Wall clock time and date at job start Mon Mar 30 2020 23:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47660 * 260.00284 * 7 6 5 9 9 C 1.34778 * 120.00235 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99874 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99564 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99366 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46839 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99867 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99885 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00002 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46923 * 90.00329 * 17 15 13 19 19 H 1.48498 * 109.47006 * 209.99945 * 17 15 13 20 20 H 1.48496 * 109.47091 * 330.00219 * 17 15 13 21 21 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 22 22 C 1.50704 * 119.97128 * 180.02562 * 21 6 5 23 23 C 1.38162 * 120.05734 * 359.76698 * 21 6 5 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.47210 * 20.00581 * 7 6 5 30 30 H 1.09000 * 109.47309 * 139.99621 * 7 6 5 31 31 H 0.97005 * 120.00049 * 0.02562 * 8 7 6 32 32 H 0.96998 * 120.00341 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47330 * 299.99828 * 12 11 9 34 34 H 1.09000 * 109.47650 * 59.99861 * 12 11 9 35 35 H 0.96997 * 119.99737 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.46973 * 90.00063 * 22 21 6 37 37 H 1.08992 * 109.47226 * 210.00189 * 22 21 6 38 38 H 1.09000 * 109.46823 * 330.00052 * 22 21 6 39 39 H 1.07998 * 120.02953 * 180.25220 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.4208 5.3452 -1.3608 9 6 5.0599 6.5067 -1.6034 10 8 5.2760 7.2833 -0.6931 11 7 5.4595 6.8073 -2.8550 12 6 6.1547 8.0697 -3.1186 13 6 6.4896 8.1620 -4.5849 14 1 6.2128 7.3603 -5.2537 15 6 7.1505 9.2694 -5.0727 16 7 7.4433 9.3497 -6.3525 17 14 7.6300 10.6556 -3.9161 18 1 8.9856 10.3963 -3.3679 19 1 7.6343 11.9413 -4.6592 20 1 6.6516 10.7312 -2.8016 21 6 4.0559 2.5172 -0.0011 22 6 5.5607 2.5983 -0.0011 23 6 3.4311 1.2849 0.0038 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2127 2.3204 0.0014 28 1 1.3339 4.5114 0.0008 29 1 3.2907 5.7807 0.3515 30 1 4.8526 4.9848 0.6597 31 1 4.2481 4.7258 -2.0871 32 1 5.2868 6.1880 -3.5812 33 1 5.5110 8.9040 -2.8401 34 1 7.0730 8.1080 -2.5326 35 1 7.9079 10.1290 -6.6957 36 1 5.9236 2.6173 1.0266 37 1 5.9714 1.7294 -0.5153 38 1 5.8756 3.5067 -0.5145 39 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787352356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:46 Heat of formation + Delta-G solvation = -73.278291 kcal Electronic energy + Delta-G solvation = -20679.360102 eV Core-core repulsion = 17393.138265 eV Total energy + Delta-G solvation = -3286.221838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39760 -40.74062 -38.97288 -36.27187 -35.56442 -34.37468 -33.50179 -31.98095 -29.90895 -28.80389 -27.46337 -26.28725 -24.01201 -23.15447 -21.89787 -21.60835 -19.94007 -18.69283 -18.34852 -17.61762 -17.46633 -16.65870 -16.48087 -16.29746 -16.17286 -15.32086 -15.22628 -15.02748 -14.70352 -14.48797 -14.31216 -14.29034 -14.18280 -13.47005 -13.10191 -13.07191 -12.99215 -12.74939 -12.66668 -12.29293 -11.90730 -11.86366 -11.74303 -11.63045 -11.28951 -10.89640 -10.29433 -9.77382 -9.63143 -9.15851 -8.37832 -6.44505 0.26178 0.35274 1.35588 1.37331 1.50977 1.94432 2.24150 2.30977 2.34891 2.74665 2.97876 3.58163 3.70606 3.79452 3.91892 4.13883 4.30024 4.36659 4.40572 4.43723 4.62792 4.68306 4.75618 4.77970 4.81105 4.85807 5.01870 5.08497 5.15549 5.27494 5.33227 5.37460 5.50164 5.57998 5.66121 5.76628 6.00121 6.30448 6.42451 6.57725 7.16316 7.28251 7.69094 8.76955 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035124 B = 0.002940 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.986147 B = 9521.683392 C = 9649.591413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.129 3.871 4 C -0.217 4.217 5 C -0.057 4.057 6 C -0.152 4.152 7 C 0.190 3.810 8 N -0.728 5.728 9 C 0.696 3.304 10 O -0.643 6.643 11 N -0.723 5.723 12 C 0.252 3.748 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.026 3.974 16 N -0.932 5.932 17 Si 0.939 3.061 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.260 1.260 21 C -0.026 4.026 22 C -0.123 4.123 23 C -0.168 4.168 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.407 0.593 32 H 0.404 0.596 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.272 0.728 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 -19.649 14.411 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.083 3.917 4 C -0.235 4.235 5 C -0.076 4.076 6 C -0.152 4.152 7 C 0.066 3.934 8 N -0.385 5.385 9 C 0.396 3.604 10 O -0.526 6.526 11 N -0.376 5.376 12 C 0.127 3.873 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.174 4.174 16 N -0.571 5.571 17 Si 0.762 3.238 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.184 1.184 21 C -0.027 4.027 22 C -0.179 4.179 23 C -0.186 4.186 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.168 0.832 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.239 0.761 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.626 -19.017 15.091 27.840 hybrid contribution -0.033 0.354 -0.594 0.692 sum -13.660 -18.663 14.497 27.296 Atomic orbital electron populations 1.23349 0.76398 1.05586 1.02322 1.86054 1.23513 1.26816 1.88433 1.19231 0.92534 0.84734 0.95208 1.21417 1.01186 0.91584 1.09352 1.21073 0.93427 0.98108 0.94954 1.19577 0.93962 0.93468 1.08226 1.19862 0.98215 0.92783 0.82499 1.45050 1.62341 1.19590 1.11487 1.16195 0.78802 0.82345 0.83080 1.90833 1.64509 1.52079 1.45187 1.45122 1.61547 1.23197 1.07746 1.18943 0.91295 0.82282 0.94750 1.21283 1.38662 1.05969 0.92361 0.92366 1.25596 0.94789 1.00518 0.96536 1.69986 1.41460 1.31135 1.14531 0.85839 0.79781 0.78822 0.79340 1.18950 1.19842 1.18409 1.19707 0.96591 0.91419 0.94969 1.20934 0.90042 1.03515 1.03413 1.20431 0.91742 0.98321 1.08116 0.91581 0.91776 0.86375 0.83239 0.84241 0.91618 0.91535 0.75739 0.76085 0.97172 0.97211 0.91861 0.89862 0.89965 0.91795 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.73 10.50 -92.48 -0.97 -6.70 16 3 C 0.13 2.38 6.69 22.51 0.15 2.53 16 4 C -0.22 -3.54 9.04 22.36 0.20 -3.34 16 5 C -0.06 -1.02 9.66 22.25 0.21 -0.81 16 6 C -0.15 -3.10 5.25 -19.85 -0.10 -3.20 16 7 C 0.19 4.71 4.92 85.63 0.42 5.13 16 8 N -0.73 -20.50 4.89 -482.31 -2.36 -22.86 16 9 C 0.70 27.21 8.57 179.05 1.53 28.74 16 10 O -0.64 -30.45 16.34 -3.98 -0.06 -30.51 16 11 N -0.72 -29.86 5.55 -482.30 -2.68 -32.54 16 12 C 0.25 12.62 4.50 85.63 0.38 13.00 16 13 C -0.54 -30.45 9.83 25.60 0.25 -30.19 16 14 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 15 C 0.03 1.47 5.47 84.65 0.46 1.93 16 16 N -0.93 -56.06 13.96 21.45 0.30 -55.77 16 17 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 18 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 21 C -0.03 -0.51 5.88 -19.88 -0.12 -0.63 16 22 C -0.12 -2.19 9.26 71.24 0.66 -1.53 16 23 C -0.17 -3.17 9.64 22.37 0.22 -2.96 16 24 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 25 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 26 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 28 H 0.14 2.13 8.03 -2.91 -0.02 2.11 16 29 H 0.07 1.69 8.00 -2.38 -0.02 1.68 16 30 H 0.07 1.75 7.28 -2.39 -0.02 1.73 16 31 H 0.41 9.55 8.48 -92.70 -0.79 8.76 16 32 H 0.40 14.66 8.34 -92.71 -0.77 13.88 16 33 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 34 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.06 1.35 6.33 -2.39 -0.02 1.34 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.37 329.40 0.97 -70.40 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.53 Total: 21.64 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.39 Total: 9.95 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -4.74 Total: -111.16 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.04 Total: -37.21 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -71.37 0.97 -70.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.878 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds