Wall clock time and date at job start Mon Mar 30 2020 23:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38258 * 120.00071 * 2 1 4 4 C 1.38210 * 120.00242 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00250 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99752 * 359.95911 * 5 4 3 7 7 C 1.50700 * 120.00062 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47238 * 204.99912 * 7 6 5 9 9 O 1.42901 * 109.47148 * 324.99862 * 7 6 5 10 10 C 1.52992 * 109.47257 * 84.99755 * 7 6 5 11 11 N 1.46499 * 109.47267 * 180.02562 * 10 7 6 12 12 C 1.34784 * 119.99971 * 180.02562 * 11 10 7 13 13 O 1.21583 * 119.99855 * 359.72712 * 12 11 10 14 14 N 1.34771 * 119.99547 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99515 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.46931 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47468 * 59.99623 * 20 18 16 22 22 H 1.48506 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47328 * 299.99642 * 20 18 16 24 24 C 1.38219 * 120.00047 * 180.21410 * 2 1 3 25 25 H 1.09001 * 109.47145 * 90.00301 * 1 2 3 26 26 H 1.09008 * 109.46873 * 209.99776 * 1 2 3 27 27 H 1.08999 * 109.47167 * 329.99338 * 1 2 3 28 28 H 1.08003 * 119.99514 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.99932 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00389 * 179.97438 * 5 4 3 31 31 H 0.96700 * 113.99645 * 59.99670 * 9 7 6 32 32 H 1.09004 * 109.47330 * 60.00023 * 10 7 6 33 33 H 1.09005 * 109.47124 * 300.00226 * 10 7 6 34 34 H 0.96999 * 119.99984 * 359.97438 * 11 10 7 35 35 H 0.96999 * 120.00409 * 0.02562 * 14 12 11 36 36 H 1.08996 * 109.47564 * 300.00635 * 15 14 12 37 37 H 1.09000 * 109.46872 * 60.00432 * 15 14 12 38 38 H 0.97002 * 119.99797 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.00018 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2718 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0014 8 1 3.7090 -3.2828 -0.4319 9 8 5.5277 -2.3633 -0.7722 10 6 4.6991 -2.8796 1.4384 11 7 5.4321 -4.1480 1.4389 12 6 5.8576 -4.6800 2.6020 13 8 5.6373 -4.1047 3.6502 14 7 6.5315 -5.8471 2.6024 15 6 6.9945 -6.4251 3.8665 16 6 7.7149 -7.7201 3.5927 17 1 7.8180 -8.0767 2.5785 18 6 8.2425 -8.4497 4.6370 19 7 8.1173 -8.0152 5.8720 20 14 9.1361 -10.0545 4.2975 21 1 10.3025 -9.7948 3.4160 22 1 9.6053 -10.6405 5.5789 23 1 8.2113 -11.0040 3.6277 24 6 2.1981 -1.1970 -0.0045 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6582 2.1326 0.0004 29 1 4.1203 2.1327 -0.0010 30 1 5.3517 0.0001 -0.0014 31 1 6.1327 -1.6843 -0.4436 32 1 3.7887 -2.9854 2.0286 33 1 5.3243 -2.0989 1.8717 34 1 5.6106 -4.6054 0.6024 35 1 6.7107 -6.3041 1.7658 36 1 7.6740 -5.7284 4.3574 37 1 6.1386 -6.6150 4.5142 38 1 8.4888 -8.5283 6.6066 39 1 1.6581 -2.1323 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:35 Heat of formation + Delta-G solvation = -96.305484 kcal Electronic energy + Delta-G solvation = -20482.452387 eV Core-core repulsion = 17195.232016 eV Total energy + Delta-G solvation = -3287.220372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13177 -40.47979 -38.28905 -36.18575 -35.27862 -34.29504 -33.60862 -32.58956 -29.91444 -28.40376 -27.74477 -25.12466 -24.00416 -23.10811 -21.95094 -21.37065 -19.79254 -18.53004 -18.03877 -17.36536 -17.17744 -16.76494 -16.38612 -16.30077 -15.76882 -15.39192 -15.11176 -14.91962 -14.62919 -14.40586 -14.19409 -14.00434 -13.97657 -13.38707 -13.12842 -12.99381 -12.90849 -12.66741 -12.55993 -12.22592 -12.14918 -11.85704 -11.49347 -11.38858 -11.11665 -10.78744 -10.30754 -9.75669 -9.59548 -9.53528 -8.27503 -6.44035 0.34184 0.45999 1.44091 1.48746 1.56659 1.86228 2.23264 2.40403 2.77461 3.07267 3.38330 3.46099 3.71755 3.85393 3.88171 4.03441 4.14392 4.23663 4.49431 4.51795 4.62873 4.71287 4.83595 4.87237 4.98548 5.08714 5.11966 5.27583 5.29437 5.46330 5.50041 5.53907 5.58894 5.67521 5.67795 5.85740 6.08632 6.25795 6.63381 6.67516 7.24974 7.31199 7.71555 8.84734 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040328 B = 0.002659 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.131743 B =10526.610990 C =10684.827512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.127 4.127 6 C -0.123 4.123 7 C 0.157 3.843 8 H 0.124 0.876 9 O -0.557 6.557 10 C 0.117 3.883 11 N -0.727 5.727 12 C 0.690 3.310 13 O -0.651 6.651 14 N -0.723 5.723 15 C 0.285 3.715 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.987 3.013 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.262 1.262 24 C -0.122 4.122 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.387 0.613 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.412 0.588 35 H 0.405 0.595 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 16.561 -17.748 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.123 4.123 7 C 0.097 3.903 8 H 0.141 0.859 9 O -0.365 6.365 10 C -0.008 4.008 11 N -0.384 5.384 12 C 0.390 3.610 13 O -0.534 6.534 14 N -0.376 5.376 15 C 0.162 3.838 16 C -0.594 4.594 17 H 0.102 0.898 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.810 3.190 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.140 4.140 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.237 0.763 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.249 0.751 35 H 0.240 0.760 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.078 0.922 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.473 16.563 -16.954 26.784 hybrid contribution 0.841 -0.553 0.222 1.031 sum -11.632 16.010 -16.732 25.915 Atomic orbital electron populations 1.20843 0.89607 1.03539 1.03113 1.20248 0.97450 0.93014 0.98970 1.21398 0.94585 0.98320 1.00252 1.21410 0.94688 0.98556 0.99288 1.21143 1.00796 0.92109 1.00432 1.20385 0.94683 0.95310 1.01971 1.20854 0.86161 0.94612 0.88662 0.85875 1.86595 1.31649 1.62608 1.55643 1.21860 0.96264 0.84788 0.97902 1.44762 1.61254 1.25360 1.07068 1.16320 0.78997 0.81412 0.84274 1.90838 1.65150 1.64393 1.32976 1.45297 1.58610 1.22237 1.11482 1.18409 0.92294 0.92221 0.80872 1.21577 1.36946 1.05956 0.94885 0.89831 1.26080 0.96710 1.02518 0.94329 1.70141 1.45912 1.40842 1.00078 0.85179 0.78760 0.77528 0.77561 1.18668 1.21060 1.18642 1.21118 0.93318 0.98813 1.00761 0.90199 0.91204 0.90560 0.84203 0.83998 0.84724 0.76259 0.91925 0.92335 0.75109 0.75981 0.99678 0.99654 0.92220 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.54 5.88 -19.86 -0.12 -1.66 16 3 C -0.13 -1.91 9.70 22.27 0.22 -1.69 16 4 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 5 C -0.13 -2.12 9.33 22.27 0.21 -1.92 16 6 C -0.12 -2.25 5.01 -19.86 -0.10 -2.35 16 7 C 0.16 2.91 3.30 29.85 0.10 3.01 16 8 H 0.12 2.06 8.05 -2.38 -0.02 2.04 16 9 O -0.56 -10.21 12.88 -148.98 -1.92 -12.13 16 10 C 0.12 2.99 5.32 86.38 0.46 3.45 16 11 N -0.73 -21.69 5.45 -478.54 -2.61 -24.29 16 12 C 0.69 29.64 8.57 179.05 1.53 31.17 16 13 O -0.65 -34.52 16.34 -3.98 -0.07 -34.58 16 14 N -0.72 -32.04 5.55 -482.29 -2.68 -34.72 16 15 C 0.29 16.16 5.43 85.63 0.46 16.62 16 16 C -0.56 -30.76 9.28 25.60 0.24 -30.52 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 20 Si 0.99 42.70 29.54 68.60 2.03 44.72 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 C -0.12 -2.15 9.34 22.27 0.21 -1.94 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16 27 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 29 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.13 1.75 6.61 -2.91 -0.02 1.73 16 31 H 0.39 5.23 7.39 -74.06 -0.55 4.68 16 32 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.41 9.85 8.36 -92.71 -0.78 9.08 16 35 H 0.40 14.84 8.34 -92.71 -0.77 14.07 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.40 336.74 -1.36 -77.76 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -1.01 Total: 27.20 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 4.61 Total: 12.63 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -5.00 Total: -115.61 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.98 Total: -46.71 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -76.40 -1.36 -77.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.544 kcal (2) G-P(sol) polarization free energy of solvation -76.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds