Wall clock time and date at job start Tue Mar 31 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38616 * 120.44370 * 2 1 4 4 C 1.38575 * 118.39770 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.45038 * 180.02562 * 4 3 2 6 6 O 1.45200 * 109.46954 * 359.97438 * 5 4 3 7 7 C 1.34222 * 117.00098 * 179.97438 * 6 5 4 8 8 O 1.20822 * 120.00130 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99989 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.47031 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47497 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47527 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99749 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00145 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00191 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99982 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47158 * 90.00216 * 17 15 13 19 19 H 1.48504 * 109.47174 * 209.99759 * 17 15 13 20 20 H 1.48504 * 109.47239 * 330.00047 * 17 15 13 21 21 N 1.32349 * 119.10740 * 0.27297 * 4 3 2 22 22 C 1.31779 * 120.81296 * 359.44728 * 21 4 3 23 23 N 1.31809 * 121.75690 * 0.57015 * 22 21 4 24 24 H 1.09007 * 109.47359 * 90.00143 * 1 2 3 25 25 H 1.08997 * 109.47200 * 209.99679 * 1 2 3 26 26 H 1.08993 * 109.47310 * 330.00071 * 1 2 3 27 27 H 1.08006 * 120.80442 * 0.04204 * 3 2 1 28 28 H 1.09000 * 109.47318 * 119.99331 * 5 4 3 29 29 H 1.09000 * 109.47161 * 239.99962 * 5 4 3 30 30 H 1.09003 * 109.47158 * 299.99912 * 9 7 6 31 31 H 1.09003 * 109.47345 * 60.00083 * 9 7 6 32 32 H 1.09003 * 109.46727 * 299.99747 * 10 9 7 33 33 H 1.08998 * 109.47391 * 60.00135 * 10 9 7 34 34 H 1.09003 * 109.47242 * 300.00337 * 11 10 9 35 35 H 1.09003 * 109.47442 * 59.99524 * 11 10 9 36 36 H 1.09007 * 109.46492 * 300.00140 * 12 11 10 37 37 H 1.09003 * 109.47168 * 59.99351 * 12 11 10 38 38 H 0.96994 * 120.00580 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.12416 * 180.26820 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5942 1.1456 -0.0005 5 6 4.4039 2.4167 0.0000 6 8 3.5093 3.5603 0.0005 7 6 4.0758 4.7771 0.0016 8 8 5.2793 4.8832 0.0016 9 6 3.2106 6.0111 0.0015 10 6 4.0990 7.2568 0.0022 11 6 3.2207 8.5096 0.0029 12 6 4.1090 9.7553 0.0029 13 6 3.2439 10.9892 0.0041 14 1 2.1680 10.8944 0.0044 15 6 3.8258 12.2391 0.0049 16 7 3.0709 13.3160 0.0055 17 14 5.6866 12.4031 0.0052 18 1 6.1798 12.4474 -1.3949 19 1 6.0732 13.6540 0.7059 20 1 6.2861 11.2383 0.7046 21 7 4.1964 -0.0330 -0.0066 22 6 3.4956 -1.1490 -0.0011 23 7 2.1776 -1.1406 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6898 2.1419 0.0007 28 1 5.0327 2.4465 0.8898 29 1 5.0322 2.4477 -0.8902 30 1 2.5820 6.0141 -0.8889 31 1 2.5806 6.0132 0.8911 32 1 4.7279 7.2540 0.8925 33 1 4.7287 7.2546 -0.8875 34 1 2.5914 8.5126 -0.8871 35 1 2.5913 8.5117 0.8928 36 1 4.7386 9.7524 0.8927 37 1 4.7381 9.7530 -0.8873 38 1 3.4802 14.1954 0.0057 39 1 4.0152 -2.0959 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805901217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:30 Heat of formation + Delta-G solvation = -63.039022 kcal Electronic energy + Delta-G solvation = -20000.881981 eV Core-core repulsion = 16715.104151 eV Total energy + Delta-G solvation = -3285.777830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57692 -40.59831 -37.11597 -35.18951 -35.01813 -33.36105 -32.67042 -30.51005 -29.42326 -27.89171 -26.13776 -24.55581 -22.71921 -21.99436 -20.62568 -20.13926 -18.19420 -17.43892 -17.21923 -17.05895 -16.61229 -15.84873 -15.75469 -15.65664 -14.98087 -14.23883 -13.95179 -13.90195 -13.61023 -13.29930 -13.05853 -12.73659 -12.55986 -12.52314 -12.25037 -11.83007 -11.39605 -11.27937 -11.21517 -10.85309 -10.65655 -10.65129 -10.59632 -9.91987 -9.90326 -9.72400 -9.71703 -9.58552 -9.17353 -8.52949 -6.03861 -4.01826 0.48038 0.54272 2.08171 2.15899 3.26822 3.32354 3.39800 3.44645 3.59970 3.63066 3.91896 4.46300 4.46595 4.57237 4.65016 4.81320 4.88128 4.98499 5.06053 5.07231 5.11415 5.18642 5.30673 5.32022 5.45496 5.56579 5.88235 5.94729 5.97436 6.15518 6.27466 6.55684 6.56449 6.69733 6.90636 7.31168 7.43925 7.57664 7.63263 7.80489 8.54102 9.00862 9.59102 11.09531 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040796 B = 0.002390 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.176732 B =11713.226225 C =12357.746163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.205 4.205 4 C 0.175 3.825 5 C 0.116 3.884 6 O -0.360 6.360 7 C 0.465 3.535 8 O -0.500 6.500 9 C -0.110 4.110 10 C -0.112 4.112 11 C -0.102 4.102 12 C -0.015 4.015 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 N -0.522 5.522 22 C 0.304 3.696 23 N -0.524 5.524 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.263 0.737 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -28.785 0.006 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.031 3.969 3 C -0.227 4.227 4 C 0.029 3.971 5 C 0.042 3.958 6 O -0.278 6.278 7 C 0.308 3.692 8 O -0.386 6.386 9 C -0.147 4.147 10 C -0.150 4.150 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 N -0.238 5.238 22 C 0.016 3.984 23 N -0.240 5.240 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.176 0.824 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.241 -29.428 0.003 29.514 hybrid contribution 0.776 0.870 -0.035 1.167 sum -1.465 -28.558 -0.032 28.596 Atomic orbital electron populations 1.20824 0.87436 1.04351 1.03952 1.21841 0.97904 0.88027 0.89153 1.22631 0.95442 1.01230 1.03371 1.21130 0.91733 0.92964 0.91238 1.21349 0.89915 0.79520 1.05052 1.86419 1.41319 1.15153 1.84875 1.24249 0.88890 0.84148 0.71948 1.90698 1.16339 1.86906 1.44697 1.21615 0.98713 0.88513 1.05904 1.21630 0.97981 0.92092 1.03298 1.21473 0.98057 0.93126 1.01307 1.19576 0.95812 0.93506 0.96385 1.21160 0.94816 0.89180 1.50705 0.91045 1.25047 0.98091 0.95896 0.94590 1.69915 1.35326 0.97855 1.51285 0.86774 0.86342 0.77623 0.78534 1.20312 1.21433 1.18934 1.67976 1.42227 0.98377 1.15190 1.24934 0.86689 0.96354 0.90455 1.68271 1.10337 1.30574 1.14810 0.89421 0.89808 0.89716 0.82361 0.88148 0.88159 0.87510 0.87507 0.91443 0.91442 0.92556 0.92522 0.96571 0.97003 0.92771 0.78307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.18 1.46 6.82 -82.25 -0.56 0.90 16 3 C -0.21 -1.76 9.17 -39.32 -0.36 -2.12 16 4 C 0.17 1.71 6.82 -82.24 -0.56 1.15 16 5 C 0.12 1.13 6.03 36.01 0.22 1.35 16 6 O -0.36 -3.71 8.77 -39.24 -0.34 -4.06 16 7 C 0.46 5.67 7.96 36.01 0.29 5.96 16 8 O -0.50 -7.69 15.73 -18.75 -0.29 -7.98 16 9 C -0.11 -1.23 5.81 -27.88 -0.16 -1.40 16 10 C -0.11 -1.70 4.51 -26.73 -0.12 -1.82 16 11 C -0.10 -1.88 5.15 -26.73 -0.14 -2.01 16 12 C -0.02 -0.36 4.04 -27.89 -0.11 -0.48 16 13 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 14 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 15 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 17 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 21 N -0.52 -5.26 10.38 -10.80 -0.11 -5.37 16 22 C 0.30 2.62 12.28 -92.15 -1.13 1.49 16 23 N -0.52 -4.88 10.38 -10.80 -0.11 -4.99 16 24 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 27 H 0.16 1.14 7.10 -52.48 -0.37 0.77 16 28 H 0.10 0.97 8.13 -51.93 -0.42 0.54 16 29 H 0.10 0.97 8.13 -51.93 -0.42 0.54 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.07 1.07 8.10 -51.93 -0.42 0.64 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.38 7.20 -51.92 -0.37 0.01 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -33.83 337.02 -8.18 -42.01 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -5.79 Total: -4.30 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.71 Total: -10.48 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.55 Total: -37.53 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.64 Total: -12.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.83 -8.18 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805901217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.032 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds