Wall clock time and date at job start Tue Mar 31 2020 00:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34514 * 125.78963 * 2 1 4 4 C 1.41387 * 106.83774 * 180.29614 * 3 2 1 5 5 C 1.34513 * 106.84351 * 359.56910 * 4 3 2 6 6 C 1.50699 * 125.79087 * 180.11955 * 5 4 3 7 7 N 1.46494 * 109.47236 * 90.34546 * 6 5 4 8 8 C 1.34771 * 120.00614 * 89.99869 * 7 6 5 9 9 O 1.21585 * 120.00725 * 176.22955 * 8 7 6 10 10 N 1.34784 * 119.99737 * 356.23396 * 8 7 6 11 11 C 1.46498 * 119.99984 * 184.99106 * 10 8 7 12 12 C 1.50705 * 109.47159 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99607 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00138 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00105 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99917 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47376 * 89.99784 * 16 14 12 18 18 H 1.48502 * 109.47442 * 209.99760 * 16 14 12 19 19 H 1.48503 * 109.47288 * 329.99440 * 16 14 12 20 20 C 1.46502 * 119.99874 * 269.99786 * 7 6 5 21 21 C 1.52999 * 117.50136 * 197.10053 * 20 7 6 22 22 C 1.53002 * 117.49898 * 128.47650 * 20 7 6 23 23 O 1.34304 * 125.78964 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46964 * 89.99868 * 1 2 3 25 25 H 1.08993 * 109.47677 * 210.00226 * 1 2 3 26 26 H 1.08998 * 109.47125 * 330.00628 * 1 2 3 27 27 H 1.08003 * 126.58119 * 0.02957 * 3 2 1 28 28 H 1.08001 * 126.57333 * 179.73672 * 4 3 2 29 29 H 1.09004 * 109.47102 * 210.34550 * 6 5 4 30 30 H 1.09000 * 109.47143 * 330.34093 * 6 5 4 31 31 H 0.97001 * 119.99591 * 4.99414 * 10 8 7 32 32 H 1.09002 * 109.47162 * 299.99484 * 11 10 8 33 33 H 1.08995 * 109.47433 * 60.00091 * 11 10 8 34 34 H 0.97000 * 120.00191 * 179.97438 * 15 14 12 35 35 H 1.09001 * 115.54969 * 342.81175 * 20 7 6 36 36 H 1.09005 * 117.49757 * 359.97438 * 21 20 7 37 37 H 1.08996 * 117.50063 * 145.02222 * 21 20 7 38 38 H 1.08998 * 117.49720 * 214.98030 * 22 20 7 39 39 H 1.08994 * 117.49876 * 359.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0070 5 6 3.5814 -0.7122 -0.0012 6 6 4.7706 -1.6379 -0.0027 7 7 5.1571 -1.9387 1.3779 8 6 4.6180 -2.9980 2.0132 9 8 4.9891 -3.2883 3.1341 10 7 3.6675 -3.7358 1.4059 11 6 3.0037 -4.8192 2.1352 12 6 1.9912 -5.4825 1.2375 13 1 1.8555 -5.1319 0.2250 14 6 1.2375 -6.5363 1.7090 15 7 1.4024 -6.9630 2.9420 16 14 -0.0179 -7.3581 0.5964 17 1 0.6285 -8.4738 -0.1402 18 1 -1.1352 -7.8891 1.4180 19 1 -0.5454 -6.3647 -0.3733 20 6 6.1298 -1.0879 2.0682 21 6 6.7936 -1.6511 3.3264 22 6 5.7423 -0.5459 3.4455 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.9666 2.1204 0.0004 28 1 4.5212 1.2433 -0.0129 29 1 4.5102 -2.5631 -0.5169 30 1 5.6035 -1.1585 -0.5170 31 1 3.4231 -3.5495 0.4859 32 1 3.7456 -5.5531 2.4501 33 1 2.5006 -4.4119 3.0122 34 1 0.8719 -7.7041 3.2738 35 1 6.7319 -0.4455 1.4257 36 1 6.5063 -2.6545 3.6409 37 1 7.8327 -1.3793 3.5118 38 1 6.0898 0.4530 3.7092 39 1 4.7636 -0.8218 3.8378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:10 Heat of formation + Delta-G solvation = 6.503136 kcal Electronic energy + Delta-G solvation = -22061.634159 eV Core-core repulsion = 18778.871903 eV Total energy + Delta-G solvation = -3282.762255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.49691 -41.45762 -37.87876 -36.44072 -35.50771 -34.11726 -33.95616 -32.61559 -29.50315 -28.87967 -25.46756 -25.13842 -23.28390 -23.23246 -22.59180 -21.34775 -20.91678 -19.21974 -18.28891 -17.72047 -17.43216 -16.90409 -16.58437 -16.41713 -16.08754 -15.30840 -15.16633 -14.78589 -14.36750 -14.09593 -14.07549 -13.96117 -13.67427 -13.65819 -13.63395 -13.17704 -12.93532 -12.74548 -12.67288 -12.33701 -12.21999 -12.05559 -11.49799 -11.22243 -10.82363 -10.75719 -10.54649 -9.96119 -9.42026 -9.17281 -8.30607 -6.47122 0.68747 1.39983 1.43270 1.53587 1.57698 1.91006 1.98515 2.20481 2.36557 3.03488 3.06139 3.11551 3.73197 3.87045 4.02033 4.10659 4.15312 4.19430 4.23247 4.47212 4.56314 4.64818 4.68571 4.84803 4.86977 4.92593 5.01372 5.07981 5.11196 5.23416 5.30911 5.39654 5.44782 5.68446 5.72390 5.78373 5.91215 6.01522 6.31835 6.63707 7.11164 7.22824 7.67553 8.81837 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.006395 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.601487 B = 4377.693720 C = 6009.885883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.031 4.031 3 C -0.223 4.223 4 C -0.181 4.181 5 C -0.062 4.062 6 C 0.192 3.808 7 N -0.597 5.597 8 C 0.690 3.310 9 O -0.624 6.624 10 N -0.722 5.722 11 C 0.290 3.710 12 C -0.553 4.553 13 H 0.076 0.924 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.984 3.016 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.258 1.258 20 C 0.097 3.903 21 C -0.208 4.208 22 C -0.192 4.192 23 O -0.197 6.197 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.170 0.830 28 H 0.176 0.824 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.398 0.602 32 H -0.012 1.012 33 H -0.020 1.020 34 H 0.269 0.731 35 H 0.180 0.820 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 18.552 -10.443 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.242 4.242 4 C -0.201 4.201 5 C -0.113 4.113 6 C 0.070 3.930 7 N -0.331 5.331 8 C 0.392 3.608 9 O -0.507 6.507 10 N -0.376 5.376 11 C 0.166 3.834 12 C -0.591 4.591 13 H 0.094 0.906 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.807 3.193 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.182 1.182 20 C -0.006 4.006 21 C -0.246 4.246 22 C -0.231 4.231 23 O -0.095 6.095 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.187 0.813 28 H 0.193 0.807 29 H 0.105 0.895 30 H 0.180 0.820 31 H 0.234 0.766 32 H 0.006 0.994 33 H -0.002 1.002 34 H 0.078 0.922 35 H 0.197 0.803 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.139 17.883 -9.519 20.900 hybrid contribution -0.944 -0.616 -0.075 1.130 sum 4.195 17.267 -9.594 20.194 Atomic orbital electron populations 1.20457 0.83861 1.04420 1.04564 1.23189 0.95424 0.84351 1.05131 1.21895 0.92735 0.99948 1.09639 1.21877 0.99083 0.93118 1.06014 1.23283 0.83269 0.96114 1.08657 1.20202 0.92471 0.98177 0.82185 1.46680 1.44691 1.27150 1.14556 1.16446 0.79889 0.80418 0.84023 1.90655 1.65369 1.73740 1.20889 1.45564 1.39572 1.35672 1.16839 1.18357 0.90459 0.83274 0.91263 1.21518 1.21146 1.16931 0.99527 0.90565 1.26034 0.99397 0.97090 0.96791 1.70139 1.41772 1.27402 1.17500 0.85174 0.77460 0.78619 0.78082 1.19308 1.20624 1.18172 1.21940 0.93673 0.96575 0.88445 1.23960 0.98008 1.01209 1.01387 1.23161 0.98956 0.99375 1.01631 1.84039 1.17417 1.36470 1.71544 0.88439 0.91976 0.87311 0.81269 0.80665 0.89461 0.81995 0.76600 0.99387 1.00248 0.92172 0.80284 0.87883 0.86619 0.85645 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.42 71.24 0.74 -0.85 16 2 C -0.03 -0.83 7.32 24.83 0.18 -0.65 16 3 C -0.22 -5.09 10.81 22.19 0.24 -4.85 16 4 C -0.18 -4.00 10.81 22.19 0.24 -3.76 16 5 C -0.06 -1.68 6.90 24.83 0.17 -1.50 16 6 C 0.19 4.51 5.70 85.63 0.49 5.00 16 7 N -0.60 -18.79 2.82 -820.06 -2.32 -21.10 16 8 C 0.69 30.71 8.03 179.05 1.44 32.15 16 9 O -0.62 -32.59 12.23 -3.98 -0.05 -32.64 16 10 N -0.72 -34.09 5.42 -482.29 -2.61 -36.70 16 11 C 0.29 16.94 5.43 85.64 0.47 17.40 16 12 C -0.55 -31.69 9.28 25.60 0.24 -31.45 16 13 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 14 C 0.01 0.37 5.46 84.65 0.46 0.84 16 15 N -0.93 -57.51 13.29 21.44 0.28 -57.23 16 16 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 C 0.10 2.48 6.62 44.99 0.30 2.78 16 21 C -0.21 -6.27 9.64 30.60 0.29 -5.98 16 22 C -0.19 -5.55 9.90 30.60 0.30 -5.24 16 23 O -0.20 -6.51 10.65 -2.51 -0.03 -6.54 16 24 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.09 2.15 6.45 -2.39 -0.02 2.13 16 30 H 0.16 2.10 8.03 -2.39 -0.02 2.08 16 31 H 0.40 16.64 6.09 -92.71 -0.56 16.08 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H -0.02 -1.35 8.14 -2.39 -0.02 -1.36 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.18 2.59 8.09 -2.39 -0.02 2.57 16 36 H 0.10 4.27 4.95 -26.37 -0.13 4.14 16 37 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.81 7.82 -2.39 -0.02 1.79 16 Total: -1.00 -79.39 332.04 3.25 -76.14 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.38 Total: 28.61 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.56 Total: 3.89 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.64 Total: -115.03 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.08 Total: -39.18 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -79.39 3.25 -76.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.643 kcal (2) G-P(sol) polarization free energy of solvation -79.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds