Wall clock time and date at job start Mon Mar 30 2020 23:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00259 * 2 1 4 4 O 1.21284 * 119.99424 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00061 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46773 * 180.02562 * 5 3 2 7 7 C 1.36008 * 116.99724 * 180.02562 * 6 5 3 8 8 C 1.38721 * 119.97647 * 359.97438 * 7 6 5 9 9 C 1.38090 * 120.01375 * 180.02562 * 8 7 6 10 10 C 1.38884 * 119.98253 * 359.97438 * 9 8 7 11 11 N 1.39945 * 120.01763 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.00082 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38837 * 119.96327 * 0.28296 * 10 9 8 22 22 C 1.50697 * 120.01374 * 179.71826 * 21 10 9 23 23 C 1.38135 * 119.97437 * 359.44229 * 21 10 9 24 24 H 1.09001 * 109.46875 * 300.00094 * 1 2 3 25 25 H 1.09003 * 109.47268 * 59.99562 * 1 2 3 26 26 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 27 27 H 0.96998 * 119.99614 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47139 * 60.00453 * 5 3 2 29 29 H 1.08998 * 109.46865 * 300.00181 * 5 3 2 30 30 H 1.07998 * 119.99920 * 0.02562 * 8 7 6 31 31 H 1.08006 * 120.00746 * 179.97438 * 9 8 7 32 32 H 0.97000 * 119.99498 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47391 * 59.99481 * 12 11 10 34 34 H 1.09001 * 109.46813 * 299.99538 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.46742 * 89.99493 * 22 21 10 37 37 H 1.08991 * 109.47341 * 209.99683 * 22 21 10 38 38 H 1.09000 * 109.46706 * 330.00523 * 22 21 10 39 39 H 1.08004 * 119.98699 * 180.25663 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 8 4.1222 2.5144 0.0001 7 6 5.4706 2.6926 -0.0008 8 6 6.3151 1.5921 -0.0019 9 6 7.6843 1.7721 -0.0023 10 6 8.2156 3.0553 -0.0022 11 7 9.6030 3.2386 -0.0032 12 6 10.4953 2.0768 -0.0048 13 6 11.9281 2.5439 -0.0063 14 1 12.1516 3.6005 -0.0055 15 6 12.9536 1.6222 -0.0074 16 7 12.6814 0.3356 -0.0078 17 14 14.7296 2.2013 -0.0084 18 1 15.2013 2.3540 1.3913 19 1 15.5756 1.2022 -0.7096 20 1 14.8240 3.5077 -0.7079 21 6 7.3695 4.1561 0.0043 22 6 7.9448 5.5489 0.0108 23 6 6.0002 3.9742 -0.0011 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9499 -0.8401 -0.0004 28 1 4.0089 0.6535 -0.8909 29 1 4.0095 0.6530 0.8891 30 1 5.9019 0.5943 -0.0023 31 1 8.3417 0.9152 -0.0027 32 1 9.9737 4.1350 -0.0035 33 1 10.3084 1.4763 -0.8951 34 1 10.3099 1.4750 0.8849 35 1 13.4029 -0.3127 -0.0090 36 1 8.0826 5.8899 -1.0154 37 1 7.2615 6.2219 0.5286 38 1 8.9067 5.5423 0.5235 39 1 5.3419 4.8304 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819485239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:20 Heat of formation + Delta-G solvation = -74.166273 kcal Electronic energy + Delta-G solvation = -20525.144159 eV Core-core repulsion = 17238.883815 eV Total energy + Delta-G solvation = -3286.260344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34467 -40.47809 -38.90554 -36.22138 -35.67284 -34.40006 -33.41363 -31.16225 -29.81733 -28.39577 -27.26198 -26.57201 -24.93307 -22.56052 -22.10494 -21.46326 -19.25525 -18.80929 -18.27784 -17.43972 -17.33628 -17.03685 -16.75475 -16.27808 -15.75931 -15.37760 -15.13870 -15.09917 -14.59890 -14.22087 -14.07494 -13.98786 -13.88894 -13.85587 -13.14291 -13.06369 -12.97966 -12.88295 -12.77098 -12.55315 -12.20478 -12.03486 -11.66198 -11.39911 -11.00659 -10.81489 -10.26688 -10.19380 -9.66878 -8.29838 -7.84449 -6.42835 0.44608 0.79255 1.41709 1.42603 1.46658 1.53750 1.67482 2.34941 2.79700 2.93461 2.98010 3.05821 3.67877 3.97541 4.01217 4.12655 4.16629 4.31499 4.43558 4.49856 4.58457 4.62183 4.77383 4.86292 4.95157 5.01982 5.05385 5.17297 5.33600 5.34292 5.37257 5.50308 5.53459 5.60060 5.79950 5.92658 6.38744 6.49318 6.59682 6.79519 7.15402 7.19754 7.31622 8.81927 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.002949 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.434704 B = 9492.105596 C =10347.486056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.716 5.716 3 C 0.512 3.488 4 O -0.574 6.574 5 C 0.036 3.964 6 O -0.318 6.318 7 C 0.051 3.949 8 C -0.152 4.152 9 C -0.181 4.181 10 C 0.176 3.824 11 N -0.737 5.737 12 C 0.274 3.726 13 C -0.557 4.557 14 H 0.069 0.931 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.976 3.024 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.105 4.105 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.423 0.577 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.153 0.847 31 H 0.109 0.891 32 H 0.396 0.604 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.269 0.731 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.095 -1.594 0.008 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.370 5.370 3 C 0.298 3.702 4 O -0.452 6.452 5 C -0.042 4.042 6 O -0.232 6.232 7 C 0.006 3.994 8 C -0.171 4.171 9 C -0.204 4.204 10 C 0.071 3.929 11 N -0.366 5.366 12 C 0.151 3.849 13 C -0.595 4.595 14 H 0.087 0.913 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.145 4.145 22 C -0.158 4.158 23 C -0.124 4.124 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.260 0.740 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.170 0.830 31 H 0.127 0.873 32 H 0.232 0.768 33 H 0.009 0.991 34 H 0.008 0.992 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.488 -1.072 0.006 19.517 hybrid contribution 1.428 -0.450 0.007 1.497 sum -18.060 -1.522 0.013 18.124 Atomic orbital electron populations 1.21720 0.78067 1.04614 1.01530 1.45549 1.08589 1.08081 1.74778 1.20504 0.89641 0.84263 0.75771 1.90725 1.70983 1.33247 1.50293 1.22625 0.91222 0.84318 1.06056 1.86062 1.19152 1.27589 1.90434 1.18662 0.81448 0.94301 1.05031 1.21085 0.92405 0.98746 1.04906 1.20572 0.95458 0.95536 1.08854 1.18106 0.84568 0.93985 0.96260 1.45177 1.01760 1.09165 1.80483 1.18526 0.88110 0.84544 0.93737 1.21590 0.91391 0.93929 1.52552 0.91286 1.25888 1.04345 0.94763 0.94034 1.70067 1.34432 1.01731 1.50195 0.85289 0.77907 0.78333 0.78522 1.19724 1.20581 1.18728 1.19369 0.92022 0.95214 1.07915 1.20614 1.00901 0.91544 1.02717 1.20145 0.93565 0.95288 1.03396 0.93144 0.93151 0.86480 0.73957 0.86735 0.86741 0.82992 0.87292 0.76807 0.99125 0.99157 0.92235 0.90734 0.89665 0.92242 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.70 127.77 1.37 2.24 16 2 N -0.72 -8.75 5.71 -484.52 -2.77 -11.52 16 3 C 0.51 11.15 7.91 87.66 0.69 11.84 16 4 O -0.57 -18.71 16.50 15.99 0.26 -18.44 16 5 C 0.04 0.71 5.22 71.24 0.37 1.08 16 6 O -0.32 -9.44 9.67 -74.60 -0.72 -10.16 16 7 C 0.05 1.60 6.69 22.49 0.15 1.75 16 8 C -0.15 -4.64 9.03 22.35 0.20 -4.44 16 9 C -0.18 -6.85 9.31 22.39 0.21 -6.64 16 10 C 0.18 6.90 6.64 38.14 0.25 7.15 16 11 N -0.74 -32.02 5.63 -342.98 -1.93 -33.95 16 12 C 0.27 14.35 4.67 85.63 0.40 14.75 16 13 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 14 H 0.07 3.57 7.60 -2.91 -0.02 3.55 16 15 C 0.01 0.52 5.46 84.66 0.46 0.99 16 16 N -0.93 -53.71 13.29 21.45 0.28 -53.43 16 17 Si 0.98 42.39 29.54 68.60 2.03 44.42 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 C -0.14 -4.66 5.90 -19.75 -0.12 -4.78 16 22 C -0.10 -2.71 9.57 71.23 0.68 -2.03 16 23 C -0.10 -3.30 9.63 22.35 0.22 -3.09 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.42 1.90 8.83 -92.71 -0.82 1.08 16 28 H 0.11 1.66 7.66 -2.39 -0.02 1.64 16 29 H 0.11 1.66 7.66 -2.39 -0.02 1.64 16 30 H 0.15 3.41 6.29 -2.91 -0.02 3.39 16 31 H 0.11 4.49 6.73 -2.91 -0.02 4.47 16 32 H 0.40 15.90 6.32 -92.71 -0.59 15.32 16 33 H -0.01 -0.51 7.95 -2.39 -0.02 -0.53 16 34 H -0.01 -0.53 7.95 -2.39 -0.02 -0.55 16 35 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 38 H 0.06 1.64 6.55 -2.39 -0.02 1.62 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -74.03 332.20 1.96 -72.08 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.32 Total: 22.35 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.13 Total: -11.35 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -4.41 Total: -98.89 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.46 Total: -28.60 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -74.03 1.96 -72.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819485239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.088 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds