Wall clock time and date at job start Mon Mar 30 2020 23:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38231 * 119.99822 * 2 1 4 4 C 1.38235 * 120.00055 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00105 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47358 * 24.99754 * 6 5 4 8 8 O 1.42895 * 109.47044 * 145.00468 * 6 5 4 9 9 C 1.53006 * 109.46866 * 265.00159 * 6 5 4 10 10 N 1.46902 * 109.46626 * 179.97438 * 9 6 5 11 11 C 1.46905 * 110.99800 * 180.02562 * 10 9 6 12 12 C 1.50698 * 109.47194 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99728 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00071 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99830 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00246 * 179.97438 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46821 * 90.00243 * 19 17 15 21 21 H 1.48502 * 109.47451 * 209.99908 * 19 17 15 22 22 H 1.48501 * 109.47204 * 330.00280 * 19 17 15 23 23 C 1.38236 * 119.99853 * 0.25755 * 5 4 3 24 24 C 1.38230 * 120.00089 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46867 * 89.99490 * 1 2 3 26 26 H 1.08995 * 109.46872 * 209.99641 * 1 2 3 27 27 H 1.09005 * 109.46880 * 329.99459 * 1 2 3 28 28 H 1.08002 * 120.00248 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00046 * 179.97438 * 4 3 2 30 30 H 0.96695 * 114.00385 * 60.00268 * 8 6 5 31 31 H 1.08993 * 109.46955 * 300.00219 * 9 6 5 32 32 H 1.09000 * 109.47050 * 60.00048 * 9 6 5 33 33 H 1.00898 * 110.99915 * 56.05185 * 10 9 6 34 34 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 35 35 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 36 36 H 0.96999 * 120.00108 * 0.02562 * 14 12 11 37 37 H 0.96994 * 120.00398 * 179.97438 * 18 17 15 38 38 H 1.07999 * 119.99914 * 179.72820 * 23 5 4 39 39 H 1.08010 * 119.99928 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1424 0.9316 0.4319 8 8 6.2556 -1.1033 0.7711 9 6 6.2876 -0.1263 -1.4391 10 7 7.7566 -0.1257 -1.4403 11 6 8.2820 -0.2452 -2.8069 12 6 9.7885 -0.2416 -2.7681 13 8 10.3675 -0.1492 -1.7063 14 7 10.4923 -0.3412 -3.9131 15 6 11.8629 -0.3385 -3.8777 16 1 12.3785 -0.2562 -2.9323 17 6 12.5885 -0.4417 -5.0581 18 7 11.9612 -0.5424 -6.2085 19 14 14.4559 -0.4374 -5.0099 20 1 14.9508 -1.8310 -4.8753 21 1 14.9822 0.1556 -6.2657 22 1 14.9193 0.3667 -3.8506 23 6 3.5806 -1.1971 -0.0054 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.9701 -1.9666 0.4421 31 1 5.9239 -1.0578 -1.8727 32 1 5.9238 0.7153 -2.0286 33 1 8.1189 -0.8578 -0.8480 34 1 7.9325 -1.1776 -3.2503 35 1 7.9317 0.5956 -3.4056 36 1 10.0293 -0.4147 -4.7622 37 1 12.4677 -0.6140 -7.0325 38 1 4.1206 -2.1324 -0.0098 39 1 1.6582 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819312316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:05 Heat of formation + Delta-G solvation = -69.861535 kcal Electronic energy + Delta-G solvation = -20381.377828 eV Core-core repulsion = 17095.304152 eV Total energy + Delta-G solvation = -3286.073676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01976 -38.32089 -37.45246 -34.76270 -33.75572 -33.13931 -31.21336 -31.16295 -29.57104 -27.26494 -25.35866 -23.79982 -23.00116 -22.19998 -20.84664 -19.23616 -17.87966 -17.62683 -16.44373 -16.14234 -15.47552 -15.45019 -15.16985 -14.49111 -14.35053 -14.18723 -14.11423 -13.75243 -13.66354 -13.44352 -13.03075 -12.62298 -12.42364 -12.38161 -11.85497 -11.77121 -11.52213 -11.49571 -11.28872 -11.07868 -10.99569 -10.37660 -10.24453 -10.17644 -9.48931 -9.16960 -8.76372 -8.42305 -8.04289 -7.93753 -6.39783 -3.80510 1.04331 1.15990 3.19504 3.27907 3.34302 3.44602 3.93032 4.04431 4.25185 4.35024 4.53390 4.58341 4.74888 4.81816 4.95532 5.01950 5.10341 5.20421 5.25553 5.25937 5.30811 5.42585 5.47227 5.66515 5.69928 5.80610 5.81344 5.91829 5.99126 6.14925 6.28104 6.32870 6.38667 6.74635 7.19797 7.48973 7.57288 7.72714 8.08618 8.63617 9.20049 9.56459 10.08232 10.78071 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046291 B = 0.002561 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.723259 B =10929.740325 C =11160.323814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.104 4.104 5 C -0.116 4.116 6 C 0.150 3.850 7 H 0.117 0.883 8 O -0.549 6.549 9 C 0.034 3.966 10 N -0.665 5.665 11 C 0.050 3.950 12 C 0.441 3.559 13 O -0.581 6.581 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.931 3.069 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.108 4.108 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.369 0.631 31 H 0.029 0.971 32 H 0.080 0.920 33 H 0.356 0.644 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.120 0.880 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.780 -0.430 8.165 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.122 4.122 5 C -0.117 4.117 6 C 0.090 3.910 7 H 0.135 0.865 8 O -0.354 6.354 9 C -0.096 4.096 10 N -0.298 5.298 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.465 6.465 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.126 4.126 24 C -0.136 4.136 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.216 0.784 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.177 0.823 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.966 0.779 9.044 23.768 hybrid contribution 0.117 -1.384 -1.306 1.907 sum -21.849 -0.605 7.739 23.187 Atomic orbital electron populations 1.20795 0.91250 1.02732 1.02330 1.19947 0.96085 0.93278 0.99752 1.21032 0.94113 0.97568 1.00979 1.21026 0.94177 0.97657 0.99343 1.20586 0.96606 0.93792 1.00688 1.20903 0.87225 0.91577 0.91275 0.86506 1.86697 1.76438 1.16455 1.55775 1.22619 0.89666 1.00991 0.96292 1.59989 1.04545 1.55228 1.10063 1.21685 0.95209 1.00709 0.90625 1.19799 0.88059 0.84428 0.85064 1.90533 1.71091 1.54946 1.29897 1.41864 1.07035 1.64082 1.07181 1.19713 0.81078 1.47043 0.94947 0.87904 1.25267 1.00737 0.97372 0.94661 1.69614 1.36588 1.50369 0.97876 0.85848 0.82192 0.78483 0.77709 1.20436 1.20942 1.19385 1.20868 0.94261 0.97486 1.00009 1.20982 0.94003 0.97571 1.01090 0.91164 0.91596 0.91563 0.85990 0.85599 0.78388 0.95284 0.90120 0.82350 0.93991 0.89655 0.77480 0.91904 0.86213 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.09 -0.77 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.10 -1.01 9.68 -39.58 -0.38 -1.39 16 5 C -0.12 -1.20 5.00 -104.62 -0.52 -1.73 16 6 C 0.15 1.75 3.48 -27.88 -0.10 1.65 16 7 H 0.12 1.47 8.05 -51.93 -0.42 1.05 16 8 O -0.55 -6.74 12.47 -35.23 -0.44 -7.18 16 9 C 0.03 0.43 5.37 -3.82 -0.02 0.41 16 10 N -0.66 -11.20 6.13 -115.05 -0.70 -11.90 16 11 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 12 C 0.44 10.70 7.82 -10.99 -0.09 10.61 16 13 O -0.58 -16.26 15.78 5.55 0.09 -16.17 16 14 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 15 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 16 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 19 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.11 -1.02 9.33 -39.58 -0.37 -1.39 16 24 C -0.12 -1.03 9.70 -39.59 -0.38 -1.42 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.37 3.26 7.40 45.56 0.34 3.59 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.36 6.36 7.82 -39.29 -0.31 6.05 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 37 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.12 0.91 6.62 -52.49 -0.35 0.56 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -33.02 335.23 -7.93 -40.95 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -4.79 Total: 15.37 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.77 Total: -3.64 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.04 Total: -50.67 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.35 Total: -23.35 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.02 -7.93 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819312316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.915 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds