Wall clock time and date at job start Mon Mar 30 2020 23:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47660 * 260.00284 * 7 6 5 9 9 C 1.34778 * 120.00235 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99874 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99564 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99366 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46839 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99867 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99885 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00002 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46923 * 90.00329 * 17 15 13 19 19 H 1.48498 * 109.47006 * 209.99945 * 17 15 13 20 20 H 1.48496 * 109.47091 * 330.00219 * 17 15 13 21 21 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 22 22 C 1.50704 * 119.97128 * 180.02562 * 21 6 5 23 23 C 1.38162 * 120.05734 * 359.76698 * 21 6 5 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.47210 * 20.00581 * 7 6 5 30 30 H 1.09000 * 109.47309 * 139.99621 * 7 6 5 31 31 H 0.97005 * 120.00049 * 0.02562 * 8 7 6 32 32 H 0.96998 * 120.00341 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47330 * 299.99828 * 12 11 9 34 34 H 1.09000 * 109.47650 * 59.99861 * 12 11 9 35 35 H 0.96997 * 119.99737 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.46973 * 90.00063 * 22 21 6 37 37 H 1.08992 * 109.47226 * 210.00189 * 22 21 6 38 38 H 1.09000 * 109.46823 * 330.00052 * 22 21 6 39 39 H 1.07998 * 120.02953 * 180.25220 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.4208 5.3452 -1.3608 9 6 5.0599 6.5067 -1.6034 10 8 5.2760 7.2833 -0.6931 11 7 5.4595 6.8073 -2.8550 12 6 6.1547 8.0697 -3.1186 13 6 6.4896 8.1620 -4.5849 14 1 6.2128 7.3603 -5.2537 15 6 7.1505 9.2694 -5.0727 16 7 7.4433 9.3497 -6.3525 17 14 7.6300 10.6556 -3.9161 18 1 8.9856 10.3963 -3.3679 19 1 7.6343 11.9413 -4.6592 20 1 6.6516 10.7312 -2.8016 21 6 4.0559 2.5172 -0.0011 22 6 5.5607 2.5983 -0.0011 23 6 3.4311 1.2849 0.0038 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2127 2.3204 0.0014 28 1 1.3339 4.5114 0.0008 29 1 3.2907 5.7807 0.3515 30 1 4.8526 4.9848 0.6597 31 1 4.2481 4.7258 -2.0871 32 1 5.2868 6.1880 -3.5812 33 1 5.5110 8.9040 -2.8401 34 1 7.0730 8.1080 -2.5326 35 1 7.9079 10.1290 -6.6957 36 1 5.9236 2.6173 1.0266 37 1 5.9714 1.7294 -0.5153 38 1 5.8756 3.5067 -0.5145 39 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787352356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:47 Heat of formation + Delta-G solvation = -49.395359 kcal Electronic energy + Delta-G solvation = -20678.324461 eV Core-core repulsion = 17393.138265 eV Total energy + Delta-G solvation = -3285.186196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57655 -39.32898 -38.12653 -34.67669 -34.01508 -32.74918 -32.32270 -30.96685 -28.54719 -27.58313 -26.82595 -25.20906 -22.46633 -21.98742 -20.81464 -20.25976 -18.27522 -18.01204 -16.79081 -16.43794 -16.11920 -15.98424 -15.16045 -15.01961 -14.42672 -14.40758 -14.10066 -13.85848 -13.52662 -13.44751 -13.09332 -12.86722 -12.46997 -12.37365 -12.27051 -12.19078 -11.92447 -11.45375 -11.17274 -11.04487 -10.94819 -10.72975 -9.93769 -9.60541 -9.42642 -9.02590 -8.82925 -8.71627 -8.38129 -7.96773 -6.17987 -4.19611 1.05256 1.11724 2.93726 3.21267 3.30368 3.37111 3.46116 3.69093 3.84961 4.37113 4.49467 4.54965 4.66234 4.74180 4.78366 4.96503 5.04962 5.08377 5.12373 5.16257 5.17774 5.49026 5.51168 5.59878 5.73048 5.83471 5.91460 6.07529 6.15008 6.44323 6.51606 6.77806 6.80173 7.08867 7.15469 7.28767 7.44974 7.62384 8.31904 8.73114 8.85502 9.25148 9.44005 10.94038 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035124 B = 0.002940 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.986147 B = 9521.683392 C = 9649.591413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.134 3.866 4 C -0.217 4.217 5 C -0.055 4.055 6 C -0.142 4.142 7 C 0.187 3.813 8 N -0.751 5.751 9 C 0.694 3.306 10 O -0.604 6.604 11 N -0.723 5.723 12 C 0.238 3.762 13 C -0.541 4.541 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.260 1.260 21 C -0.024 4.024 22 C -0.125 4.125 23 C -0.157 4.157 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.392 0.608 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 -18.771 13.371 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.088 3.912 4 C -0.236 4.236 5 C -0.074 4.074 6 C -0.142 4.142 7 C 0.063 3.937 8 N -0.409 5.409 9 C 0.394 3.606 10 O -0.484 6.484 11 N -0.375 5.375 12 C 0.116 3.884 13 C -0.579 4.579 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.531 5.531 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.025 4.025 22 C -0.181 4.181 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.529 -18.071 14.057 26.098 hybrid contribution -0.259 0.245 -0.266 0.445 sum -12.788 -17.825 13.791 25.913 Atomic orbital electron populations 1.23059 0.78333 1.03920 1.01470 1.86068 1.21448 1.27057 1.88645 1.19043 0.92311 0.84101 0.95720 1.21193 1.00010 0.92241 1.10140 1.20900 0.93751 0.97233 0.95495 1.19753 0.93503 0.94578 1.06399 1.19820 0.98359 0.91594 0.83972 1.45210 1.64234 1.21337 1.10078 1.16128 0.78819 0.81484 0.84152 1.90862 1.62933 1.50397 1.44217 1.45397 1.61404 1.24062 1.06657 1.19349 0.91579 0.80738 0.96764 1.21105 1.39026 1.06503 0.91302 0.90319 1.24790 0.94757 0.98004 0.95130 1.69887 1.40413 1.30006 1.12842 0.86806 0.79932 0.81514 0.81379 1.19864 1.20981 1.18416 1.19638 0.96276 0.91426 0.95125 1.20949 0.90348 1.03848 1.02983 1.20276 0.91245 0.98132 1.07864 0.92612 0.92536 0.88268 0.85445 0.85386 0.91320 0.90991 0.77288 0.77469 0.95948 0.96376 0.92309 0.90594 0.91178 0.90144 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.04 10.50 -19.44 -0.20 -3.24 16 3 C 0.13 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.22 -2.02 9.04 -39.43 -0.36 -2.38 16 5 C -0.06 -0.55 9.66 -39.61 -0.38 -0.93 16 6 C -0.14 -1.54 5.25 -104.60 -0.55 -2.09 16 7 C 0.19 2.40 4.92 -5.20 -0.03 2.37 16 8 N -0.75 -10.94 4.89 -66.42 -0.32 -11.26 16 9 C 0.69 13.76 8.57 -86.91 -0.74 13.02 16 10 O -0.60 -14.37 16.34 5.29 0.09 -14.28 16 11 N -0.72 -15.06 5.55 -66.41 -0.37 -15.43 16 12 C 0.24 5.99 4.50 -5.19 -0.02 5.97 16 13 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 14 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 15 C 0.08 2.19 5.47 -17.81 -0.10 2.09 16 16 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 17 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 21 C -0.02 -0.25 5.88 -104.64 -0.62 -0.86 16 22 C -0.12 -1.18 9.26 36.01 0.33 -0.85 16 23 C -0.16 -1.60 9.64 -39.43 -0.38 -1.98 16 24 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 25 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 28 H 0.13 1.11 8.03 -52.48 -0.42 0.69 16 29 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 30 H 0.07 0.96 7.28 -51.93 -0.38 0.58 16 31 H 0.39 4.89 8.48 -40.82 -0.35 4.54 16 32 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 33 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 34 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.08 0.88 6.33 -51.93 -0.33 0.55 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -33.68 329.40 -7.58 -41.26 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.39 Total: 5.71 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.45 Total: 1.24 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.08 Total: -52.66 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.12 Total: -17.53 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.68 -7.58 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.136 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds