Wall clock time and date at job start Mon Mar 30 2020 23:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00309 * 2 1 4 4 C 1.38235 * 120.00326 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46811 * 340.00330 * 6 5 4 8 8 O 1.42903 * 109.47178 * 220.00200 * 6 5 4 9 9 C 1.52997 * 109.46856 * 100.00429 * 6 5 4 10 10 N 1.46504 * 109.47189 * 185.00552 * 9 6 5 11 11 C 1.34771 * 120.00122 * 180.02562 * 10 9 6 12 12 O 1.21588 * 120.00018 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99818 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99853 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46947 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00000 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47469 * 89.99596 * 19 17 15 21 21 H 1.48501 * 109.47557 * 209.99815 * 19 17 15 22 22 H 1.48502 * 109.46877 * 329.99784 * 19 17 15 23 23 C 1.38240 * 120.00061 * 0.07178 * 5 4 3 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 5 4 25 25 H 1.08996 * 109.47441 * 89.99986 * 1 2 3 26 26 H 1.09003 * 109.47255 * 210.00399 * 1 2 3 27 27 H 1.09001 * 109.46747 * 329.99788 * 1 2 3 28 28 H 1.08000 * 120.00376 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00616 * 179.72578 * 4 3 2 30 30 H 0.96697 * 114.00023 * 300.00041 * 8 6 5 31 31 H 1.09003 * 109.47187 * 304.99908 * 9 6 5 32 32 H 1.09000 * 109.47619 * 65.00052 * 9 6 5 33 33 H 0.96999 * 119.99805 * 359.97438 * 10 9 6 34 34 H 0.97001 * 120.00095 * 0.02562 * 13 11 10 35 35 H 1.09000 * 109.46804 * 300.00127 * 14 13 11 36 36 H 1.08999 * 109.47098 * 60.00215 * 14 13 11 37 37 H 0.96997 * 120.00257 * 180.02562 * 18 17 15 38 38 H 1.08005 * 120.00107 * 179.97438 * 23 5 4 39 39 H 1.07999 * 120.00147 * 180.10835 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0016 7 1 6.1421 0.9652 -0.3507 8 8 6.2550 -1.0331 -0.8635 9 6 6.2886 -0.2495 1.4224 10 7 7.7487 -0.1313 1.4450 11 6 8.4217 -0.3124 2.5986 12 8 7.8170 -0.5736 3.6206 13 7 9.7649 -0.2041 2.6192 14 6 10.4964 -0.4005 3.8733 15 6 11.9727 -0.2254 3.6264 16 1 12.3303 0.0084 2.6344 17 6 12.8669 -0.3646 4.6665 18 7 12.4315 -0.6498 5.8743 19 14 14.6969 -0.1483 4.3604 20 1 15.0674 1.2758 4.5606 21 1 15.4614 -0.9967 5.3096 22 1 15.0168 -0.5519 2.9676 23 6 3.5804 -1.1973 0.0006 24 6 2.1981 -1.1973 0.0010 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6583 2.1324 -0.0004 29 1 4.1206 2.1323 -0.0039 30 1 5.9696 -1.9214 -0.6097 31 1 5.8540 0.4865 2.0988 32 1 6.0002 -1.2511 1.7415 33 1 8.2311 0.0767 0.6296 34 1 10.2473 0.0046 1.8039 35 1 10.1618 0.3322 4.6076 36 1 10.3075 -1.4055 4.2506 37 1 13.0605 -0.7474 6.6062 38 1 4.1204 -2.1326 0.0011 39 1 1.6581 -2.1325 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:26 Heat of formation + Delta-G solvation = -96.791422 kcal Electronic energy + Delta-G solvation = -20412.396966 eV Core-core repulsion = 17125.155522 eV Total energy + Delta-G solvation = -3287.241444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12207 -40.47406 -38.30425 -36.18860 -35.29040 -34.30521 -33.81182 -31.83911 -30.51649 -29.02487 -27.07412 -24.76281 -23.93263 -23.38673 -21.98404 -21.54844 -19.82564 -18.60970 -18.06878 -17.31059 -17.12007 -16.44892 -16.37522 -16.19724 -15.94563 -15.33872 -15.13040 -14.92899 -14.63883 -14.36279 -14.27653 -14.18128 -14.01201 -13.38928 -13.11529 -12.96867 -12.88985 -12.70080 -12.55838 -12.21757 -12.09601 -11.82186 -11.47068 -11.39536 -11.11023 -10.79979 -10.30945 -9.84566 -9.59672 -9.47323 -8.27744 -6.44211 0.31853 0.48414 1.44061 1.47016 1.58014 1.86442 2.23139 2.40165 2.76815 3.07063 3.40542 3.48075 3.71952 3.84556 3.88849 4.09100 4.10266 4.15126 4.45637 4.55455 4.65362 4.78077 4.83529 4.89215 4.93597 5.08575 5.17596 5.25998 5.27357 5.44403 5.48794 5.50909 5.60767 5.67567 5.69229 5.85603 6.08581 6.25455 6.64438 6.67571 7.24834 7.30936 7.71387 8.84654 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.002576 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.905636 B =10864.976367 C =11063.147934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.157 3.843 7 H 0.124 0.876 8 O -0.558 6.558 9 C 0.117 3.883 10 N -0.727 5.727 11 C 0.690 3.310 12 O -0.651 6.651 13 N -0.723 5.723 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.084 0.916 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.256 1.256 23 C -0.115 4.115 24 C -0.130 4.130 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.387 0.613 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.412 0.588 34 H 0.405 0.595 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.269 0.731 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.930 2.153 -17.700 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.131 4.131 5 C -0.135 4.135 6 C 0.098 3.902 7 H 0.142 0.858 8 O -0.366 6.366 9 C -0.008 4.008 10 N -0.385 5.385 11 C 0.390 3.610 12 O -0.534 6.534 13 N -0.377 5.377 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.133 4.133 24 C -0.148 4.148 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.237 0.763 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.249 0.751 34 H 0.240 0.760 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.078 0.922 38 H 0.153 0.847 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.146 2.374 -16.897 27.171 hybrid contribution 0.938 -0.309 0.223 1.013 sum -20.207 2.065 -16.674 26.280 Atomic orbital electron populations 1.20849 0.89536 1.03594 1.03118 1.20343 0.97558 0.93185 0.98336 1.21313 0.94070 0.98596 1.00858 1.21258 0.94874 0.97869 0.99103 1.20370 0.95438 0.94592 1.03092 1.20852 0.88852 0.93268 0.87261 0.85850 1.86597 1.76791 1.19125 1.54085 1.21890 0.78898 1.01950 0.98091 1.44785 1.07386 1.77002 1.09310 1.16320 0.82343 0.78299 0.84034 1.90839 1.69090 1.58638 1.34803 1.45305 1.04256 1.74477 1.13631 1.18415 0.90685 0.93711 0.81010 1.21603 0.90757 1.50107 0.96789 0.89818 1.26085 1.05310 0.93987 0.94335 1.70145 1.37230 1.48057 1.01517 0.85120 0.76872 0.78284 0.78690 1.19571 1.20928 1.17959 1.21148 0.94925 0.97890 0.99333 1.21289 0.94038 0.98598 1.00871 0.90203 0.90836 0.90781 0.84255 0.84536 0.76300 0.91994 0.92256 0.75145 0.75977 0.99668 0.99664 0.92232 0.84740 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 71.23 0.71 -0.42 16 2 C -0.09 -1.43 5.88 -19.87 -0.12 -1.55 16 3 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 4 C -0.11 -1.93 9.67 22.27 0.22 -1.71 16 5 C -0.13 -2.44 4.97 -19.86 -0.10 -2.54 16 6 C 0.16 2.91 3.24 29.85 0.10 3.01 16 7 H 0.12 2.04 8.00 -2.39 -0.02 2.02 16 8 O -0.56 -10.32 13.13 -148.98 -1.96 -12.28 16 9 C 0.12 2.98 5.29 86.38 0.46 3.44 16 10 N -0.73 -21.72 5.51 -478.53 -2.64 -24.35 16 11 C 0.69 29.67 8.57 179.06 1.53 31.21 16 12 O -0.65 -34.56 16.34 -3.99 -0.07 -34.62 16 13 N -0.72 -32.10 5.55 -482.28 -2.68 -34.78 16 14 C 0.29 16.16 5.43 85.63 0.46 16.62 16 15 C -0.55 -30.72 9.28 25.60 0.24 -30.48 16 16 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 19 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 C -0.12 -1.94 9.32 22.27 0.21 -1.74 16 24 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 27 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 28 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.14 1.88 8.04 -2.91 -0.02 1.86 16 30 H 0.39 5.24 7.50 -74.06 -0.56 4.69 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 9.80 8.49 -92.71 -0.79 9.01 16 34 H 0.40 14.86 8.34 -92.71 -0.77 14.09 16 35 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.13 1.77 6.79 -2.91 -0.02 1.75 16 39 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -76.67 337.25 -1.45 -78.13 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -1.03 Total: 26.91 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 4.60 Total: 12.78 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -5.03 Total: -115.70 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -2.02 Total: -46.90 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.67 -1.45 -78.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.666 kcal (2) G-P(sol) polarization free energy of solvation -76.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds