Wall clock time and date at job start Mon Mar 30 2020 23:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38229 * 119.99920 * 2 1 4 4 C 1.38240 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.99803 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00134 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47100 * 340.00069 * 6 5 4 8 8 O 1.42901 * 109.47344 * 220.00027 * 6 5 4 9 9 C 1.53004 * 109.47457 * 99.99856 * 6 5 4 10 10 N 1.46895 * 109.47035 * 185.00197 * 9 6 5 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 6 12 12 C 1.50703 * 109.47109 * 179.97438 * 11 10 9 13 13 O 1.21296 * 119.99996 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99848 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00405 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99358 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99517 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00588 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47149 * 89.99828 * 19 17 15 21 21 H 1.48498 * 109.47388 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.46930 * 330.00192 * 19 17 15 23 23 C 1.38242 * 120.00067 * 0.27612 * 5 4 3 24 24 C 1.38235 * 120.00055 * 359.51303 * 23 5 4 25 25 H 1.09003 * 109.46806 * 90.00251 * 1 2 3 26 26 H 1.09001 * 109.47181 * 209.99867 * 1 2 3 27 27 H 1.08994 * 109.47249 * 330.00032 * 1 2 3 28 28 H 1.08004 * 120.00338 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99649 * 179.97438 * 4 3 2 30 30 H 0.96703 * 113.99992 * 300.00142 * 8 6 5 31 31 H 1.08996 * 109.46863 * 65.00039 * 9 6 5 32 32 H 1.09002 * 109.46661 * 305.00216 * 9 6 5 33 33 H 1.00899 * 111.00672 * 56.04786 * 10 9 6 34 34 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 35 35 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 36 36 H 0.97002 * 119.99767 * 359.97438 * 14 12 11 37 37 H 0.96997 * 120.00211 * 180.02562 * 18 17 15 38 38 H 1.08002 * 119.99911 * 179.73224 * 23 5 4 39 39 H 1.07992 * 120.00024 * 180.27523 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1423 0.9656 -0.3489 8 8 6.2557 -1.0324 -0.8624 9 6 6.2877 -0.2498 1.4239 10 7 7.7516 -0.1311 1.4475 11 6 8.2769 -0.3647 2.7995 12 6 9.7783 -0.2356 2.7843 13 8 10.3541 0.0258 1.7492 14 7 10.4812 -0.4105 3.9208 15 6 11.8471 -0.2926 3.9071 16 1 12.3598 -0.0598 2.9855 17 6 12.5717 -0.4724 5.0790 18 7 13.8809 -0.3599 5.0658 19 14 11.6849 -0.8743 6.6732 20 1 11.5646 -2.3476 6.8149 21 1 12.4550 -0.3280 7.8193 22 1 10.3300 -0.2667 6.6526 23 6 3.5805 -1.1971 -0.0036 24 6 2.1982 -1.1972 0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 5.9702 -1.9209 -0.6092 31 1 5.9991 -1.2514 1.7423 32 1 5.8525 0.4860 2.1002 33 1 8.0475 0.7669 1.0952 34 1 7.8556 0.3705 3.4850 35 1 8.0021 -1.3671 3.1279 36 1 10.0207 -0.6192 4.7486 37 1 14.3868 -0.4858 5.8837 38 1 4.1206 -2.1324 -0.0072 39 1 1.6583 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819312314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:02 Heat of formation + Delta-G solvation = -61.106421 kcal Electronic energy + Delta-G solvation = -20423.048364 eV Core-core repulsion = 17137.354338 eV Total energy + Delta-G solvation = -3285.694026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03929 -38.48826 -37.43027 -34.90426 -33.82528 -33.13730 -31.64636 -31.21335 -29.63700 -27.38746 -25.40179 -23.64169 -23.10120 -22.26766 -20.89534 -19.36754 -18.35197 -17.59994 -16.41338 -16.13315 -15.52731 -15.46838 -15.26367 -14.82125 -14.30411 -14.29827 -14.13578 -13.71737 -13.64298 -13.36998 -13.09487 -12.67285 -12.53652 -12.43664 -12.14462 -11.89578 -11.82246 -11.66126 -11.35032 -11.14595 -11.08555 -10.58800 -10.14568 -9.95670 -9.55717 -9.21017 -8.81305 -8.55243 -8.17548 -8.11082 -6.29475 -3.80805 1.00016 1.11745 3.03087 3.07705 3.15595 3.40381 3.75843 3.98332 4.11476 4.40598 4.48949 4.51879 4.67855 4.71052 4.83953 4.94471 4.99489 5.12646 5.19133 5.22784 5.23866 5.36907 5.44273 5.51803 5.63091 5.68426 5.76654 5.81214 5.84057 5.94464 6.10866 6.28854 6.33681 6.70370 7.06171 7.51321 7.60004 7.65868 8.16402 8.61668 8.96822 9.44129 9.84820 10.83732 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.002767 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.988754 B =10115.139398 C =10509.361732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.105 4.105 5 C -0.117 4.117 6 C 0.152 3.848 7 H 0.106 0.894 8 O -0.538 6.538 9 C 0.033 3.967 10 N -0.660 5.660 11 C 0.048 3.952 12 C 0.450 3.550 13 O -0.562 6.562 14 N -0.592 5.592 15 C -0.304 4.304 16 H 0.120 0.880 17 C 0.040 3.960 18 N -0.882 5.882 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.106 4.106 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.370 0.630 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.351 0.649 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.122 0.878 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.769 -0.058 -5.618 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.124 4.124 5 C -0.118 4.118 6 C 0.092 3.908 7 H 0.124 0.876 8 O -0.343 6.343 9 C -0.097 4.097 10 N -0.292 5.292 11 C -0.085 4.085 12 C 0.236 3.764 13 O -0.443 6.443 14 N -0.231 5.231 15 C -0.433 4.433 16 H 0.137 0.863 17 C -0.163 4.163 18 N -0.522 5.522 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.124 4.124 24 C -0.136 4.136 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.218 0.782 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.171 0.829 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.766 -0.024 -6.714 27.595 hybrid contribution -1.090 0.048 2.274 2.522 sum -27.856 0.025 -4.440 28.208 Atomic orbital electron populations 1.20797 0.91233 1.02774 1.02330 1.19953 0.96100 0.93274 0.99672 1.21027 0.94097 0.97586 1.01035 1.21018 0.94222 0.97567 0.99550 1.20600 0.96652 0.93789 1.00761 1.20766 0.87103 0.93063 0.89841 0.87621 1.86688 1.76527 1.17707 1.53371 1.22669 0.89185 1.01707 0.96105 1.59985 1.07229 1.39965 1.22046 1.21722 0.94904 1.01688 0.90192 1.19697 0.87982 0.84173 0.84558 1.90578 1.70938 1.51698 1.31126 1.42208 1.07868 1.64480 1.08580 1.19440 0.79532 1.45567 0.98756 0.86265 1.25045 0.95456 0.97758 0.97992 1.69623 1.05078 1.48798 1.28688 0.86660 0.79524 0.79296 0.83818 1.19609 1.20209 1.19569 1.20900 0.94247 0.97549 0.99746 1.21000 0.94039 0.97582 1.01010 0.91170 0.91545 0.91561 0.86023 0.85815 0.78216 0.90671 0.94577 0.82885 0.93865 0.89548 0.79720 0.91635 0.85998 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.11 -0.98 9.67 -39.58 -0.38 -1.36 16 5 C -0.12 -1.16 4.97 -104.63 -0.52 -1.68 16 6 C 0.15 1.69 3.39 -27.88 -0.09 1.60 16 7 H 0.11 1.20 8.00 -51.93 -0.42 0.78 16 8 O -0.54 -6.84 13.13 -35.23 -0.46 -7.30 16 9 C 0.03 0.39 5.30 -3.82 -0.02 0.37 16 10 N -0.66 -10.48 6.07 -115.06 -0.70 -11.18 16 11 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 12 C 0.45 10.43 7.82 -10.98 -0.09 10.35 16 13 O -0.56 -15.47 15.78 5.54 0.09 -15.39 16 14 N -0.59 -14.31 5.09 -10.96 -0.06 -14.37 16 15 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 16 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 17 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 18 N -0.88 -26.00 13.96 55.50 0.77 -25.23 16 19 Si 0.88 19.52 27.74 -169.99 -4.71 14.80 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 23 C -0.11 -0.95 9.32 -39.58 -0.37 -1.32 16 24 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 29 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 30 H 0.37 3.49 7.50 45.56 0.34 3.84 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.12 0.88 6.78 -52.49 -0.36 0.52 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -34.55 333.30 -7.59 -42.14 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -4.77 Total: 15.02 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.77 Total: -3.52 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.02 Total: -50.77 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.38 Total: -22.69 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.55 -7.59 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819312314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.967 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds