Wall clock time and date at job start Mon Mar 30 2020 23:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 119.99989 * 2 1 4 4 C 1.38232 * 120.00418 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99793 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00339 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47122 * 25.00274 * 6 5 4 8 8 O 1.42895 * 109.47614 * 145.00199 * 6 5 4 9 9 C 1.53006 * 109.47184 * 265.00388 * 6 5 4 10 10 N 1.46504 * 109.46883 * 179.97438 * 9 6 5 11 11 C 1.34775 * 119.99531 * 179.97438 * 10 9 6 12 12 O 1.21589 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00474 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47456 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00306 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99911 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00219 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46914 * 59.99871 * 19 17 15 21 21 H 1.48507 * 109.47076 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47198 * 299.99776 * 19 17 15 23 23 C 1.38239 * 119.99896 * 0.25503 * 5 4 3 24 24 C 1.38234 * 120.00221 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47178 * 90.00143 * 1 2 3 26 26 H 1.09000 * 109.46691 * 210.00183 * 1 2 3 27 27 H 1.08997 * 109.47065 * 330.00067 * 1 2 3 28 28 H 1.08004 * 119.99740 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.00339 * 179.97438 * 4 3 2 30 30 H 0.96696 * 114.00485 * 59.99641 * 8 6 5 31 31 H 1.09001 * 109.47002 * 299.99404 * 9 6 5 32 32 H 1.08993 * 109.46955 * 59.99842 * 9 6 5 33 33 H 0.96992 * 119.99966 * 359.97438 * 10 9 6 34 34 H 0.96998 * 119.99765 * 0.02562 * 13 11 10 35 35 H 1.08999 * 109.47307 * 300.01227 * 14 13 11 36 36 H 1.09007 * 109.46632 * 60.00564 * 14 13 11 37 37 H 0.96995 * 120.00330 * 180.02562 * 18 17 15 38 38 H 1.07999 * 119.99779 * 179.72575 * 23 5 4 39 39 H 1.08002 * 120.00262 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1424 0.9317 0.4320 8 8 6.2557 -1.1031 0.7711 9 6 6.2876 -0.1262 -1.4391 10 7 7.7526 -0.1256 -1.4402 11 6 8.4256 -0.2282 -2.6034 12 8 7.8168 -0.3207 -3.6519 13 7 9.7733 -0.2271 -2.6046 14 6 10.5049 -0.3392 -3.8689 15 6 11.9867 -0.3142 -3.5959 16 1 12.3475 -0.2243 -2.5819 17 6 12.8819 -0.4061 -4.6404 18 7 12.4426 -0.5161 -5.8752 19 14 14.7187 -0.3744 -4.3020 20 1 15.0791 -1.5131 -3.4194 21 1 15.4602 -0.4882 -5.5836 22 1 15.0770 0.9024 -3.6339 23 6 3.5805 -1.1970 -0.0053 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6581 2.1325 0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.9701 -1.9664 0.4422 31 1 5.9240 -1.0578 -1.8727 32 1 5.9238 0.7154 -2.0285 33 1 8.2382 -0.0513 -0.6039 34 1 10.2590 -0.1529 -1.7683 35 1 10.2418 -1.2765 -4.3591 36 1 10.2404 0.4965 -4.5170 37 1 13.0723 -0.5812 -6.6100 38 1 4.1206 -2.1323 -0.0098 39 1 1.6583 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787351424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:30 Heat of formation + Delta-G solvation = -69.844838 kcal Electronic energy + Delta-G solvation = -20419.130617 eV Core-core repulsion = 17133.057665 eV Total energy + Delta-G solvation = -3286.072952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15117 -39.08446 -37.41830 -34.30016 -33.76016 -33.17339 -32.23040 -31.20500 -29.44950 -27.32821 -26.00655 -23.38184 -22.91280 -22.18239 -20.98788 -20.09741 -18.09905 -17.77097 -16.31926 -16.24185 -15.68682 -15.34241 -15.07882 -15.05210 -14.55750 -14.21860 -14.13962 -13.86323 -13.67536 -13.45233 -12.97086 -12.68984 -12.47188 -12.43190 -11.93196 -11.90420 -11.63756 -11.39490 -11.17774 -10.95338 -10.84379 -10.40889 -10.27262 -9.40040 -9.35211 -9.20077 -8.80568 -8.76132 -8.64694 -7.72080 -6.12314 -4.18847 0.98974 1.13033 3.25600 3.28180 3.32930 3.35213 3.51590 3.97664 4.19710 4.33841 4.42064 4.48926 4.62361 4.69966 4.78303 4.88009 5.11462 5.16496 5.22879 5.23516 5.25739 5.39623 5.45708 5.70244 5.77556 5.78769 5.85242 6.10643 6.29237 6.30240 6.70213 6.85541 7.15894 7.33100 7.55321 7.58807 7.60469 7.94795 8.08230 8.79872 8.98454 9.36796 9.51539 10.97928 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048135 B = 0.002578 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.559953 B =10856.679973 C =11067.739114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.102 4.102 5 C -0.118 4.118 6 C 0.139 3.861 7 H 0.114 0.886 8 O -0.551 6.551 9 C 0.117 3.883 10 N -0.753 5.753 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.729 5.729 14 C 0.267 3.733 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.104 4.104 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.376 0.624 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.396 0.604 34 H 0.387 0.613 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.122 0.878 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.128 1.052 15.481 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.119 4.119 6 C 0.079 3.921 7 H 0.131 0.869 8 O -0.357 6.357 9 C -0.009 4.009 10 N -0.411 5.411 11 C 0.392 3.608 12 O -0.483 6.483 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.524 5.524 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.122 4.122 24 C -0.136 4.136 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.230 0.770 34 H 0.219 0.781 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.319 1.418 14.593 25.874 hybrid contribution 1.153 -0.325 0.446 1.279 sum -20.166 1.093 15.039 25.180 Atomic orbital electron populations 1.20803 0.91181 1.02755 1.02450 1.19971 0.96157 0.93266 0.99313 1.21028 0.94068 0.97635 1.00977 1.20998 0.94282 0.97499 0.99273 1.20369 0.95869 0.93982 1.01654 1.21056 0.88538 0.91446 0.91045 0.86866 1.86612 1.76562 1.16825 1.55712 1.21693 0.80706 1.02970 0.95508 1.45007 1.05897 1.81864 1.08367 1.16151 0.82753 0.78451 0.83449 1.90872 1.68196 1.58564 1.30621 1.45707 1.03296 1.76696 1.12409 1.18970 0.89568 0.97424 0.79435 1.21199 0.90458 1.52645 0.93715 0.91977 1.24950 0.99507 0.94804 0.94820 1.69972 1.35096 1.48552 0.98733 0.86462 0.84138 0.78648 0.77556 1.20094 1.21104 1.20097 1.20873 0.94331 0.97453 0.99548 1.20995 0.93983 0.97651 1.00959 0.91046 0.91540 0.91540 0.85913 0.85660 0.77520 0.91630 0.90970 0.77049 0.78110 0.95789 0.95774 0.92431 0.86009 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.09 -0.72 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.10 -0.93 9.68 -39.59 -0.38 -1.32 16 5 C -0.12 -1.14 5.00 -104.62 -0.52 -1.66 16 6 C 0.14 1.38 3.30 -27.88 -0.09 1.29 16 7 H 0.11 1.05 8.05 -51.93 -0.42 0.63 16 8 O -0.55 -5.57 12.88 -35.23 -0.45 -6.02 16 9 C 0.12 1.53 5.32 -4.04 -0.02 1.50 16 10 N -0.75 -11.56 5.45 -65.22 -0.36 -11.92 16 11 C 0.69 14.71 8.57 -86.92 -0.74 13.97 16 12 O -0.60 -15.49 16.34 5.29 0.09 -15.40 16 13 N -0.73 -16.06 5.55 -66.41 -0.37 -16.43 16 14 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 15 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.10 -0.94 9.33 -39.58 -0.37 -1.30 16 24 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.38 2.87 7.40 45.56 0.34 3.21 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 5.12 8.36 -40.82 -0.34 4.78 16 34 H 0.39 7.32 8.34 -40.82 -0.34 6.97 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 0.87 6.62 -52.49 -0.35 0.53 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -34.67 336.76 -8.77 -43.44 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.87 Total: 9.22 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.60 Total: 1.69 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.01 Total: -54.10 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.37 Total: -21.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.67 -8.77 -43.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787351424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.404 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds