Wall clock time and date at job start Tue Mar 31 2020 00:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34514 * 125.78963 * 2 1 4 4 C 1.41387 * 106.83774 * 180.29614 * 3 2 1 5 5 C 1.34513 * 106.84351 * 359.56910 * 4 3 2 6 6 C 1.50699 * 125.79087 * 180.11955 * 5 4 3 7 7 N 1.46494 * 109.47236 * 90.34546 * 6 5 4 8 8 C 1.34771 * 120.00614 * 89.99869 * 7 6 5 9 9 O 1.21585 * 120.00725 * 176.22955 * 8 7 6 10 10 N 1.34784 * 119.99737 * 356.23396 * 8 7 6 11 11 C 1.46498 * 119.99984 * 184.99106 * 10 8 7 12 12 C 1.50705 * 109.47159 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99607 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00138 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00105 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99917 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47376 * 89.99784 * 16 14 12 18 18 H 1.48502 * 109.47442 * 209.99760 * 16 14 12 19 19 H 1.48503 * 109.47288 * 329.99440 * 16 14 12 20 20 C 1.46502 * 119.99874 * 269.99786 * 7 6 5 21 21 C 1.52999 * 117.50136 * 197.10053 * 20 7 6 22 22 C 1.53002 * 117.49898 * 128.47650 * 20 7 6 23 23 O 1.34304 * 125.78964 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46964 * 89.99868 * 1 2 3 25 25 H 1.08993 * 109.47677 * 210.00226 * 1 2 3 26 26 H 1.08998 * 109.47125 * 330.00628 * 1 2 3 27 27 H 1.08003 * 126.58119 * 0.02957 * 3 2 1 28 28 H 1.08001 * 126.57333 * 179.73672 * 4 3 2 29 29 H 1.09004 * 109.47102 * 210.34550 * 6 5 4 30 30 H 1.09000 * 109.47143 * 330.34093 * 6 5 4 31 31 H 0.97001 * 119.99591 * 4.99414 * 10 8 7 32 32 H 1.09002 * 109.47162 * 299.99484 * 11 10 8 33 33 H 1.08995 * 109.47433 * 60.00091 * 11 10 8 34 34 H 0.97000 * 120.00191 * 179.97438 * 15 14 12 35 35 H 1.09001 * 115.54969 * 342.81175 * 20 7 6 36 36 H 1.09005 * 117.49757 * 359.97438 * 21 20 7 37 37 H 1.08996 * 117.50063 * 145.02222 * 21 20 7 38 38 H 1.08998 * 117.49720 * 214.98030 * 22 20 7 39 39 H 1.08994 * 117.49876 * 359.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0070 5 6 3.5814 -0.7122 -0.0012 6 6 4.7706 -1.6379 -0.0027 7 7 5.1571 -1.9387 1.3779 8 6 4.6180 -2.9980 2.0132 9 8 4.9891 -3.2883 3.1341 10 7 3.6675 -3.7358 1.4059 11 6 3.0037 -4.8192 2.1352 12 6 1.9912 -5.4825 1.2375 13 1 1.8555 -5.1319 0.2250 14 6 1.2375 -6.5363 1.7090 15 7 1.4024 -6.9630 2.9420 16 14 -0.0179 -7.3581 0.5964 17 1 0.6285 -8.4738 -0.1402 18 1 -1.1352 -7.8891 1.4180 19 1 -0.5454 -6.3647 -0.3733 20 6 6.1298 -1.0879 2.0682 21 6 6.7936 -1.6511 3.3264 22 6 5.7423 -0.5459 3.4455 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.9666 2.1204 0.0004 28 1 4.5212 1.2433 -0.0129 29 1 4.5102 -2.5631 -0.5169 30 1 5.6035 -1.1585 -0.5170 31 1 3.4231 -3.5495 0.4859 32 1 3.7456 -5.5531 2.4501 33 1 2.5006 -4.4119 3.0122 34 1 0.8719 -7.7041 3.2738 35 1 6.7319 -0.4455 1.4257 36 1 6.5063 -2.6545 3.6409 37 1 7.8327 -1.3793 3.5118 38 1 6.0898 0.4530 3.7092 39 1 4.7636 -0.8218 3.8378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:10 Heat of formation + Delta-G solvation = 28.349059 kcal Electronic energy + Delta-G solvation = -22060.686848 eV Core-core repulsion = 18778.871903 eV Total energy + Delta-G solvation = -3281.814945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.46307 -39.91953 -36.39773 -34.90464 -33.71738 -33.04831 -32.13307 -31.49664 -28.19090 -27.03076 -24.35968 -23.39198 -22.01792 -21.70664 -21.47512 -20.20325 -19.33790 -17.70429 -16.79887 -16.39003 -15.76535 -15.69573 -15.02713 -14.80555 -14.45564 -14.09808 -13.73925 -13.38834 -13.04994 -12.92390 -12.85704 -12.69687 -12.53281 -12.23493 -11.92126 -11.89557 -11.62985 -11.13539 -10.96036 -10.88279 -10.76393 -10.23462 -10.08283 -9.76581 -9.34053 -8.89274 -8.69331 -8.36480 -8.13470 -7.70268 -6.12746 -4.18682 1.74432 2.61721 2.97967 3.22191 3.26099 3.32448 3.35592 3.75903 4.27338 4.33111 4.61443 4.71802 4.89377 5.05862 5.10070 5.13344 5.23417 5.27298 5.38922 5.42295 5.47123 5.48366 5.73003 5.74730 5.87039 6.00147 6.01108 6.24593 6.34821 6.61317 6.68863 7.01032 7.11272 7.32802 7.53932 7.59275 7.60156 7.85008 8.04242 8.77644 8.90041 9.32915 9.49626 10.97589 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.006395 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.601487 B = 4377.693720 C = 6009.885883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.004 4.004 3 C -0.222 4.222 4 C -0.192 4.192 5 C -0.035 4.035 6 C 0.196 3.804 7 N -0.606 5.606 8 C 0.698 3.302 9 O -0.585 6.585 10 N -0.724 5.724 11 C 0.267 3.733 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.089 3.911 21 C -0.196 4.196 22 C -0.191 4.191 23 O -0.160 6.160 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.386 0.614 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.122 0.878 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 16.145 -7.779 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 C -0.241 4.241 4 C -0.213 4.213 5 C -0.087 4.087 6 C 0.072 3.928 7 N -0.342 5.342 8 C 0.400 3.600 9 O -0.465 6.465 10 N -0.376 5.376 11 C 0.146 3.854 12 C -0.577 4.577 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.524 5.524 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.016 4.016 21 C -0.233 4.233 22 C -0.230 4.230 23 O -0.055 6.055 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.220 0.780 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.169 0.831 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.629 15.413 -6.808 17.474 hybrid contribution -0.834 0.051 -0.965 1.277 sum 3.795 15.464 -7.773 17.719 Atomic orbital electron populations 1.20324 0.85372 1.04277 1.03368 1.22489 0.94107 0.84254 1.04633 1.21487 0.92755 0.99106 1.10752 1.21460 0.97969 0.93662 1.08171 1.22993 0.83663 0.95055 1.06952 1.19782 0.90942 0.97785 0.84286 1.46636 1.45366 1.28857 1.13297 1.16155 0.80160 0.79366 0.84298 1.90619 1.64393 1.72420 1.19069 1.45931 1.39046 1.36119 1.16534 1.18982 0.91427 0.83026 0.91939 1.21207 1.20977 1.16514 0.98983 0.92038 1.24922 0.97207 0.96594 0.95221 1.69978 1.40489 1.26726 1.15178 0.86439 0.80735 0.79605 0.80275 1.20464 1.21026 1.19769 1.21348 0.94627 0.97449 0.88186 1.24167 0.96139 1.03425 0.99550 1.23207 1.01239 0.97894 1.00630 1.84069 1.16073 1.34785 1.70581 0.90196 0.90017 0.89627 0.83869 0.83849 0.88883 0.87180 0.77972 0.95583 0.95895 0.92514 0.86007 0.83106 0.90097 0.89367 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.42 36.01 0.38 -0.45 16 2 C 0.00 -0.05 7.32 -35.62 -0.26 -0.31 16 3 C -0.22 -2.82 10.81 -39.70 -0.43 -3.25 16 4 C -0.19 -2.46 10.81 -39.70 -0.43 -2.88 16 5 C -0.03 -0.50 6.90 -35.63 -0.25 -0.74 16 6 C 0.20 2.54 5.70 -5.20 -0.03 2.51 16 7 N -0.61 -9.84 2.82 -173.17 -0.49 -10.33 16 8 C 0.70 14.88 8.03 -86.92 -0.70 14.19 16 9 O -0.59 -14.24 12.23 5.29 0.06 -14.18 16 10 N -0.72 -16.24 5.42 -66.41 -0.36 -16.60 16 11 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 12 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 13 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 14 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.09 1.26 6.62 -67.93 -0.45 0.81 16 21 C -0.20 -3.02 9.64 -26.73 -0.26 -3.28 16 22 C -0.19 -2.86 9.90 -26.73 -0.26 -3.12 16 23 O -0.16 -2.64 10.65 5.70 0.06 -2.58 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.09 1.20 6.45 -51.93 -0.33 0.86 16 30 H 0.11 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.39 7.82 6.09 -40.82 -0.25 7.57 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.12 1.27 8.09 -51.93 -0.42 0.85 16 36 H 0.15 2.96 4.95 -53.44 -0.26 2.70 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.72 7.82 -51.93 -0.41 1.31 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -33.27 332.04 -8.57 -41.84 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.43 Total: 9.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.13 Total: -2.82 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.13 Total: -16.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.27 -8.57 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.191 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds