Wall clock time and date at job start Mon Mar 30 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38229 * 119.99920 * 2 1 4 4 C 1.38240 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.99803 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00134 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47100 * 340.00069 * 6 5 4 8 8 O 1.42901 * 109.47344 * 220.00027 * 6 5 4 9 9 C 1.53004 * 109.47457 * 99.99856 * 6 5 4 10 10 N 1.46895 * 109.47035 * 185.00197 * 9 6 5 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 6 12 12 C 1.50703 * 109.47109 * 179.97438 * 11 10 9 13 13 O 1.21296 * 119.99996 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99848 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00405 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99358 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99517 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00588 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47149 * 89.99828 * 19 17 15 21 21 H 1.48498 * 109.47388 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.46930 * 330.00192 * 19 17 15 23 23 C 1.38242 * 120.00067 * 0.27612 * 5 4 3 24 24 C 1.38235 * 120.00055 * 359.51303 * 23 5 4 25 25 H 1.09003 * 109.46806 * 90.00251 * 1 2 3 26 26 H 1.09001 * 109.47181 * 209.99867 * 1 2 3 27 27 H 1.08994 * 109.47249 * 330.00032 * 1 2 3 28 28 H 1.08004 * 120.00338 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99649 * 179.97438 * 4 3 2 30 30 H 0.96703 * 113.99992 * 300.00142 * 8 6 5 31 31 H 1.08996 * 109.46863 * 65.00039 * 9 6 5 32 32 H 1.09002 * 109.46661 * 305.00216 * 9 6 5 33 33 H 1.00899 * 111.00672 * 56.04786 * 10 9 6 34 34 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 35 35 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 36 36 H 0.97002 * 119.99767 * 359.97438 * 14 12 11 37 37 H 0.96997 * 120.00211 * 180.02562 * 18 17 15 38 38 H 1.08002 * 119.99911 * 179.73224 * 23 5 4 39 39 H 1.07992 * 120.00024 * 180.27523 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1423 0.9656 -0.3489 8 8 6.2557 -1.0324 -0.8624 9 6 6.2877 -0.2498 1.4239 10 7 7.7516 -0.1311 1.4475 11 6 8.2769 -0.3647 2.7995 12 6 9.7783 -0.2356 2.7843 13 8 10.3541 0.0258 1.7492 14 7 10.4812 -0.4105 3.9208 15 6 11.8471 -0.2926 3.9071 16 1 12.3598 -0.0598 2.9855 17 6 12.5717 -0.4724 5.0790 18 7 13.8809 -0.3599 5.0658 19 14 11.6849 -0.8743 6.6732 20 1 11.5646 -2.3476 6.8149 21 1 12.4550 -0.3280 7.8193 22 1 10.3300 -0.2667 6.6526 23 6 3.5805 -1.1971 -0.0036 24 6 2.1982 -1.1972 0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 5.9702 -1.9209 -0.6092 31 1 5.9991 -1.2514 1.7423 32 1 5.8525 0.4860 2.1002 33 1 8.0475 0.7669 1.0952 34 1 7.8556 0.3705 3.4850 35 1 8.0021 -1.3671 3.1279 36 1 10.0207 -0.6192 4.7486 37 1 14.3868 -0.4858 5.8837 38 1 4.1206 -2.1324 -0.0072 39 1 1.6583 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819312314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:01 Heat of formation + Delta-G solvation = -88.923173 kcal Electronic energy + Delta-G solvation = -20424.254589 eV Core-core repulsion = 17137.354338 eV Total energy + Delta-G solvation = -3286.900251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75515 -40.26039 -38.35468 -36.31791 -35.67116 -33.81289 -33.73651 -31.82482 -30.63450 -28.51020 -26.75463 -25.05052 -23.81285 -23.13104 -21.62229 -21.27166 -20.28445 -18.48341 -17.74315 -17.35204 -16.86528 -16.46311 -16.28083 -16.10164 -15.47835 -15.34374 -15.09082 -14.89881 -14.65386 -14.39122 -14.35138 -14.23538 -13.86460 -13.34879 -13.07469 -13.02382 -12.90540 -12.74391 -12.46840 -12.41842 -12.03043 -11.98144 -11.78318 -11.52277 -11.03242 -10.44186 -10.25777 -9.83603 -9.43608 -9.32607 -8.41764 -6.03036 0.35602 0.49256 1.29832 1.35769 1.44625 1.94355 2.22887 2.62998 2.83050 3.14068 3.31862 3.61153 3.81582 3.90692 4.02299 4.10799 4.14659 4.15290 4.24535 4.41713 4.49172 4.51933 4.58486 4.67752 4.81175 4.84256 4.93313 4.95520 5.19496 5.27566 5.48398 5.51916 5.65848 5.70386 5.87925 6.01084 6.10248 6.31547 6.58980 6.85486 6.87206 7.38596 7.95578 8.75982 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.002767 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.988754 B =10115.139398 C =10509.361732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.129 4.129 6 C 0.157 3.843 7 H 0.096 0.904 8 O -0.562 6.562 9 C 0.040 3.960 10 N -0.681 5.681 11 C 0.062 3.938 12 C 0.447 3.553 13 O -0.615 6.615 14 N -0.590 5.590 15 C -0.330 4.330 16 H 0.054 0.946 17 C -0.017 4.017 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.231 1.231 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.382 0.618 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.343 0.657 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.135 0.865 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.548 -0.836 -3.563 31.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.130 4.130 6 C 0.098 3.902 7 H 0.114 0.886 8 O -0.369 6.369 9 C -0.089 4.089 10 N -0.313 5.313 11 C -0.070 4.070 12 C 0.235 3.765 13 O -0.499 6.499 14 N -0.232 5.232 15 C -0.459 4.459 16 H 0.072 0.928 17 C -0.215 4.215 18 N -0.575 5.575 19 Si 0.787 3.213 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.154 1.154 23 C -0.132 4.132 24 C -0.145 4.145 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.156 0.844 29 H 0.148 0.852 30 H 0.232 0.768 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -30.588 -0.812 -4.662 30.952 hybrid contribution 0.096 0.314 1.479 1.515 sum -30.493 -0.498 -3.183 30.662 Atomic orbital electron populations 1.20843 0.89533 1.03655 1.03009 1.20321 0.97507 0.93138 0.98640 1.21288 0.93928 0.98609 1.00879 1.21216 0.94881 0.97773 0.99751 1.20488 0.95671 0.94539 1.02328 1.20677 0.88080 0.92282 0.89211 0.88597 1.86649 1.77112 1.18857 1.54243 1.22699 0.86458 1.02874 0.96826 1.59993 1.09937 1.39738 1.21637 1.21645 0.89365 1.04306 0.91680 1.21000 0.90809 0.81439 0.83219 1.90556 1.72909 1.53347 1.33100 1.42025 1.06154 1.65044 1.10003 1.19010 0.81912 1.47809 0.97183 0.92802 1.26159 0.96245 0.96473 1.02664 1.69809 1.07532 1.49655 1.30501 0.85329 0.79642 0.79841 0.76467 1.18104 1.19968 1.15404 1.21127 0.94806 0.97793 0.99499 1.21291 0.93972 0.98549 1.00691 0.90493 0.90637 0.90771 0.84440 0.85185 0.76821 0.89330 0.93095 0.83840 0.90539 0.86715 0.77409 0.91110 0.84680 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.10 -1.36 5.88 -19.86 -0.12 -1.47 16 3 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 4 C -0.12 -2.03 9.67 22.27 0.22 -1.82 16 5 C -0.13 -2.38 4.97 -19.87 -0.10 -2.48 16 6 C 0.16 3.34 3.39 29.85 0.10 3.44 16 7 H 0.10 2.17 8.00 -2.39 -0.02 2.15 16 8 O -0.56 -13.93 13.13 -148.98 -1.96 -15.88 16 9 C 0.04 0.86 5.30 86.31 0.46 1.32 16 10 N -0.68 -20.65 6.07 -517.92 -3.15 -23.79 16 11 C 0.06 1.93 6.17 85.56 0.53 2.45 16 12 C 0.45 20.66 7.82 87.66 0.69 21.34 16 13 O -0.61 -35.18 15.78 -3.08 -0.05 -35.23 16 14 N -0.59 -28.25 5.09 -306.98 -1.56 -29.82 16 15 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 16 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 17 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 18 N -0.93 -56.90 13.96 21.66 0.30 -56.60 16 19 Si 0.97 38.93 27.74 68.60 1.90 40.84 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 23 C -0.11 -1.83 9.32 22.27 0.21 -1.63 16 24 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 25 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 27 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 28 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.13 1.94 8.04 -2.91 -0.02 1.91 16 30 H 0.38 6.80 7.50 -74.06 -0.56 6.25 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.34 11.30 8.43 -89.69 -0.76 10.54 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 36 H 0.39 15.32 5.76 -92.71 -0.53 14.78 16 37 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.14 1.67 6.78 -2.91 -0.02 1.65 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -80.04 333.30 -0.88 -80.92 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -0.82 Total: 41.30 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 4.45 Total: -1.73 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.41 Total: -110.21 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -2.01 Total: -51.11 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.84 kcal Total: -80.04 -0.88 -80.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819312314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.999 kcal (2) G-P(sol) polarization free energy of solvation -80.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds