Wall clock time and date at job start Tue Mar 31 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30830 * 125.89794 * 2 1 4 4 N 1.40087 * 108.20491 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03653 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92491 * 359.75689 * 4 3 2 7 7 C 1.35317 * 107.74425 * 0.38672 * 6 4 3 8 8 C 1.50701 * 126.03549 * 179.87440 * 7 6 4 9 9 C 1.50698 * 109.47092 * 264.68932 * 8 7 6 10 10 O 1.20829 * 120.00077 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.45207 * 117.00145 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 9 14 14 C 1.50701 * 115.54913 * 294.89081 * 13 12 11 15 15 H 1.07995 * 120.00397 * 95.16717 * 14 13 12 16 16 C 1.37878 * 119.99626 * 274.88524 * 14 13 12 17 17 N 1.31520 * 120.00038 * 6.39360 * 16 14 13 18 18 Si 1.86796 * 120.00205 * 186.39563 * 16 14 13 19 19 H 1.48504 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47190 * 119.99838 * 18 16 14 21 21 H 1.48496 * 109.47249 * 239.99932 * 18 16 14 22 22 C 1.53006 * 117.49693 * 80.55213 * 13 12 11 23 23 C 1.52997 * 117.49830 * 149.21413 * 13 12 11 24 24 H 1.08998 * 109.47038 * 269.97828 * 1 2 3 25 25 H 1.08998 * 109.47034 * 29.98203 * 1 2 3 26 26 H 1.09005 * 109.46887 * 149.97760 * 1 2 3 27 27 H 1.08999 * 109.46879 * 89.98074 * 5 4 3 28 28 H 1.09004 * 109.46897 * 209.97195 * 5 4 3 29 29 H 1.08998 * 109.47220 * 329.97557 * 5 4 3 30 30 H 1.07999 * 126.12366 * 180.24162 * 6 4 3 31 31 H 1.09002 * 109.46633 * 144.69341 * 8 7 6 32 32 H 1.08995 * 109.47240 * 24.69182 * 8 7 6 33 33 H 1.09000 * 109.47008 * 60.00041 * 12 11 9 34 34 H 1.08998 * 109.46903 * 299.99954 * 12 11 9 35 35 H 0.96995 * 120.00267 * 180.02562 * 17 16 14 36 36 H 1.08998 * 117.49874 * 215.00127 * 22 13 12 37 37 H 1.08995 * 117.49819 * 0.02968 * 22 13 12 38 38 H 1.08998 * 117.50062 * 359.97438 * 23 13 12 39 39 H 1.09000 * 117.49878 * 144.97626 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 0.0045 7 6 2.3271 -1.1331 -0.0005 8 6 1.8600 -2.5658 -0.0002 9 6 1.5855 -3.0050 -1.4154 10 8 1.7525 -2.2338 -2.3304 11 8 1.1554 -4.2529 -1.6594 12 6 0.9120 -4.6069 -3.0464 13 6 0.4316 -6.0573 -3.1258 14 6 1.4338 -7.0983 -2.6981 15 1 1.4220 -7.4757 -1.6863 16 6 2.3621 -7.5732 -3.6002 17 7 2.4561 -7.0302 -4.7944 18 14 3.4863 -8.9877 -3.1264 19 1 3.1826 -9.4175 -1.7377 20 1 3.2691 -10.1253 -4.0558 21 1 4.9012 -8.5445 -3.2086 22 6 -1.0433 -6.3305 -2.8239 23 6 -0.5260 -6.4231 -4.2617 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.0831 1.7161 1.0262 28 1 5.6092 0.9978 -0.5151 29 1 4.5562 2.4330 -0.5156 30 1 4.4891 -1.3486 0.0091 31 1 0.9474 -2.6502 0.5899 32 1 2.6331 -3.2000 0.4336 33 1 1.8347 -4.4984 -3.6164 34 1 0.1492 -3.9479 -3.4610 35 1 3.1089 -7.3645 -5.4292 36 1 -1.2886 -7.2633 -2.3160 37 1 -1.6714 -5.4769 -2.5691 38 1 -0.8141 -5.6304 -4.9521 39 1 -0.4308 -7.4166 -4.6999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835187492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:49 Heat of formation + Delta-G solvation = 10.724615 kcal Electronic energy + Delta-G solvation = -21314.345449 eV Core-core repulsion = 18031.766251 eV Total energy + Delta-G solvation = -3282.579198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30639 -39.49443 -36.74638 -35.15323 -34.18153 -32.01714 -31.93951 -29.78483 -28.11389 -26.57426 -25.30823 -24.68479 -21.33631 -21.03077 -20.31778 -19.31531 -19.19642 -16.94739 -16.71382 -16.29437 -15.69682 -15.52764 -15.01835 -14.60061 -14.29452 -13.80086 -13.68309 -13.50814 -13.13296 -12.93922 -12.62696 -12.22677 -12.17117 -12.06465 -11.93089 -11.57715 -11.53615 -11.00292 -10.82774 -10.51670 -10.47792 -10.26619 -9.91169 -9.76796 -9.51508 -9.18413 -8.79577 -8.47180 -8.36645 -8.16755 -6.06102 -4.11059 1.86949 2.47218 2.65630 2.91355 3.27476 3.36012 3.40309 3.67596 4.39457 4.40072 4.76226 4.94806 4.96669 5.10509 5.20943 5.23598 5.27390 5.29098 5.39488 5.61717 5.68439 5.74015 5.90704 6.02112 6.03268 6.10181 6.28543 6.37034 6.57486 6.65822 6.72157 6.77300 6.98763 7.04995 7.34651 7.39450 7.52358 7.72645 7.87404 8.39366 8.58555 8.90964 9.54636 11.03415 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.004142 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.531570 B = 6758.212782 C = 7521.367042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.302 5.302 4 N -0.380 5.380 5 C 0.105 3.895 6 C 0.071 3.929 7 C -0.221 4.221 8 C -0.034 4.034 9 C 0.450 3.550 10 O -0.516 6.516 11 O -0.340 6.340 12 C 0.117 3.883 13 C 0.038 3.962 14 C -0.488 4.488 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.892 3.108 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.285 1.285 22 C -0.205 4.205 23 C -0.147 4.147 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.174 0.826 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 12.427 10.496 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.125 5.125 4 N -0.161 5.161 5 C -0.036 4.036 6 C -0.075 4.075 7 C -0.232 4.232 8 C -0.073 4.073 9 C 0.292 3.708 10 O -0.406 6.406 11 O -0.256 6.256 12 C 0.044 3.956 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.519 5.519 18 Si 0.719 3.281 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.242 4.242 23 C -0.185 4.185 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.191 0.809 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.699 13.986 10.005 17.280 hybrid contribution 0.913 -1.562 -0.198 1.820 sum 2.612 12.425 9.808 16.043 Atomic orbital electron populations 1.20190 0.86794 1.03596 1.02696 1.22159 0.96803 0.90123 0.98244 1.77251 0.86337 1.22666 1.26210 1.48249 1.05541 1.04653 1.57640 1.21809 0.83746 0.95025 1.03046 1.22286 0.99147 0.84927 1.01117 1.19359 0.92091 0.94698 1.17062 1.19483 1.04110 0.91829 0.91856 1.23619 0.74151 0.80836 0.92151 1.90616 1.48639 1.54445 1.46886 1.86513 1.75684 1.29747 1.33631 1.22834 1.00257 0.95734 0.76794 1.18786 0.87960 0.90612 0.98901 1.20436 1.14125 1.20652 0.97334 0.91784 1.25019 0.96891 0.96607 0.94981 1.70013 1.35164 1.40610 1.06074 0.86542 0.80413 0.82382 0.78747 1.19548 1.20948 1.21084 1.23002 0.99995 1.01142 1.00066 1.22544 1.04484 1.01400 0.90034 0.90433 0.90885 0.90444 0.90962 0.89515 0.89433 0.80879 0.87426 0.87387 0.90781 0.94499 0.93004 0.90089 0.91522 0.91688 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.22 36.01 0.37 -0.50 16 2 C 0.09 1.37 7.22 -82.41 -0.59 0.77 16 3 N -0.30 -4.58 12.58 33.67 0.42 -4.16 16 4 N -0.38 -4.87 4.01 -68.16 -0.27 -5.14 16 5 C 0.11 0.82 11.47 59.85 0.69 1.51 16 6 C 0.07 0.92 11.40 -17.22 -0.20 0.72 16 7 C -0.22 -3.17 4.59 -105.05 -0.48 -3.65 16 8 C -0.03 -0.47 5.93 -29.04 -0.17 -0.64 16 9 C 0.45 8.60 7.95 36.00 0.29 8.89 16 10 O -0.52 -11.40 15.78 -18.75 -0.30 -11.69 16 11 O -0.34 -7.41 10.16 -39.24 -0.40 -7.81 16 12 C 0.12 2.81 5.29 37.16 0.20 3.00 16 13 C 0.04 0.94 1.61 -155.66 -0.25 0.69 16 14 C -0.49 -13.24 8.77 -34.44 -0.30 -13.54 16 15 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 16 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 17 N -0.88 -24.91 12.93 55.43 0.72 -24.19 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.20 -4.45 9.96 -26.69 -0.27 -4.71 16 23 C -0.15 -3.43 9.43 -26.69 -0.25 -3.68 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.94 7.96 -51.93 -0.41 0.52 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 32 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.97 8.13 -51.93 -0.42 1.55 16 34 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -33.68 343.42 -6.62 -40.30 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.87 Total: 1.03 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.07 Total: -9.39 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.87 Total: -33.49 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.69 Total: -19.50 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.68 -6.62 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835187492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.028 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds