Wall clock time and date at job start Mon Mar 30 2020 23:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00259 * 2 1 4 4 O 1.21284 * 119.99424 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00061 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46773 * 180.02562 * 5 3 2 7 7 C 1.36008 * 116.99724 * 180.02562 * 6 5 3 8 8 C 1.38721 * 119.97647 * 359.97438 * 7 6 5 9 9 C 1.38090 * 120.01375 * 180.02562 * 8 7 6 10 10 C 1.38884 * 119.98253 * 359.97438 * 9 8 7 11 11 N 1.39945 * 120.01763 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.00082 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38837 * 119.96327 * 0.28296 * 10 9 8 22 22 C 1.50697 * 120.01374 * 179.71826 * 21 10 9 23 23 C 1.38135 * 119.97437 * 359.44229 * 21 10 9 24 24 H 1.09001 * 109.46875 * 300.00094 * 1 2 3 25 25 H 1.09003 * 109.47268 * 59.99562 * 1 2 3 26 26 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 27 27 H 0.96998 * 119.99614 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47139 * 60.00453 * 5 3 2 29 29 H 1.08998 * 109.46865 * 300.00181 * 5 3 2 30 30 H 1.07998 * 119.99920 * 0.02562 * 8 7 6 31 31 H 1.08006 * 120.00746 * 179.97438 * 9 8 7 32 32 H 0.97000 * 119.99498 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47391 * 59.99481 * 12 11 10 34 34 H 1.09001 * 109.46813 * 299.99538 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.46742 * 89.99493 * 22 21 10 37 37 H 1.08991 * 109.47341 * 209.99683 * 22 21 10 38 38 H 1.09000 * 109.46706 * 330.00523 * 22 21 10 39 39 H 1.08004 * 119.98699 * 180.25663 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 8 4.1222 2.5144 0.0001 7 6 5.4706 2.6926 -0.0008 8 6 6.3151 1.5921 -0.0019 9 6 7.6843 1.7721 -0.0023 10 6 8.2156 3.0553 -0.0022 11 7 9.6030 3.2386 -0.0032 12 6 10.4953 2.0768 -0.0048 13 6 11.9281 2.5439 -0.0063 14 1 12.1516 3.6005 -0.0055 15 6 12.9536 1.6222 -0.0074 16 7 12.6814 0.3356 -0.0078 17 14 14.7296 2.2013 -0.0084 18 1 15.2013 2.3540 1.3913 19 1 15.5756 1.2022 -0.7096 20 1 14.8240 3.5077 -0.7079 21 6 7.3695 4.1561 0.0043 22 6 7.9448 5.5489 0.0108 23 6 6.0002 3.9742 -0.0011 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9499 -0.8401 -0.0004 28 1 4.0089 0.6535 -0.8909 29 1 4.0095 0.6530 0.8891 30 1 5.9019 0.5943 -0.0023 31 1 8.3417 0.9152 -0.0027 32 1 9.9737 4.1350 -0.0035 33 1 10.3084 1.4763 -0.8951 34 1 10.3099 1.4750 0.8849 35 1 13.4029 -0.3127 -0.0090 36 1 8.0826 5.8899 -1.0154 37 1 7.2615 6.2219 0.5286 38 1 8.9067 5.5423 0.5235 39 1 5.3419 4.8304 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819485239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:21 Heat of formation + Delta-G solvation = -51.318623 kcal Electronic energy + Delta-G solvation = -20524.153410 eV Core-core repulsion = 17238.883815 eV Total energy + Delta-G solvation = -3285.269595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24176 -39.35179 -37.63565 -34.88970 -34.51174 -32.54345 -32.08990 -30.04682 -28.41934 -27.02346 -25.91252 -25.62694 -23.12266 -21.34270 -20.72090 -20.39891 -18.01262 -17.44113 -17.04055 -16.39666 -16.01790 -15.60943 -15.48475 -14.83146 -14.65310 -14.11903 -13.84856 -13.69503 -13.28115 -13.08266 -12.69569 -12.68422 -12.61264 -12.55837 -12.05166 -11.89105 -11.82608 -11.48753 -11.06725 -10.88858 -10.66570 -10.48332 -10.16698 -9.99362 -9.49482 -9.40583 -9.05211 -8.48625 -8.34669 -6.32967 -6.23230 -4.28043 1.77914 2.16907 2.35224 2.51629 3.21192 3.27671 3.30454 3.74531 4.24116 4.30479 4.44040 4.59703 4.87327 4.90542 4.95190 5.14226 5.16624 5.22401 5.33972 5.44097 5.52858 5.66871 5.85448 5.95429 6.00321 6.11865 6.21799 6.49593 6.62015 6.85967 6.92846 7.01990 7.08304 7.22233 7.41482 7.59069 7.76816 7.92270 7.93850 8.29821 8.66991 8.90118 9.38485 10.87457 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.002949 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.434704 B = 9492.105596 C =10347.486056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.736 5.736 3 C 0.515 3.485 4 O -0.516 6.516 5 C 0.046 3.954 6 O -0.299 6.299 7 C 0.041 3.959 8 C -0.157 4.157 9 C -0.164 4.164 10 C 0.208 3.792 11 N -0.731 5.731 12 C 0.252 3.748 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.148 4.148 22 C -0.101 4.101 23 C -0.094 4.094 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.404 0.596 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.391 0.609 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 -1.564 0.012 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.391 5.391 3 C 0.300 3.700 4 O -0.390 6.390 5 C -0.034 4.034 6 O -0.212 6.212 7 C -0.005 4.005 8 C -0.176 4.176 9 C -0.187 4.187 10 C 0.100 3.900 11 N -0.357 5.357 12 C 0.130 3.870 13 C -0.576 4.576 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.113 4.113 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.237 0.763 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.226 0.774 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.775 -0.998 0.010 18.802 hybrid contribution 1.461 -0.373 0.005 1.508 sum -17.314 -1.371 0.014 17.368 Atomic orbital electron populations 1.21541 0.79019 1.02339 1.02527 1.45638 1.07932 1.08433 1.77073 1.20303 0.89366 0.83982 0.76357 1.90745 1.70015 1.31130 1.47137 1.22255 0.91514 0.86010 1.03599 1.86075 1.19948 1.24554 1.90673 1.18527 0.80857 0.94229 1.06866 1.20863 0.93783 0.96983 1.05997 1.20525 0.94280 0.96195 1.07729 1.17835 0.85202 0.92774 0.94200 1.45547 1.01296 1.10327 1.78497 1.19077 0.87676 0.83771 0.96427 1.21202 0.90419 0.93396 1.52613 0.92018 1.24928 0.99662 0.94731 0.94675 1.69941 1.32924 1.00481 1.49409 0.86414 0.83714 0.78560 0.78259 1.20445 1.20986 1.19743 1.19095 0.91988 0.94550 1.09664 1.20544 1.00697 0.92810 1.01742 1.19853 0.93593 0.94315 1.03559 0.92099 0.92108 0.90431 0.76251 0.89348 0.89352 0.86415 0.85352 0.77412 0.96293 0.96321 0.92484 0.91810 0.91910 0.91882 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.74 -5.41 5.71 -67.08 -0.38 -5.79 16 3 C 0.51 6.02 7.91 -10.99 -0.09 5.93 16 4 O -0.52 -8.48 16.50 -14.35 -0.24 -8.72 16 5 C 0.05 0.50 5.22 36.01 0.19 0.69 16 6 O -0.30 -4.69 9.67 -39.67 -0.38 -5.08 16 7 C 0.04 0.67 6.69 -39.24 -0.26 0.40 16 8 C -0.16 -2.49 9.03 -39.46 -0.36 -2.84 16 9 C -0.16 -3.05 9.31 -39.40 -0.37 -3.41 16 10 C 0.21 4.02 6.64 -83.69 -0.56 3.46 16 11 N -0.73 -15.42 5.63 -59.76 -0.34 -15.75 16 12 C 0.25 6.31 4.67 -5.19 -0.02 6.28 16 13 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 17 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.15 -2.51 5.90 -104.44 -0.62 -3.13 16 22 C -0.10 -1.43 9.57 36.00 0.34 -1.08 16 23 C -0.09 -1.55 9.63 -39.46 -0.38 -1.93 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.40 1.60 8.83 -40.82 -0.36 1.24 16 28 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 29 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 30 H 0.12 1.48 6.29 -52.49 -0.33 1.15 16 31 H 0.13 2.50 6.73 -52.48 -0.35 2.14 16 32 H 0.39 7.71 6.32 -40.82 -0.26 7.45 16 33 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 34 H 0.02 0.51 7.95 -51.93 -0.41 0.09 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 39 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -33.13 332.20 -7.84 -40.97 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.33 Total: 5.78 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.89 Total: -7.55 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.02 Total: -46.08 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.62 Total: -13.80 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.13 -7.84 -40.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819485239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.346 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds