Wall clock time and date at job start Tue Mar 31 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30008 * 127.33321 * 2 1 4 4 O 1.20662 * 112.30343 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15248 * 359.75974 * 4 3 2 6 6 C 1.50698 * 126.83274 * 180.30402 * 5 4 3 7 7 C 1.53006 * 117.49612 * 8.72239 * 6 5 4 8 8 C 1.53007 * 117.49383 * 300.10246 * 6 5 4 9 9 C 1.37366 * 106.34205 * 0.38646 * 5 4 3 10 10 C 1.47396 * 128.56482 * 179.91327 * 9 5 4 11 11 O 1.21600 * 119.99999 * 269.70130 * 10 9 5 12 12 N 1.34774 * 119.99866 * 89.70105 * 10 9 5 13 13 C 1.46506 * 120.00072 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99653 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47123 * 89.99910 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00033 * 20 18 16 23 23 H 1.48501 * 109.47006 * 329.99902 * 20 18 16 24 24 H 1.08997 * 109.46931 * 270.00062 * 1 2 3 25 25 H 1.09000 * 109.46813 * 29.99766 * 1 2 3 26 26 H 1.08995 * 109.46997 * 149.99747 * 1 2 3 27 27 H 1.08992 * 115.55555 * 154.43269 * 6 5 4 28 28 H 1.08998 * 117.49782 * 0.02562 * 7 6 5 29 29 H 1.08992 * 117.49624 * 145.02547 * 7 6 5 30 30 H 1.09000 * 117.49830 * 214.97716 * 8 6 5 31 31 H 1.08996 * 117.50068 * 359.97380 * 8 6 5 32 32 H 0.97001 * 120.00676 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 34 34 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 35 35 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 36 36 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 37 37 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 38 38 H 1.09004 * 109.47298 * 59.99717 * 15 14 13 39 39 H 0.96997 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0061 6 6 4.9711 -1.3246 0.0146 7 6 6.2342 -0.4866 0.2232 8 6 5.9230 -1.0711 -1.1562 9 6 2.3991 -1.1696 0.0006 10 6 2.0401 -2.5992 0.0015 11 8 1.8922 -3.1896 -1.0512 12 7 1.8756 -3.2519 1.1691 13 6 1.5182 -4.6727 1.1701 14 6 1.3931 -5.1661 2.6129 15 6 1.0204 -6.6500 2.6139 16 6 0.8978 -7.1362 4.0350 17 1 1.0682 -6.4549 4.8554 18 6 0.5671 -8.4507 4.2878 19 7 0.4605 -8.8751 5.5280 20 14 0.2717 -9.6290 2.8687 21 1 1.5512 -10.2827 2.4936 22 1 -0.7107 -10.6637 3.2808 23 1 -0.2604 -8.8773 1.7038 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 4.9555 -2.3269 0.4425 28 1 6.1091 0.5882 0.3546 29 1 7.0497 -0.9376 0.7885 30 1 6.5338 -1.9065 -1.4983 31 1 5.5930 -0.3811 -1.9328 32 1 1.9939 -2.7811 2.0089 33 1 0.5665 -4.8082 0.6563 34 1 2.2927 -5.2425 0.6566 35 1 2.3446 -5.0305 3.1270 36 1 0.6184 -4.5962 3.1259 37 1 0.0690 -6.7860 2.0996 38 1 1.7954 -7.2196 2.1009 39 1 0.2282 -9.7999 5.7059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783957545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:56 Heat of formation + Delta-G solvation = 31.573325 kcal Electronic energy + Delta-G solvation = -20862.253414 eV Core-core repulsion = 17580.578283 eV Total energy + Delta-G solvation = -3281.675130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.09762 -39.54290 -37.75491 -35.63035 -34.77339 -33.36663 -32.08404 -31.32309 -29.04044 -27.50073 -24.93878 -23.87104 -22.85828 -22.60303 -20.93946 -20.33384 -19.64129 -18.10115 -17.86819 -16.90638 -16.66079 -16.18223 -15.77996 -15.29213 -14.63149 -14.22304 -14.00725 -13.64471 -13.61190 -13.48329 -13.19114 -12.75295 -12.40811 -12.08857 -11.99294 -11.98592 -11.73184 -11.46097 -11.15231 -10.94033 -10.84941 -10.49255 -10.11982 -10.05644 -9.86694 -9.71369 -9.42254 -9.27001 -9.01547 -8.58979 -6.09607 -4.08686 1.01081 1.68711 2.34030 2.53059 3.24476 3.28508 3.36426 3.36771 3.40031 3.83016 3.94003 4.30915 4.41176 4.45399 4.47514 4.72552 4.97675 5.11858 5.22750 5.23157 5.24350 5.29753 5.36067 5.47870 5.50340 5.56796 5.59344 5.67458 5.79320 5.93014 6.21543 6.36846 6.58975 6.71705 7.17394 7.30857 7.46203 7.72187 7.98196 8.11917 8.46536 8.94089 9.52413 11.03609 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.003362 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.278424 B = 8327.207705 C = 8823.309478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.050 3.950 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.242 4.242 10 C 0.595 3.405 11 O -0.527 6.527 12 N -0.713 5.713 13 C 0.113 3.887 14 C -0.114 4.114 15 C -0.011 4.011 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.402 0.598 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 18.734 -11.515 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.014 4.014 6 C -0.114 4.114 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.249 4.249 10 C 0.378 3.622 11 O -0.404 6.404 12 N -0.363 5.363 13 C -0.009 4.009 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.158 0.842 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.658 19.438 -12.163 24.174 hybrid contribution -0.290 -1.328 -0.152 1.368 sum 7.368 18.110 -12.315 23.107 Atomic orbital electron populations 1.20256 0.84991 1.04385 1.04033 1.24755 0.98632 0.86429 1.00737 1.73618 0.89013 1.23228 1.20437 1.84494 1.21569 1.22347 1.68176 1.23521 0.95519 0.83456 0.98866 1.20533 0.83984 0.99584 1.07308 1.23113 0.96835 1.00253 0.99587 1.23125 1.00522 1.03906 0.91729 1.21903 0.92458 0.95547 1.15014 1.16867 0.77270 0.83719 0.84333 1.90825 1.50363 1.67812 1.31378 1.46161 1.69812 1.12452 1.07883 1.21753 1.00771 0.78447 0.99956 1.21717 1.01735 0.99499 0.92199 1.19503 0.96378 0.90714 0.98271 1.21085 1.47756 0.96115 0.91160 0.91006 1.25029 0.94665 0.98247 0.95504 1.69908 1.48733 1.16691 1.18782 0.86779 0.78431 0.80903 0.83208 1.20223 1.21342 1.18891 0.89382 0.89897 0.89576 0.84176 0.87610 0.87211 0.87141 0.88023 0.76342 0.91428 0.91445 0.92021 0.91976 0.96264 0.96708 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.49 36.01 0.38 -0.36 16 2 C 0.06 0.69 7.59 -79.77 -0.61 0.08 16 3 N -0.36 -4.50 12.01 34.78 0.42 -4.09 16 4 O 0.10 1.12 10.86 18.65 0.20 1.32 16 5 C 0.05 0.56 7.00 -34.63 -0.24 0.32 16 6 C -0.10 -0.84 6.15 -91.77 -0.56 -1.40 16 7 C -0.16 -1.04 10.18 -26.72 -0.27 -1.31 16 8 C -0.16 -1.11 10.23 -26.72 -0.27 -1.38 16 9 C -0.24 -3.09 6.24 -102.89 -0.64 -3.74 16 10 C 0.59 8.66 7.63 -12.53 -0.10 8.56 16 11 O -0.53 -9.60 17.11 5.28 0.09 -9.51 16 12 N -0.71 -9.50 5.55 -61.39 -0.34 -9.84 16 13 C 0.11 1.76 5.67 -4.04 -0.02 1.74 16 14 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 16 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 17 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 20 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.11 0.66 8.02 -51.93 -0.42 0.24 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 4.50 8.46 -40.82 -0.35 4.15 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 38 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -32.94 340.45 -7.18 -40.12 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.76 Total: -0.24 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.02 Total: -12.97 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.85 Total: -40.54 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.29 Total: -8.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.94 -7.18 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783957545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.695 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds