Wall clock time and date at job start Mon Mar 30 2020 23:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38231 * 119.99822 * 2 1 4 4 C 1.38235 * 120.00055 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00105 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47358 * 24.99754 * 6 5 4 8 8 O 1.42895 * 109.47044 * 145.00468 * 6 5 4 9 9 C 1.53006 * 109.46866 * 265.00159 * 6 5 4 10 10 N 1.46902 * 109.46626 * 179.97438 * 9 6 5 11 11 C 1.46905 * 110.99800 * 180.02562 * 10 9 6 12 12 C 1.50698 * 109.47194 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99728 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00071 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99830 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00246 * 179.97438 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46821 * 90.00243 * 19 17 15 21 21 H 1.48502 * 109.47451 * 209.99908 * 19 17 15 22 22 H 1.48501 * 109.47204 * 330.00280 * 19 17 15 23 23 C 1.38236 * 119.99853 * 0.25755 * 5 4 3 24 24 C 1.38230 * 120.00089 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46867 * 89.99490 * 1 2 3 26 26 H 1.08995 * 109.46872 * 209.99641 * 1 2 3 27 27 H 1.09005 * 109.46880 * 329.99459 * 1 2 3 28 28 H 1.08002 * 120.00248 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00046 * 179.97438 * 4 3 2 30 30 H 0.96695 * 114.00385 * 60.00268 * 8 6 5 31 31 H 1.08993 * 109.46955 * 300.00219 * 9 6 5 32 32 H 1.09000 * 109.47050 * 60.00048 * 9 6 5 33 33 H 1.00898 * 110.99915 * 56.05185 * 10 9 6 34 34 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 35 35 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 36 36 H 0.96999 * 120.00108 * 0.02562 * 14 12 11 37 37 H 0.96994 * 120.00398 * 179.97438 * 18 17 15 38 38 H 1.07999 * 119.99914 * 179.72820 * 23 5 4 39 39 H 1.08010 * 119.99928 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 1 6.1424 0.9316 0.4319 8 8 6.2556 -1.1033 0.7711 9 6 6.2876 -0.1263 -1.4391 10 7 7.7566 -0.1257 -1.4403 11 6 8.2820 -0.2452 -2.8069 12 6 9.7885 -0.2416 -2.7681 13 8 10.3675 -0.1492 -1.7063 14 7 10.4923 -0.3412 -3.9131 15 6 11.8629 -0.3385 -3.8777 16 1 12.3785 -0.2562 -2.9323 17 6 12.5885 -0.4417 -5.0581 18 7 11.9612 -0.5424 -6.2085 19 14 14.4559 -0.4374 -5.0099 20 1 14.9508 -1.8310 -4.8753 21 1 14.9822 0.1556 -6.2657 22 1 14.9193 0.3667 -3.8506 23 6 3.5806 -1.1971 -0.0054 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.9701 -1.9666 0.4421 31 1 5.9239 -1.0578 -1.8727 32 1 5.9238 0.7153 -2.0286 33 1 8.1189 -0.8578 -0.8480 34 1 7.9325 -1.1776 -3.2503 35 1 7.9317 0.5956 -3.4056 36 1 10.0293 -0.4147 -4.7622 37 1 12.4677 -0.6140 -7.0325 38 1 4.1206 -2.1324 -0.0098 39 1 1.6582 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819312316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:04 Heat of formation + Delta-G solvation = -94.819389 kcal Electronic energy + Delta-G solvation = -20382.460081 eV Core-core repulsion = 17095.304152 eV Total energy + Delta-G solvation = -3287.155930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77898 -40.12822 -38.44226 -36.26702 -35.60286 -33.83606 -33.27517 -31.82802 -30.60146 -28.44347 -26.80616 -25.23327 -23.72383 -23.15103 -21.61615 -21.08162 -19.92915 -18.53552 -17.83241 -17.29800 -16.88980 -16.37645 -16.19233 -16.12046 -15.77796 -15.39278 -15.03395 -14.94024 -14.61019 -14.29228 -14.28002 -14.08220 -13.48910 -13.30917 -13.06745 -12.97106 -12.90264 -12.74225 -12.48600 -12.42879 -12.12450 -12.04041 -11.80202 -11.51971 -11.13005 -10.36314 -10.02959 -9.84019 -9.43857 -9.35578 -8.47626 -5.96613 0.35371 0.49078 1.37695 1.41500 1.54628 2.03370 2.28525 2.70629 2.93107 3.19286 3.44699 3.51677 3.84541 3.89801 4.01162 4.12320 4.15325 4.20013 4.30254 4.44945 4.49953 4.54319 4.57827 4.70064 4.81669 4.84572 4.91374 4.97586 5.19491 5.27575 5.40064 5.48309 5.65592 5.70155 5.84701 6.06935 6.10095 6.36868 6.58920 6.74021 7.11410 7.54461 8.10091 8.69807 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046291 B = 0.002561 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.723259 B =10929.740325 C =11160.323814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.158 3.842 7 H 0.101 0.899 8 O -0.566 6.566 9 C 0.040 3.960 10 N -0.681 5.681 11 C 0.065 3.935 12 C 0.437 3.563 13 O -0.624 6.624 14 N -0.572 5.572 15 C -0.335 4.335 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.274 1.274 23 C -0.116 4.116 24 C -0.127 4.127 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.383 0.617 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.348 0.652 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.134 0.866 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.217 -0.796 7.615 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.130 4.130 6 C 0.099 3.901 7 H 0.119 0.881 8 O -0.373 6.373 9 C -0.089 4.089 10 N -0.314 5.314 11 C -0.068 4.068 12 C 0.224 3.776 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.818 3.182 20 H -0.195 1.195 21 H -0.194 1.194 22 H -0.199 1.199 23 C -0.134 4.134 24 C -0.145 4.145 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.232 0.768 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.444 0.406 8.469 24.930 hybrid contribution 0.476 -1.275 -1.103 1.752 sum -22.968 -0.869 7.366 24.136 Atomic orbital electron populations 1.20842 0.89466 1.03638 1.03057 1.20324 0.97544 0.93108 0.98633 1.21295 0.93881 0.98641 1.00776 1.21214 0.94890 0.97797 0.99601 1.20474 0.95588 0.94590 1.02359 1.20708 0.88226 0.90868 0.90319 0.88071 1.86657 1.76907 1.17476 1.56294 1.22661 0.86881 1.02046 0.97308 1.59976 1.07161 1.55227 1.09073 1.21550 0.90402 1.02749 0.92050 1.20874 0.90629 0.82257 0.83834 1.90500 1.72793 1.56385 1.31325 1.41928 1.06520 1.64589 1.07943 1.19671 0.82578 1.49569 0.94599 0.90387 1.26062 1.05091 0.96211 0.93969 1.69670 1.38251 1.49874 0.98311 0.84911 0.76674 0.78742 0.77902 1.19524 1.19434 1.19860 1.21103 0.94859 0.97717 0.99743 1.21281 0.93915 0.98582 1.00747 0.90409 0.90681 0.90744 0.84335 0.85133 0.76775 0.93604 0.89465 0.83255 0.91486 0.87755 0.76918 0.91245 0.84819 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.10 -1.45 5.88 -19.87 -0.12 -1.57 16 3 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 4 C -0.12 -2.18 9.68 22.27 0.22 -1.96 16 5 C -0.13 -2.56 5.00 -19.86 -0.10 -2.66 16 6 C 0.16 3.61 3.48 29.85 0.10 3.71 16 7 H 0.10 2.58 8.05 -2.39 -0.02 2.56 16 8 O -0.57 -13.66 12.47 -148.98 -1.86 -15.51 16 9 C 0.04 0.96 5.37 86.31 0.46 1.42 16 10 N -0.68 -22.52 6.13 -517.91 -3.17 -25.69 16 11 C 0.06 2.28 6.17 85.56 0.53 2.81 16 12 C 0.44 21.40 7.82 87.66 0.69 22.08 16 13 O -0.62 -35.84 15.78 -3.06 -0.05 -35.88 16 14 N -0.57 -29.97 5.29 -306.99 -1.62 -31.59 16 15 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 17 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 18 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 19 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C -0.12 -2.00 9.33 22.27 0.21 -1.80 16 24 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 27 H 0.07 0.59 8.09 -2.38 -0.02 0.58 16 28 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.38 6.39 7.40 -74.06 -0.55 5.84 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.35 12.42 7.82 -89.70 -0.70 11.72 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 37 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 38 H 0.13 1.79 6.62 -2.91 -0.02 1.77 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -71.10 335.23 -0.88 -71.98 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -0.90 Total: 41.77 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 4.41 Total: -0.74 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.51 Total: -107.06 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -1.91 Total: -51.40 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.10 -0.88 -71.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819312316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.841 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds