Wall clock time and date at job start Tue Mar 31 2020 01:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35450 * 126.77526 * 2 1 4 4 C 1.41375 * 103.98779 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.80544 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.86838 * 325.40871 * 5 4 3 7 7 C 1.54326 * 109.88411 * 86.42639 * 5 4 3 8 8 C 1.55151 * 102.94169 * 141.60924 * 7 5 4 9 9 C 1.54905 * 101.58370 * 324.49980 * 8 7 5 10 10 N 1.47025 * 109.88230 * 204.23469 * 5 4 3 11 11 C 1.34776 * 125.64827 * 61.61900 * 10 5 4 12 12 O 1.21282 * 119.99939 * 0.02562 * 11 10 5 13 13 C 1.50701 * 120.00160 * 179.97438 * 11 10 5 14 14 C 1.52997 * 109.47058 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46772 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99797 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00165 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00172 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47343 * 90.00517 * 19 17 15 21 21 H 1.48508 * 109.47283 * 210.00285 * 19 17 15 22 22 H 1.48499 * 109.47257 * 330.00326 * 19 17 15 23 23 N 1.30174 * 106.39554 * 359.97438 * 4 3 2 24 24 O 1.20925 * 111.60250 * 0.02562 * 23 4 3 25 25 H 1.08997 * 109.46571 * 90.00289 * 1 2 3 26 26 H 1.08998 * 109.47074 * 210.00158 * 1 2 3 27 27 H 1.09000 * 109.47098 * 330.00306 * 1 2 3 28 28 H 1.08002 * 128.01009 * 359.97438 * 3 2 1 29 29 H 1.08996 * 110.71669 * 259.97509 * 7 5 4 30 30 H 1.08999 * 110.71780 * 23.24445 * 7 5 4 31 31 H 1.09002 * 111.00315 * 82.57366 * 8 7 5 32 32 H 1.08996 * 111.00428 * 206.41841 * 8 7 5 33 33 H 1.09003 * 110.36699 * 155.85066 * 9 8 7 34 34 H 1.09000 * 110.36525 * 278.05921 * 9 8 7 35 35 H 1.08996 * 109.46960 * 300.00300 * 13 11 10 36 36 H 1.09009 * 109.46387 * 60.00437 * 13 11 10 37 37 H 1.08996 * 109.47527 * 300.00010 * 14 13 11 38 38 H 1.08995 * 109.47011 * 60.00812 * 14 13 11 39 39 H 0.96995 * 120.00692 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5374 0.0006 5 6 4.9211 1.3001 0.0014 6 1 4.8138 2.2155 -0.5805 7 6 5.3272 1.6436 1.4501 8 6 6.8672 1.4551 1.4332 9 6 7.0231 0.2557 0.4655 10 7 5.9908 0.4660 -0.5657 11 6 6.0221 -0.0255 -1.8202 12 8 5.1135 0.2125 -2.5875 13 6 7.1866 -0.8697 -2.2700 14 6 6.9754 -1.2967 -3.7239 15 6 8.1397 -2.1414 -4.1735 16 1 8.9494 -2.3523 -3.4906 17 6 8.1716 -2.6442 -5.4569 18 7 9.1878 -3.3811 -5.8494 19 14 6.7715 -2.2790 -6.6382 20 1 7.0676 -1.0307 -7.3860 21 1 6.6240 -3.4056 -7.5945 22 1 5.5098 -2.1105 -5.8735 23 7 3.4764 -0.7563 0.0015 24 8 2.3096 -1.0735 0.0010 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.0345 2.1271 -0.0004 29 1 5.0675 2.6748 1.6892 30 1 4.8620 0.9543 2.1547 31 1 7.3650 2.3416 1.0402 32 1 7.2413 1.2071 2.4265 33 1 8.0156 0.2585 0.0148 34 1 6.8495 -0.6823 0.9928 35 1 8.1068 -0.2910 -2.1908 36 1 7.2586 -1.7552 -1.6384 37 1 6.0552 -1.8755 -3.8027 38 1 6.9031 -0.4115 -4.3557 39 1 9.2102 -3.7351 -6.7521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812460306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:45 Heat of formation + Delta-G solvation = -7.370129 kcal Electronic energy + Delta-G solvation = -21783.638589 eV Core-core repulsion = 18500.274743 eV Total energy + Delta-G solvation = -3283.363845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.90251 -41.19897 -38.69365 -35.65565 -35.17288 -34.16006 -33.47478 -32.49814 -30.08951 -28.61912 -28.06926 -25.16182 -24.09773 -23.19190 -22.49250 -21.25622 -19.73625 -19.07296 -18.62298 -18.35981 -17.82821 -17.25037 -16.47349 -16.31209 -15.99060 -15.19592 -14.78860 -14.58858 -14.55977 -14.51311 -14.32500 -13.98648 -13.82310 -13.52498 -13.26323 -13.18725 -12.96154 -12.78312 -12.33356 -12.09156 -12.05435 -12.03045 -11.84860 -11.72727 -11.47138 -11.06388 -10.83375 -10.78226 -10.25002 -9.80590 -8.36843 -6.39977 0.56866 1.25136 1.27038 1.28884 1.44954 1.58203 1.92556 2.29315 2.30003 2.98104 3.13815 3.47317 3.56209 3.72074 3.89472 4.03799 4.14033 4.19572 4.27939 4.35276 4.38000 4.46327 4.57581 4.69554 4.74352 4.80675 4.87335 4.88063 4.92524 4.99875 5.07608 5.21125 5.24545 5.28990 5.34025 5.37900 5.53704 6.17698 6.41074 6.64873 7.13101 7.25312 7.37885 8.78960 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.004960 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.932739 B = 5643.571389 C = 6823.906735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.037 4.037 3 C -0.237 4.237 4 C 0.004 3.996 5 C 0.202 3.798 6 H 0.095 0.905 7 C -0.106 4.106 8 C -0.117 4.117 9 C 0.086 3.914 10 N -0.615 5.615 11 C 0.529 3.471 12 O -0.582 6.582 13 C -0.108 4.108 14 C 0.011 3.989 15 C -0.531 4.531 16 H 0.051 0.949 17 C 0.018 3.982 18 N -0.940 5.940 19 Si 0.937 3.063 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.271 1.271 23 N -0.392 5.392 24 O 0.073 5.927 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.201 0.799 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.000 1.000 38 H 0.010 0.990 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 14.488 20.596 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C -0.258 4.258 4 C -0.156 4.156 5 C 0.098 3.902 6 H 0.113 0.887 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.036 4.036 10 N -0.349 5.349 11 C 0.320 3.680 12 O -0.462 6.462 13 C -0.147 4.147 14 C -0.027 4.027 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.180 4.180 18 N -0.580 5.580 19 Si 0.761 3.239 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.196 1.196 23 N -0.099 5.099 24 O 0.009 5.991 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.137 0.863 28 H 0.218 0.782 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.019 0.981 38 H 0.028 0.972 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.262 13.432 19.965 27.972 hybrid contribution -0.605 0.219 -1.139 1.308 sum -14.867 13.651 18.826 27.601 Atomic orbital electron populations 1.20559 0.80738 1.06344 1.05059 1.25402 0.98205 0.85388 1.00994 1.22704 0.89899 1.02426 1.10779 1.24191 0.98769 0.90302 1.02306 1.20236 0.80800 0.91388 0.97809 0.88707 1.22675 0.96754 1.04365 0.90675 1.22818 0.94900 0.97324 1.00397 1.22670 0.91616 1.00204 0.89085 1.48609 1.23141 1.51810 1.11298 1.20904 0.87801 0.78987 0.80290 1.90614 1.40370 1.60711 1.54494 1.21437 0.96051 0.99104 0.98152 1.19169 0.95290 0.95336 0.92936 1.21367 1.05806 1.31354 0.98331 0.93072 1.25745 0.97978 0.94367 0.99883 1.70007 1.32292 1.36146 1.19571 0.85859 0.80387 0.78622 0.79016 1.18855 1.19803 1.19561 1.73827 0.97513 1.17747 1.20823 1.84775 1.11487 1.34739 1.68082 0.88809 0.88856 0.86261 0.78228 0.86207 0.90801 0.88821 0.86766 0.89197 0.91545 0.87767 0.89225 0.98131 0.97195 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.45 71.24 0.74 -0.03 16 2 C -0.04 -0.82 7.49 25.04 0.19 -0.63 16 3 C -0.24 -5.34 11.06 22.40 0.25 -5.10 16 4 C 0.00 0.12 5.38 43.58 0.23 0.36 16 5 C 0.20 5.14 3.37 44.60 0.15 5.29 16 6 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 7 C -0.11 -1.58 6.47 31.78 0.21 -1.37 16 8 C -0.12 -1.51 7.08 31.98 0.23 -1.29 16 9 C 0.09 1.89 6.69 86.85 0.58 2.47 16 10 N -0.61 -19.13 2.93 -792.19 -2.32 -21.46 16 11 C 0.53 22.11 7.57 87.66 0.66 22.77 16 12 O -0.58 -29.09 15.82 -3.03 -0.05 -29.14 16 13 C -0.11 -4.68 4.64 29.85 0.14 -4.54 16 14 C 0.01 0.58 3.33 29.85 0.10 0.68 16 15 C -0.53 -32.28 9.66 25.60 0.25 -32.04 16 16 H 0.05 3.25 7.99 -2.91 -0.02 3.23 16 17 C 0.02 1.14 5.47 84.65 0.46 1.60 16 18 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 19 Si 0.94 48.88 27.47 68.60 1.88 50.76 16 20 H -0.26 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.27 -14.45 6.54 99.48 0.65 -13.80 16 23 N -0.39 -13.96 11.83 -49.56 -0.59 -14.55 16 24 O 0.07 2.31 11.20 71.69 0.80 3.12 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.19 7.84 -2.39 -0.02 1.17 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.87 7.48 -2.39 -0.02 1.85 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 4.04 7.85 -2.39 -0.02 4.02 16 36 H 0.09 3.76 8.14 -2.38 -0.02 3.74 16 37 H 0.00 0.02 7.16 -2.39 -0.02 0.00 16 38 H 0.01 0.54 7.53 -2.39 -0.02 0.52 16 39 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -85.50 328.10 5.20 -80.30 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 0.98 Total: 2.82 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.19 Total: -11.83 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -2.61 Total: -96.03 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.75 Total: -26.02 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.88 Total: 50.76 kcal Total: -85.50 5.20 -80.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812460306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.931 kcal (2) G-P(sol) polarization free energy of solvation -85.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds