Wall clock time and date at job start Mon Mar 30 2020 23:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38258 * 120.00071 * 2 1 4 4 C 1.38210 * 120.00242 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00250 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99752 * 359.95911 * 5 4 3 7 7 C 1.50700 * 120.00062 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47238 * 204.99912 * 7 6 5 9 9 O 1.42901 * 109.47148 * 324.99862 * 7 6 5 10 10 C 1.52992 * 109.47257 * 84.99755 * 7 6 5 11 11 N 1.46499 * 109.47267 * 180.02562 * 10 7 6 12 12 C 1.34784 * 119.99971 * 180.02562 * 11 10 7 13 13 O 1.21583 * 119.99855 * 359.72712 * 12 11 10 14 14 N 1.34771 * 119.99547 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99515 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.46931 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47468 * 59.99623 * 20 18 16 22 22 H 1.48506 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47328 * 299.99642 * 20 18 16 24 24 C 1.38219 * 120.00047 * 180.21410 * 2 1 3 25 25 H 1.09001 * 109.47145 * 90.00301 * 1 2 3 26 26 H 1.09008 * 109.46873 * 209.99776 * 1 2 3 27 27 H 1.08999 * 109.47167 * 329.99338 * 1 2 3 28 28 H 1.08003 * 119.99514 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.99932 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00389 * 179.97438 * 5 4 3 31 31 H 0.96700 * 113.99645 * 59.99670 * 9 7 6 32 32 H 1.09004 * 109.47330 * 60.00023 * 10 7 6 33 33 H 1.09005 * 109.47124 * 300.00226 * 10 7 6 34 34 H 0.96999 * 119.99984 * 359.97438 * 11 10 7 35 35 H 0.96999 * 120.00409 * 0.02562 * 14 12 11 36 36 H 1.08996 * 109.47564 * 300.00635 * 15 14 12 37 37 H 1.09000 * 109.46872 * 60.00432 * 15 14 12 38 38 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.00018 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2718 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0014 8 1 3.7090 -3.2828 -0.4319 9 8 5.5277 -2.3633 -0.7722 10 6 4.6991 -2.8796 1.4384 11 7 5.4321 -4.1480 1.4389 12 6 5.8576 -4.6800 2.6020 13 8 5.6373 -4.1047 3.6502 14 7 6.5315 -5.8471 2.6024 15 6 6.9945 -6.4251 3.8665 16 6 7.7149 -7.7201 3.5927 17 1 7.8180 -8.0767 2.5785 18 6 8.2425 -8.4497 4.6370 19 7 8.1173 -8.0152 5.8720 20 14 9.1361 -10.0545 4.2975 21 1 10.3025 -9.7948 3.4160 22 1 9.6053 -10.6405 5.5789 23 1 8.2113 -11.0040 3.6277 24 6 2.1981 -1.1970 -0.0045 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6582 2.1326 0.0004 29 1 4.1203 2.1327 -0.0010 30 1 5.3517 0.0001 -0.0014 31 1 6.1327 -1.6843 -0.4436 32 1 3.7887 -2.9854 2.0286 33 1 5.3243 -2.0989 1.8717 34 1 5.6106 -4.6054 0.6024 35 1 6.7107 -6.3041 1.7658 36 1 7.6740 -5.7284 4.3574 37 1 6.1386 -6.6150 4.5142 38 1 8.4888 -8.5283 6.6066 39 1 1.6581 -2.1323 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:36 Heat of formation + Delta-G solvation = -69.798370 kcal Electronic energy + Delta-G solvation = -20481.302953 eV Core-core repulsion = 17195.232016 eV Total energy + Delta-G solvation = -3286.070937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16047 -39.08280 -37.39324 -34.30243 -33.75627 -33.00025 -32.28923 -31.79577 -28.48457 -27.20558 -26.70780 -23.79581 -22.48079 -22.23964 -20.80935 -20.04477 -18.07470 -17.67741 -16.47379 -16.30249 -15.93703 -15.37907 -15.07005 -14.89572 -14.55831 -14.26072 -14.13774 -13.85149 -13.50321 -13.35755 -12.97247 -12.66364 -12.50220 -12.42740 -11.94256 -11.91324 -11.63736 -11.45400 -11.18769 -10.95388 -10.84443 -10.40626 -10.27306 -9.40489 -9.35361 -9.08320 -8.89397 -8.76175 -8.64752 -7.72144 -6.12452 -4.18905 1.01553 1.10428 3.25524 3.28091 3.32885 3.35183 3.51578 3.97558 4.18190 4.32630 4.40392 4.50469 4.60054 4.75268 4.82120 4.94942 5.05110 5.15519 5.22378 5.23450 5.28608 5.36200 5.49242 5.71598 5.73631 5.80146 5.86637 6.16739 6.26229 6.30402 6.70230 6.85352 7.15826 7.32613 7.55216 7.58728 7.60467 7.94698 8.08162 8.79799 8.98385 9.36712 9.51453 10.97827 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040328 B = 0.002659 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.131743 B =10526.610990 C =10684.827512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.108 4.108 7 C 0.138 3.862 8 H 0.114 0.886 9 O -0.551 6.551 10 C 0.117 3.883 11 N -0.753 5.753 12 C 0.692 3.308 13 O -0.603 6.603 14 N -0.729 5.729 15 C 0.267 3.733 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.107 4.107 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.376 0.624 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.387 0.613 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 16.829 -15.516 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.139 4.139 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.109 4.109 7 C 0.079 3.921 8 H 0.132 0.868 9 O -0.357 6.357 10 C -0.009 4.009 11 N -0.411 5.411 12 C 0.392 3.608 13 O -0.482 6.482 14 N -0.381 5.381 15 C 0.146 3.854 16 C -0.580 4.580 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.524 5.524 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.225 0.775 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.219 0.781 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.434 16.808 -14.626 25.515 hybrid contribution 0.894 -0.770 -0.459 1.266 sum -11.540 16.037 -15.085 24.858 Atomic orbital electron populations 1.20808 0.91052 1.02997 1.02363 1.19923 0.96187 0.93069 0.99347 1.21066 0.94313 0.97541 1.00950 1.21099 0.94314 0.97927 0.99752 1.20871 0.99864 0.92003 1.00483 1.20373 0.94390 0.95393 1.00730 1.21062 0.86033 0.93948 0.91091 0.86849 1.86615 1.31407 1.61997 1.55667 1.21683 0.97276 0.86437 0.95462 1.45008 1.62742 1.25021 1.08367 1.16151 0.79318 0.81892 0.83444 1.90870 1.63490 1.63242 1.30633 1.45706 1.58300 1.21686 1.12400 1.18971 0.94567 0.92421 0.79443 1.21202 1.37055 1.06060 0.93704 0.91982 1.24950 0.96024 0.98278 0.94815 1.69974 1.44747 1.38901 0.98740 0.86464 0.79898 0.82891 0.77563 1.20092 1.21100 1.20094 1.20890 0.93206 0.97966 1.00498 0.91129 0.91323 0.91488 0.86090 0.85863 0.86058 0.77491 0.90964 0.91607 0.77049 0.78108 0.95780 0.95775 0.92429 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 4 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 5 C -0.11 -1.03 9.33 -39.58 -0.37 -1.40 16 6 C -0.11 -1.05 5.01 -104.62 -0.52 -1.57 16 7 C 0.14 1.38 3.30 -27.89 -0.09 1.29 16 8 H 0.11 1.06 8.05 -51.93 -0.42 0.64 16 9 O -0.55 -5.56 12.88 -35.23 -0.45 -6.02 16 10 C 0.12 1.53 5.32 -4.05 -0.02 1.51 16 11 N -0.75 -11.55 5.45 -65.23 -0.36 -11.90 16 12 C 0.69 14.70 8.57 -86.92 -0.74 13.95 16 13 O -0.60 -15.47 16.34 5.29 0.09 -15.38 16 14 N -0.73 -16.04 5.55 -66.41 -0.37 -16.40 16 15 C 0.27 7.30 5.43 -5.19 -0.03 7.28 16 16 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.11 -1.00 9.34 -39.58 -0.37 -1.37 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 27 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 29 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.12 0.87 6.61 -52.49 -0.35 0.52 16 31 H 0.38 2.87 7.39 45.56 0.34 3.21 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 5.12 8.36 -40.82 -0.34 4.77 16 35 H 0.39 7.30 8.34 -40.82 -0.34 6.96 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -34.63 336.74 -8.77 -43.40 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.87 Total: 9.28 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -3.60 Total: 1.62 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.01 Total: -54.07 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.37 Total: -21.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.63 -8.77 -43.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.400 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds