Wall clock time and date at job start Tue Mar 31 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38616 * 120.44370 * 2 1 4 4 C 1.38575 * 118.39770 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.45038 * 180.02562 * 4 3 2 6 6 O 1.45200 * 109.46954 * 359.97438 * 5 4 3 7 7 C 1.34222 * 117.00098 * 179.97438 * 6 5 4 8 8 O 1.20822 * 120.00130 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99989 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.47031 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47497 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47527 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99749 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00145 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00191 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99982 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47158 * 90.00216 * 17 15 13 19 19 H 1.48504 * 109.47174 * 209.99759 * 17 15 13 20 20 H 1.48504 * 109.47239 * 330.00047 * 17 15 13 21 21 N 1.32349 * 119.10740 * 0.27297 * 4 3 2 22 22 C 1.31779 * 120.81296 * 359.44728 * 21 4 3 23 23 N 1.31809 * 121.75690 * 0.57015 * 22 21 4 24 24 H 1.09007 * 109.47359 * 90.00143 * 1 2 3 25 25 H 1.08997 * 109.47200 * 209.99679 * 1 2 3 26 26 H 1.08993 * 109.47310 * 330.00071 * 1 2 3 27 27 H 1.08006 * 120.80442 * 0.04204 * 3 2 1 28 28 H 1.09000 * 109.47318 * 119.99331 * 5 4 3 29 29 H 1.09000 * 109.47161 * 239.99962 * 5 4 3 30 30 H 1.09003 * 109.47158 * 299.99912 * 9 7 6 31 31 H 1.09003 * 109.47345 * 60.00083 * 9 7 6 32 32 H 1.09003 * 109.46727 * 299.99747 * 10 9 7 33 33 H 1.08998 * 109.47391 * 60.00135 * 10 9 7 34 34 H 1.09003 * 109.47242 * 300.00337 * 11 10 9 35 35 H 1.09003 * 109.47442 * 59.99524 * 11 10 9 36 36 H 1.09007 * 109.46492 * 300.00140 * 12 11 10 37 37 H 1.09003 * 109.47168 * 59.99351 * 12 11 10 38 38 H 0.96994 * 120.00580 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.12416 * 180.26820 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5942 1.1456 -0.0005 5 6 4.4039 2.4167 0.0000 6 8 3.5093 3.5603 0.0005 7 6 4.0758 4.7771 0.0016 8 8 5.2793 4.8832 0.0016 9 6 3.2106 6.0111 0.0015 10 6 4.0990 7.2568 0.0022 11 6 3.2207 8.5096 0.0029 12 6 4.1090 9.7553 0.0029 13 6 3.2439 10.9892 0.0041 14 1 2.1680 10.8944 0.0044 15 6 3.8258 12.2391 0.0049 16 7 3.0709 13.3160 0.0055 17 14 5.6866 12.4031 0.0052 18 1 6.1798 12.4474 -1.3949 19 1 6.0732 13.6540 0.7059 20 1 6.2861 11.2383 0.7046 21 7 4.1964 -0.0330 -0.0066 22 6 3.4956 -1.1490 -0.0011 23 7 2.1776 -1.1406 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6898 2.1419 0.0007 28 1 5.0327 2.4465 0.8898 29 1 5.0322 2.4477 -0.8902 30 1 2.5820 6.0141 -0.8889 31 1 2.5806 6.0132 0.8911 32 1 4.7279 7.2540 0.8925 33 1 4.7287 7.2546 -0.8875 34 1 2.5914 8.5126 -0.8871 35 1 2.5913 8.5117 0.8928 36 1 4.7386 9.7524 0.8927 37 1 4.7381 9.7530 -0.8873 38 1 3.4802 14.1954 0.0057 39 1 4.0152 -2.0959 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805901217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:29 Heat of formation + Delta-G solvation = -82.598681 kcal Electronic energy + Delta-G solvation = -20001.730152 eV Core-core repulsion = 16715.104151 eV Total energy + Delta-G solvation = -3286.626000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24884 -41.51055 -38.06308 -36.66035 -35.65869 -34.63941 -33.99170 -32.06404 -30.12432 -28.67198 -27.58516 -25.28732 -24.11534 -22.72266 -21.92911 -21.49402 -19.03666 -18.80808 -18.16275 -17.99278 -17.94875 -16.66988 -16.50683 -16.37629 -16.26962 -15.98503 -14.90147 -14.89085 -14.62584 -14.18856 -14.00727 -13.77950 -13.75968 -13.69353 -13.41950 -13.06295 -12.87094 -12.35676 -12.23848 -12.10193 -11.91515 -11.75412 -11.73327 -11.38063 -11.32592 -11.28859 -11.22646 -10.74410 -10.53263 -10.38287 -8.28008 -6.30988 -0.18016 -0.08723 1.14107 1.31011 1.36285 1.37976 1.50110 2.37133 2.62539 2.90707 3.07628 3.08414 3.30693 3.72966 3.79444 3.96912 4.04756 4.04828 4.13517 4.25773 4.38809 4.51711 4.61411 4.63706 4.73386 4.77443 4.82881 4.85325 5.05854 5.12347 5.17907 5.21732 5.34849 5.40087 5.62338 5.67418 5.70468 5.92790 6.31303 6.65158 6.77727 6.99003 7.33827 8.88495 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040796 B = 0.002390 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.176732 B =11713.226225 C =12357.746163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.171 3.829 3 C -0.209 4.209 4 C 0.161 3.839 5 C 0.119 3.881 6 O -0.349 6.349 7 C 0.472 3.528 8 O -0.536 6.536 9 C -0.103 4.103 10 C -0.104 4.104 11 C -0.094 4.094 12 C -0.018 4.018 13 C -0.529 4.529 14 H 0.038 0.962 15 C 0.002 3.998 16 N -0.951 5.951 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.250 1.250 21 N -0.542 5.542 22 C 0.298 3.702 23 N -0.540 5.540 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.172 0.828 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.265 0.735 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 -30.394 -0.025 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.230 4.230 4 C 0.016 3.984 5 C 0.044 3.956 6 O -0.265 6.265 7 C 0.317 3.683 8 O -0.425 6.425 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.132 4.132 12 C -0.056 4.056 13 C -0.567 4.567 14 H 0.056 0.944 15 C -0.195 4.195 16 N -0.592 5.592 17 Si 0.771 3.229 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.173 1.173 21 N -0.258 5.258 22 C 0.011 3.989 23 N -0.256 5.256 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.190 0.810 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.141 -31.066 -0.028 31.139 hybrid contribution 0.627 1.326 -0.027 1.467 sum -1.515 -29.740 -0.055 29.778 Atomic orbital electron populations 1.20929 0.85236 1.05279 1.04897 1.22380 0.99396 0.87669 0.88027 1.22798 0.94963 1.02030 1.03233 1.21188 0.92388 0.92841 0.91990 1.21345 0.89857 0.79392 1.04977 1.86395 1.40996 1.14783 1.84350 1.24347 0.88332 0.84782 0.70879 1.90697 1.17877 1.87391 1.46562 1.21530 0.97987 0.86138 1.08325 1.21413 0.97757 0.92424 1.02584 1.21324 0.97687 0.92379 1.01782 1.19588 0.95931 0.93801 0.96256 1.21558 0.94049 0.91338 1.49777 0.94409 1.26012 1.03483 0.95588 0.94411 1.70061 1.37655 0.98549 1.52973 0.85693 0.79942 0.78107 0.79118 1.19303 1.21026 1.17334 1.67986 1.42865 0.98848 1.16133 1.25506 0.86837 0.96970 0.89626 1.68358 1.10657 1.31162 1.15429 0.88290 0.89616 0.88056 0.81014 0.88296 0.88314 0.85063 0.85074 0.92278 0.92199 0.92102 0.92115 0.96644 0.96739 0.92590 0.75731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.22 71.24 0.73 -0.11 16 2 C 0.17 2.54 6.82 42.58 0.29 2.83 16 3 C -0.21 -3.22 9.17 22.44 0.21 -3.02 16 4 C 0.16 2.97 6.82 42.56 0.29 3.26 16 5 C 0.12 2.20 6.03 71.24 0.43 2.63 16 6 O -0.35 -6.47 8.77 -51.34 -0.45 -6.92 16 7 C 0.47 10.54 7.96 71.24 0.57 11.10 16 8 O -0.54 -15.85 15.73 21.98 0.35 -15.50 16 9 C -0.10 -2.00 5.81 29.85 0.17 -1.82 16 10 C -0.10 -2.94 4.51 30.60 0.14 -2.80 16 11 C -0.09 -3.31 5.15 30.59 0.16 -3.15 16 12 C -0.02 -0.85 4.04 29.84 0.12 -0.73 16 13 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 14 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 15 C 0.00 0.09 5.47 84.65 0.46 0.56 16 16 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 17 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 20 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 21 N -0.54 -10.51 10.38 -188.07 -1.95 -12.46 16 22 C 0.30 4.84 12.28 180.88 2.22 7.06 16 23 N -0.54 -9.35 10.38 -188.07 -1.95 -11.31 16 24 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.46 8.10 -2.39 -0.02 0.44 16 27 H 0.17 2.05 7.10 -2.91 -0.02 2.03 16 28 H 0.10 1.85 8.13 -2.39 -0.02 1.84 16 29 H 0.10 1.85 8.13 -2.39 -0.02 1.83 16 30 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.02 0.71 7.20 -2.38 -0.02 0.69 16 37 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.48 337.02 5.19 -68.29 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 0.98 Total: 4.85 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 6.03 Total: -14.23 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.60 Total: -83.29 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.10 Total: -22.43 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -73.48 5.19 -68.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805901217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.307 kcal (2) G-P(sol) polarization free energy of solvation -73.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds