1.69671 0.98927 1.38637 1.47334 0.85180 0.78730 0.76500 0.79931 1.18365 1.17775 1.18733 1.73633 1.03788 1.14081 1.18844 1.46237 1.01714 1.08788 1.49089 1.22177 1.01604 0.73749 0.97944 1.21906 1.00968 0.97929 0.96001 1.21487 1.02379 0.91818 0.98676 1.21640 1.00276 1.00242 0.94326 1.21487 1.02341 0.91840 0.98693 1.21918 1.01079 0.97915 0.95963 0.88318 0.88227 0.88386 0.81644 0.89751 0.83077 0.91169 0.93604 0.90790 0.88771 0.93683 0.89458 0.90760 0.88772 0.93539 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.92 71.24 0.71 -0.22 16 2 C 0.03 0.72 6.92 41.39 0.29 1.01 16 3 C -0.20 -7.10 10.73 22.42 0.24 -6.86 16 4 C -0.02 -0.78 7.17 42.41 0.30 -0.48 16 5 C 0.49 28.35 7.90 70.27 0.56 28.90 16 6 O -0.56 -35.00 16.17 19.76 0.32 -34.68 16 7 O -0.24 -15.19 8.58 11.02 0.09 -15.09 16 8 C -0.41 -27.54 10.11 67.95 0.69 -26.85 16 9 H 0.06 4.72 7.09 -2.91 -0.02 4.70 16 10 C 0.02 1.55 5.49 84.89 0.47 2.01 16 11 N -0.91 -57.06 13.96 21.63 0.30 -56.76 16 12 Si 0.98 47.88 28.62 68.60 1.96 49.84 16 13 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 14 H -0.25 -11.19 7.11 99.48 0.71 -10.48 16 15 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 16 N -0.27 -10.86 11.65 -48.23 -0.56 -11.42 16 17 N -0.27 -7.67 3.04 -314.20 -0.96 -8.63 16 18 C 0.14 2.64 2.82 44.99 0.13 2.77 16 19 C -0.13 -2.46 5.38 30.59 0.16 -2.29 16 20 C -0.11 -1.21 5.92 30.59 0.18 -1.02 16 21 C -0.13 -1.52 5.92 30.59 0.18 -1.34 16 22 C -0.11 -1.19 5.92 30.59 0.18 -1.01 16 23 C -0.13 -2.45 5.37 30.60 0.16 -2.28 16 24 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.61 7.03 -2.39 -0.02 0.59 16 27 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16 28 H 0.29 16.45 8.31 -92.71 -0.77 15.68 16 29 H 0.15 1.43 6.55 -2.39 -0.02 1.41 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -86.39 327.65 6.45 -79.94 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.04 Total: 4.46 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.25 Total: -7.66 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.22 Total: -76.81 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: 0.41 Total: -49.78 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.96 Total: 49.84 kcal Total: -86.39 6.45 -79.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776436687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.796 kcal (2) G-P(sol) polarization free energy of solvation -86.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds