Wall clock time and date at job start Tue Mar 31 2020 01:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30008 * 127.33321 * 2 1 4 4 O 1.20662 * 112.30343 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15248 * 359.75974 * 4 3 2 6 6 C 1.50698 * 126.83274 * 180.30402 * 5 4 3 7 7 C 1.53006 * 117.49612 * 8.72239 * 6 5 4 8 8 C 1.53007 * 117.49383 * 300.10246 * 6 5 4 9 9 C 1.37366 * 106.34205 * 0.38646 * 5 4 3 10 10 C 1.47396 * 128.56482 * 179.91327 * 9 5 4 11 11 O 1.21600 * 119.99999 * 269.70130 * 10 9 5 12 12 N 1.34774 * 119.99866 * 89.70105 * 10 9 5 13 13 C 1.46506 * 120.00072 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99653 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47123 * 89.99910 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00033 * 20 18 16 23 23 H 1.48501 * 109.47006 * 329.99902 * 20 18 16 24 24 H 1.08997 * 109.46931 * 270.00062 * 1 2 3 25 25 H 1.09000 * 109.46813 * 29.99766 * 1 2 3 26 26 H 1.08995 * 109.46997 * 149.99747 * 1 2 3 27 27 H 1.08992 * 115.55555 * 154.43269 * 6 5 4 28 28 H 1.08998 * 117.49782 * 0.02562 * 7 6 5 29 29 H 1.08992 * 117.49624 * 145.02547 * 7 6 5 30 30 H 1.09000 * 117.49830 * 214.97716 * 8 6 5 31 31 H 1.08996 * 117.50068 * 359.97380 * 8 6 5 32 32 H 0.97001 * 120.00676 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 34 34 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 35 35 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 36 36 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 37 37 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 38 38 H 1.09004 * 109.47298 * 59.99717 * 15 14 13 39 39 H 0.96997 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0061 6 6 4.9711 -1.3246 0.0146 7 6 6.2342 -0.4866 0.2232 8 6 5.9230 -1.0711 -1.1562 9 6 2.3991 -1.1696 0.0006 10 6 2.0401 -2.5992 0.0015 11 8 1.8922 -3.1896 -1.0512 12 7 1.8756 -3.2519 1.1691 13 6 1.5182 -4.6727 1.1701 14 6 1.3931 -5.1661 2.6129 15 6 1.0204 -6.6500 2.6139 16 6 0.8978 -7.1362 4.0350 17 1 1.0682 -6.4549 4.8554 18 6 0.5671 -8.4507 4.2878 19 7 0.4605 -8.8751 5.5280 20 14 0.2717 -9.6290 2.8687 21 1 1.5512 -10.2827 2.4936 22 1 -0.7107 -10.6637 3.2808 23 1 -0.2604 -8.8773 1.7038 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 4.9555 -2.3269 0.4425 28 1 6.1091 0.5882 0.3546 29 1 7.0497 -0.9376 0.7885 30 1 6.5338 -1.9065 -1.4983 31 1 5.5930 -0.3811 -1.9328 32 1 1.9939 -2.7811 2.0089 33 1 0.5665 -4.8082 0.6563 34 1 2.2927 -5.2425 0.6566 35 1 2.3446 -5.0305 3.1270 36 1 0.6184 -4.5962 3.1259 37 1 0.0690 -6.7860 2.0996 38 1 1.7954 -7.2196 2.1009 39 1 0.2282 -9.7999 5.7059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783957545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:55 Heat of formation + Delta-G solvation = 10.690187 kcal Electronic energy + Delta-G solvation = -20863.158975 eV Core-core repulsion = 17580.578283 eV Total energy + Delta-G solvation = -3282.580691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -46.00919 -40.73540 -38.37588 -37.05151 -35.69228 -35.15229 -33.43645 -32.67432 -29.87271 -29.11939 -26.16627 -24.66675 -24.15129 -23.32026 -22.28851 -21.66530 -20.55687 -19.18428 -18.92423 -18.69649 -17.60181 -17.17406 -16.96930 -16.47088 -16.20672 -15.42437 -15.30724 -14.77887 -14.69341 -14.37858 -14.32997 -13.99844 -13.81403 -13.61874 -13.09381 -12.75115 -12.70327 -12.58111 -12.44939 -12.20668 -11.99794 -11.79888 -11.59611 -11.45989 -11.34643 -11.27507 -11.01627 -10.75006 -10.27151 -10.22648 -8.28209 -6.32231 0.13147 0.76533 1.22346 1.38422 1.40333 1.51729 1.62272 2.17707 2.37593 2.75918 3.02465 3.07858 3.10610 3.56974 3.67676 3.83791 3.94410 4.08534 4.12631 4.20408 4.38911 4.48180 4.49894 4.54802 4.65487 4.73872 4.86908 4.88404 4.90407 5.02666 5.04049 5.04809 5.18731 5.27378 5.48497 5.56620 5.66131 6.28389 6.36412 6.76243 7.00119 7.08479 7.32732 8.88264 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.003362 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.278424 B = 8327.207705 C = 8823.309478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.372 5.372 4 O 0.094 5.906 5 C 0.066 3.934 6 C -0.120 4.120 7 C -0.142 4.142 8 C -0.152 4.152 9 C -0.269 4.269 10 C 0.605 3.395 11 O -0.566 6.566 12 N -0.700 5.700 13 C 0.126 3.874 14 C -0.101 4.101 15 C -0.012 4.012 16 C -0.531 4.531 17 H 0.036 0.964 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.246 1.246 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.414 0.586 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 19.294 -12.948 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.081 5.081 4 O 0.035 5.965 5 C 0.002 3.998 6 C -0.139 4.139 7 C -0.179 4.179 8 C -0.190 4.190 9 C -0.277 4.277 10 C 0.390 3.610 11 O -0.446 6.446 12 N -0.351 5.351 13 C 0.003 3.997 14 C -0.139 4.139 15 C -0.050 4.050 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.169 1.169 24 H 0.121 0.879 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.420 20.036 -13.580 25.627 hybrid contribution -0.470 -1.432 0.373 1.552 sum 7.950 18.604 -13.207 24.161 Atomic orbital electron populations 1.20377 0.83393 1.04820 1.05141 1.25164 0.99733 0.85978 0.99825 1.73607 0.89333 1.23598 1.21566 1.84477 1.21365 1.22508 1.68198 1.23938 0.96111 0.83185 0.96542 1.20714 0.83769 0.99953 1.09502 1.23232 0.95522 1.00191 0.98947 1.23240 0.99605 1.04359 0.91748 1.21759 0.93489 0.94732 1.17699 1.16946 0.76215 0.84175 0.83705 1.90802 1.52216 1.68841 1.32707 1.45963 1.69142 1.11621 1.08375 1.21445 1.00697 0.79557 0.98033 1.21488 1.01950 0.96605 0.93832 1.19466 0.96800 0.93753 0.94970 1.21469 1.46781 0.95730 0.92881 0.94517 1.25993 0.94612 1.00419 0.98237 1.70060 1.50513 1.17340 1.21299 0.85699 0.78703 0.78454 0.80063 1.19183 1.21237 1.16931 0.87865 0.88600 0.89957 0.84125 0.87335 0.85302 0.85759 0.88327 0.74925 0.91766 0.91507 0.91585 0.91749 0.95955 0.95962 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.49 71.24 0.75 -0.65 16 2 C 0.06 1.29 7.59 45.16 0.34 1.63 16 3 N -0.37 -9.07 12.01 -44.78 -0.54 -9.60 16 4 O 0.09 2.10 10.86 76.97 0.84 2.93 16 5 C 0.07 1.41 7.00 25.48 0.18 1.58 16 6 C -0.12 -1.92 6.15 -11.54 -0.07 -2.00 16 7 C -0.14 -1.49 10.18 30.60 0.31 -1.17 16 8 C -0.15 -1.87 10.23 30.60 0.31 -1.56 16 9 C -0.27 -6.65 6.24 -18.74 -0.12 -6.77 16 10 C 0.60 17.03 7.63 86.65 0.66 17.69 16 11 O -0.57 -20.28 17.11 -4.03 -0.07 -20.35 16 12 N -0.70 -17.64 5.55 -466.40 -2.59 -20.23 16 13 C 0.13 3.71 5.67 86.38 0.49 4.20 16 14 C -0.10 -3.44 5.27 30.59 0.16 -3.28 16 15 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 16 C -0.53 -29.47 9.66 25.60 0.25 -29.22 16 17 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 18 C 0.00 0.24 5.47 84.66 0.46 0.70 16 19 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 20 Si 0.95 43.42 27.47 68.60 1.88 45.31 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.11 1.10 8.02 -2.39 -0.02 1.08 16 29 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.41 8.58 8.46 -92.71 -0.78 7.79 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 38 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.08 340.45 3.89 -67.19 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.22 Total: 12.50 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 3.85 Total: -19.25 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -2.83 Total: -88.33 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.77 Total: -17.42 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.31 kcal Total: -71.08 3.89 -67.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783957545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.876 kcal (2) G-P(sol) polarization free energy of solvation -71.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds