Wall clock time and date at job start Mon Mar 30 2020 23:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35893 * 117.00420 * 2 1 4 4 C 1.38751 * 120.05489 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.94638 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05046 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.94102 * 180.02562 * 6 5 4 8 8 C 1.38247 * 120.11511 * 359.75179 * 6 5 4 9 9 C 1.38164 * 120.05180 * 0.50350 * 8 6 5 10 10 C 1.50703 * 120.02311 * 179.76976 * 9 8 6 11 11 N 1.46499 * 109.47138 * 259.72354 * 10 9 8 12 12 C 1.34777 * 119.99665 * 180.28062 * 11 10 9 13 13 O 1.21583 * 120.00270 * 359.72083 * 12 11 10 14 14 N 1.34775 * 119.99585 * 179.72218 * 12 11 10 15 15 C 1.46507 * 119.99876 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46959 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99656 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00420 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99723 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47273 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46735 * 120.00472 * 20 18 16 23 23 H 1.48500 * 109.47272 * 239.99862 * 20 18 16 24 24 H 1.08994 * 109.46883 * 59.99250 * 1 2 3 25 25 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46495 * 299.99873 * 1 2 3 27 27 H 1.08003 * 120.02704 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97170 * 180.02562 * 5 4 3 29 29 H 1.08991 * 109.47314 * 90.00148 * 7 6 5 30 30 H 1.09000 * 109.46750 * 210.00309 * 7 6 5 31 31 H 1.09004 * 109.46612 * 330.00062 * 7 6 5 32 32 H 1.07998 * 119.97199 * 180.24949 * 8 6 5 33 33 H 1.09009 * 109.46601 * 139.72257 * 10 9 8 34 34 H 1.08998 * 109.47035 * 19.72765 * 10 9 8 35 35 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 36 36 H 0.97000 * 120.00523 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47039 * 300.00042 * 15 14 12 38 38 H 1.08994 * 109.46660 * 60.00264 * 15 14 12 39 39 H 0.96999 * 120.00495 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3752 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9864 5.0184 0.0028 8 6 4.0561 2.5169 0.0068 9 6 3.4312 1.2847 0.0009 10 6 4.2538 0.0220 0.0013 11 7 4.3199 -0.5183 -1.3588 12 6 5.0027 -1.6550 -1.5999 13 8 5.5681 -2.2293 -0.6896 14 7 5.0588 -2.1550 -2.8502 15 6 5.8015 -3.3903 -3.1125 16 6 5.7091 -3.7305 -4.5777 17 1 5.1525 -3.0909 -5.2465 18 6 6.3343 -4.8590 -5.0641 19 7 7.0109 -5.6388 -4.2494 20 14 6.2192 -5.2811 -6.8801 21 1 5.4063 -4.2521 -7.5769 22 1 7.5826 -5.3156 -7.4676 23 1 5.5777 -6.6109 -7.0396 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 0.2129 2.3203 0.0005 28 1 1.3342 4.5113 0.0019 29 1 4.1510 5.3414 1.0306 30 1 4.9445 4.9383 -0.5108 31 1 3.3585 5.7465 -0.5108 32 1 5.1346 2.5749 0.0113 33 1 3.7922 -0.7121 0.6619 34 1 5.2611 0.2447 0.3532 35 1 3.8684 -0.0603 -2.0850 36 1 4.6080 -1.6966 -3.5766 37 1 6.8470 -3.2510 -2.8374 38 1 5.3757 -4.2022 -2.5230 39 1 7.4505 -6.4329 -4.5915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787356356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:49 Heat of formation + Delta-G solvation = -78.573301 kcal Electronic energy + Delta-G solvation = -20835.304489 eV Core-core repulsion = 17548.853043 eV Total energy + Delta-G solvation = -3286.451447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43844 -40.64638 -38.64548 -36.44068 -35.82137 -34.36138 -32.92721 -32.25106 -29.35779 -28.72887 -27.18826 -26.58438 -24.52148 -22.95517 -21.88511 -21.65139 -19.84302 -18.96190 -18.04293 -17.50386 -17.37292 -16.68249 -16.43163 -16.35647 -15.89715 -15.28267 -15.14590 -14.95058 -14.84142 -14.43001 -14.34910 -14.05496 -13.86595 -13.54728 -13.04281 -12.95398 -12.85735 -12.74034 -12.67570 -12.32574 -12.20936 -11.75791 -11.69828 -11.43859 -11.29114 -10.80753 -10.27064 -9.92739 -9.57018 -8.98696 -8.27334 -6.43893 0.23143 0.43613 1.43909 1.45856 1.59189 1.96475 2.26137 2.39933 2.40633 2.77731 3.07385 3.61213 3.62341 3.82172 3.99143 4.18661 4.31986 4.39520 4.41937 4.48121 4.57451 4.70463 4.76702 4.79932 4.92001 5.08576 5.09398 5.21376 5.28243 5.34063 5.42796 5.49740 5.52325 5.66311 5.69397 5.86122 5.87456 6.26349 6.46330 6.67965 7.25126 7.31500 7.73053 8.85429 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.003261 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.800257 B = 8583.048329 C = 8876.189643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.125 3.875 4 C -0.208 4.208 5 C -0.071 4.071 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.069 4.069 9 C -0.149 4.149 10 C 0.197 3.803 11 N -0.724 5.724 12 C 0.692 3.308 13 O -0.650 6.650 14 N -0.723 5.723 15 C 0.286 3.714 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.988 3.012 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.403 0.597 37 H -0.014 1.014 38 H -0.016 1.016 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 23.325 6.660 28.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.079 3.921 4 C -0.226 4.226 5 C -0.089 4.089 6 C -0.131 4.131 7 C -0.164 4.164 8 C -0.087 4.087 9 C -0.150 4.150 10 C 0.073 3.927 11 N -0.380 5.380 12 C 0.392 3.608 13 O -0.533 6.533 14 N -0.377 5.377 15 C 0.162 3.838 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.811 3.189 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.169 0.831 28 H 0.171 0.829 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.241 0.759 36 H 0.238 0.762 37 H 0.004 0.996 38 H 0.002 0.998 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.379 22.436 7.499 27.683 hybrid contribution -0.299 -0.450 -1.020 1.154 sum -14.678 21.985 6.479 27.217 Atomic orbital electron populations 1.23310 0.76605 1.05059 1.02509 1.86155 1.23339 1.27178 1.88326 1.19081 0.91677 0.85131 0.96187 1.21485 1.01115 0.91632 1.08365 1.21231 0.93992 0.97774 0.95944 1.20129 0.94083 0.95997 1.02877 1.20764 1.00537 0.92155 1.02980 1.21002 1.00532 0.90294 0.96899 1.19144 0.90887 0.94782 1.10189 1.19668 0.98502 0.91894 0.82646 1.44936 1.56496 1.25329 1.11253 1.16298 0.79878 0.81229 0.83399 1.90825 1.53509 1.63482 1.45466 1.45299 1.56573 1.28348 1.07472 1.18419 0.89323 0.80245 0.95787 1.21626 1.34299 1.10279 0.92984 0.89895 1.26090 0.94006 0.95470 1.04106 1.70155 1.33870 1.15212 1.37740 0.85066 0.78182 0.78382 0.77268 1.17690 1.20341 1.20391 0.91267 0.87687 0.91157 0.83129 0.82918 0.90530 0.91414 0.90235 0.84586 0.93028 0.91707 0.75933 0.76162 0.99600 0.99762 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.20 9.73 -92.35 -0.90 -9.10 16 3 C 0.13 2.82 6.66 22.51 0.15 2.97 16 4 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 5 C -0.07 -1.01 9.69 22.26 0.22 -0.79 16 6 C -0.13 -2.07 5.88 -19.85 -0.12 -2.19 16 7 C -0.11 -1.14 10.01 71.24 0.71 -0.42 16 8 C -0.07 -1.38 9.32 22.25 0.21 -1.17 16 9 C -0.15 -3.63 5.26 -19.77 -0.10 -3.73 16 10 C 0.20 6.14 5.46 85.63 0.47 6.61 16 11 N -0.72 -24.71 5.55 -482.29 -2.68 -27.39 16 12 C 0.69 31.70 8.57 179.05 1.53 33.23 16 13 O -0.65 -36.14 16.34 -3.98 -0.06 -36.21 16 14 N -0.72 -33.59 5.55 -482.30 -2.68 -36.27 16 15 C 0.29 16.57 5.43 85.63 0.46 17.04 16 16 C -0.55 -31.22 9.28 25.60 0.24 -30.98 16 17 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 20 Si 0.99 43.20 29.54 68.60 2.03 45.22 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 0.78 7.66 -2.38 -0.02 0.76 16 27 H 0.15 1.70 6.30 -2.91 -0.02 1.68 16 28 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.08 0.61 8.08 -2.38 -0.02 0.59 16 32 H 0.14 2.49 8.03 -2.91 -0.02 2.47 16 33 H 0.05 1.82 7.86 -2.38 -0.02 1.81 16 34 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 35 H 0.41 11.52 8.48 -92.71 -0.79 10.73 16 36 H 0.40 15.66 8.34 -92.71 -0.77 14.88 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.93 336.22 1.05 -76.88 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.49 Total: 24.67 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 5.55 Total: 19.38 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -5.07 Total: -120.85 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.96 Total: -45.31 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.93 1.05 -76.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.691 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds