Wall clock time and date at job start Mon Mar 30 2020 23:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00309 * 2 1 4 4 C 1.38235 * 120.00326 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46811 * 340.00330 * 6 5 4 8 8 O 1.42903 * 109.47178 * 220.00200 * 6 5 4 9 9 C 1.52997 * 109.46856 * 100.00429 * 6 5 4 10 10 N 1.46504 * 109.47189 * 185.00552 * 9 6 5 11 11 C 1.34771 * 120.00122 * 180.02562 * 10 9 6 12 12 O 1.21588 * 120.00018 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99818 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99853 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46947 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00000 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47469 * 89.99596 * 19 17 15 21 21 H 1.48501 * 109.47557 * 209.99815 * 19 17 15 22 22 H 1.48502 * 109.46877 * 329.99784 * 19 17 15 23 23 C 1.38240 * 120.00061 * 0.07178 * 5 4 3 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 5 4 25 25 H 1.08996 * 109.47441 * 89.99986 * 1 2 3 26 26 H 1.09003 * 109.47255 * 210.00399 * 1 2 3 27 27 H 1.09001 * 109.46747 * 329.99788 * 1 2 3 28 28 H 1.08000 * 120.00376 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00616 * 179.72578 * 4 3 2 30 30 H 0.96697 * 114.00023 * 300.00041 * 8 6 5 31 31 H 1.09003 * 109.47187 * 304.99908 * 9 6 5 32 32 H 1.09000 * 109.47619 * 65.00052 * 9 6 5 33 33 H 0.96999 * 119.99805 * 359.97438 * 10 9 6 34 34 H 0.97001 * 120.00095 * 0.02562 * 13 11 10 35 35 H 1.09000 * 109.46804 * 300.00127 * 14 13 11 36 36 H 1.08999 * 109.47098 * 60.00215 * 14 13 11 37 37 H 0.96997 * 120.00257 * 180.02562 * 18 17 15 38 38 H 1.08005 * 120.00107 * 179.97438 * 23 5 4 39 39 H 1.07999 * 120.00147 * 180.10835 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0016 7 1 6.1421 0.9652 -0.3507 8 8 6.2550 -1.0331 -0.8635 9 6 6.2886 -0.2495 1.4224 10 7 7.7487 -0.1313 1.4450 11 6 8.4217 -0.3124 2.5986 12 8 7.8170 -0.5736 3.6206 13 7 9.7649 -0.2041 2.6192 14 6 10.4964 -0.4005 3.8733 15 6 11.9727 -0.2254 3.6264 16 1 12.3303 0.0084 2.6344 17 6 12.8669 -0.3646 4.6665 18 7 12.4315 -0.6498 5.8743 19 14 14.6969 -0.1483 4.3604 20 1 15.0674 1.2758 4.5606 21 1 15.4614 -0.9967 5.3096 22 1 15.0168 -0.5519 2.9676 23 6 3.5804 -1.1973 0.0006 24 6 2.1981 -1.1973 0.0010 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6583 2.1324 -0.0004 29 1 4.1206 2.1323 -0.0039 30 1 5.9696 -1.9214 -0.6097 31 1 5.8540 0.4865 2.0988 32 1 6.0002 -1.2511 1.7415 33 1 8.2311 0.0767 0.6296 34 1 10.2473 0.0046 1.8039 35 1 10.1618 0.3322 4.6076 36 1 10.3075 -1.4055 4.2506 37 1 13.0605 -0.7474 6.6062 38 1 4.1204 -2.1326 0.0011 39 1 1.6581 -2.1325 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:27 Heat of formation + Delta-G solvation = -70.068372 kcal Electronic energy + Delta-G solvation = -20411.238167 eV Core-core repulsion = 17125.155522 eV Total energy + Delta-G solvation = -3286.082645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14683 -39.08515 -37.41341 -34.30704 -33.77225 -33.17023 -32.23157 -31.20965 -29.43975 -27.32940 -26.00246 -23.41155 -22.90710 -22.17811 -20.99650 -20.09995 -18.09898 -17.75461 -16.32372 -16.23260 -15.69141 -15.35428 -15.07363 -15.04647 -14.55413 -14.21510 -14.17794 -13.82052 -13.67891 -13.46141 -12.97381 -12.69197 -12.47838 -12.42289 -11.95297 -11.92516 -11.63783 -11.39402 -11.17035 -10.93777 -10.85835 -10.39941 -10.27394 -9.40018 -9.33914 -9.20216 -8.81749 -8.76240 -8.65139 -7.72237 -6.12633 -4.19027 0.98678 1.12847 3.25796 3.26922 3.33206 3.36108 3.51081 3.97577 4.20824 4.33743 4.41967 4.48129 4.62307 4.69707 4.77110 4.88562 5.11735 5.16252 5.22255 5.23355 5.25154 5.39324 5.45738 5.69886 5.77324 5.78729 5.85175 6.10395 6.29263 6.30066 6.70037 6.85423 7.15567 7.33408 7.55272 7.58780 7.60373 7.94419 8.07914 8.79899 8.98218 9.36650 9.51387 10.97658 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.002576 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.905636 B =10864.976367 C =11063.147934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.102 4.102 5 C -0.118 4.118 6 C 0.139 3.861 7 H 0.113 0.887 8 O -0.551 6.551 9 C 0.117 3.883 10 N -0.753 5.753 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.729 5.729 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.063 0.937 17 C 0.062 3.938 18 N -0.886 5.886 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.104 4.104 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.376 0.624 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.387 0.613 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.122 0.878 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.137 1.671 -15.517 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.119 4.119 6 C 0.079 3.921 7 H 0.131 0.869 8 O -0.357 6.357 9 C -0.008 4.008 10 N -0.411 5.411 11 C 0.392 3.608 12 O -0.482 6.482 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.579 4.579 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.122 4.122 24 C -0.136 4.136 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.224 0.776 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.229 0.771 34 H 0.219 0.781 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.323 1.882 -14.618 25.921 hybrid contribution 1.149 -0.139 -0.442 1.239 sum -20.174 1.743 -15.060 25.236 Atomic orbital electron populations 1.20804 0.91178 1.02899 1.02313 1.19972 0.96160 0.93263 0.99284 1.21027 0.94069 0.97639 1.00993 1.21008 0.94278 0.97486 0.99219 1.20365 0.95862 0.93974 1.01676 1.21058 0.88509 0.92867 0.89654 0.86891 1.86619 1.76599 1.18316 1.54169 1.21704 0.80824 1.02566 0.95750 1.45023 1.06425 1.79029 1.10669 1.16150 0.82712 0.78732 0.83203 1.90871 1.68254 1.56634 1.32480 1.45711 1.03790 1.74072 1.14543 1.18977 0.89599 0.97163 0.79695 1.21236 0.90870 1.50161 0.95675 0.91926 1.24952 0.99489 0.94816 0.94852 1.69982 1.35066 1.47071 1.00224 0.86404 0.84178 0.78113 0.78124 1.20497 1.21036 1.19775 1.20885 0.94357 0.97442 0.99524 1.21000 0.93987 0.97656 1.00941 0.91164 0.91473 0.91483 0.85914 0.85673 0.77552 0.90972 0.91608 0.77120 0.78109 0.95779 0.95767 0.92490 0.86010 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.09 -0.72 5.88 -104.63 -0.62 -1.34 16 3 C -0.12 -1.01 9.70 -39.59 -0.38 -1.40 16 4 C -0.10 -0.93 9.67 -39.58 -0.38 -1.31 16 5 C -0.12 -1.14 4.97 -104.62 -0.52 -1.66 16 6 C 0.14 1.38 3.24 -27.88 -0.09 1.29 16 7 H 0.11 1.05 8.00 -51.93 -0.42 0.64 16 8 O -0.55 -5.61 13.13 -35.23 -0.46 -6.07 16 9 C 0.12 1.53 5.29 -4.04 -0.02 1.51 16 10 N -0.75 -11.58 5.51 -65.22 -0.36 -11.94 16 11 C 0.69 14.72 8.57 -86.92 -0.74 13.98 16 12 O -0.60 -15.49 16.34 5.29 0.09 -15.40 16 13 N -0.73 -16.07 5.55 -66.41 -0.37 -16.44 16 14 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 15 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.10 -0.93 9.32 -39.58 -0.37 -1.30 16 24 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.13 0.95 8.04 -52.49 -0.42 0.52 16 30 H 0.38 2.86 7.50 45.56 0.34 3.20 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 5.09 8.49 -40.82 -0.35 4.75 16 34 H 0.39 7.31 8.34 -40.82 -0.34 6.97 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.12 0.87 6.79 -52.48 -0.36 0.52 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -34.77 337.25 -8.77 -43.54 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.87 Total: 9.14 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.60 Total: 1.72 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.01 Total: -54.12 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.38 Total: -21.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.77 -8.77 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.525 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds