Wall clock time and date at job start Tue Mar 31 2020 00:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30830 * 125.89794 * 2 1 4 4 N 1.40087 * 108.20491 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03653 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92491 * 359.75689 * 4 3 2 7 7 C 1.35317 * 107.74425 * 0.38672 * 6 4 3 8 8 C 1.50701 * 126.03549 * 179.87440 * 7 6 4 9 9 C 1.50698 * 109.47092 * 264.68932 * 8 7 6 10 10 O 1.20829 * 120.00077 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.45207 * 117.00145 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 9 14 14 C 1.50701 * 115.54913 * 294.89081 * 13 12 11 15 15 H 1.07995 * 120.00397 * 95.16717 * 14 13 12 16 16 C 1.37878 * 119.99626 * 274.88524 * 14 13 12 17 17 N 1.31520 * 120.00038 * 6.39360 * 16 14 13 18 18 Si 1.86796 * 120.00205 * 186.39563 * 16 14 13 19 19 H 1.48504 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47190 * 119.99838 * 18 16 14 21 21 H 1.48496 * 109.47249 * 239.99932 * 18 16 14 22 22 C 1.53006 * 117.49693 * 80.55213 * 13 12 11 23 23 C 1.52997 * 117.49830 * 149.21413 * 13 12 11 24 24 H 1.08998 * 109.47038 * 269.97828 * 1 2 3 25 25 H 1.08998 * 109.47034 * 29.98203 * 1 2 3 26 26 H 1.09005 * 109.46887 * 149.97760 * 1 2 3 27 27 H 1.08999 * 109.46879 * 89.98074 * 5 4 3 28 28 H 1.09004 * 109.46897 * 209.97195 * 5 4 3 29 29 H 1.08998 * 109.47220 * 329.97557 * 5 4 3 30 30 H 1.07999 * 126.12366 * 180.24162 * 6 4 3 31 31 H 1.09002 * 109.46633 * 144.69341 * 8 7 6 32 32 H 1.08995 * 109.47240 * 24.69182 * 8 7 6 33 33 H 1.09000 * 109.47008 * 60.00041 * 12 11 9 34 34 H 1.08998 * 109.46903 * 299.99954 * 12 11 9 35 35 H 0.96995 * 120.00267 * 180.02562 * 17 16 14 36 36 H 1.08998 * 117.49874 * 215.00127 * 22 13 12 37 37 H 1.08995 * 117.49819 * 0.02968 * 22 13 12 38 38 H 1.08998 * 117.50062 * 359.97438 * 23 13 12 39 39 H 1.09000 * 117.49878 * 144.97626 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 0.0045 7 6 2.3271 -1.1331 -0.0005 8 6 1.8600 -2.5658 -0.0002 9 6 1.5855 -3.0050 -1.4154 10 8 1.7525 -2.2338 -2.3304 11 8 1.1554 -4.2529 -1.6594 12 6 0.9120 -4.6069 -3.0464 13 6 0.4316 -6.0573 -3.1258 14 6 1.4338 -7.0983 -2.6981 15 1 1.4220 -7.4757 -1.6863 16 6 2.3621 -7.5732 -3.6002 17 7 2.4561 -7.0302 -4.7944 18 14 3.4863 -8.9877 -3.1264 19 1 3.1826 -9.4175 -1.7377 20 1 3.2691 -10.1253 -4.0558 21 1 4.9012 -8.5445 -3.2086 22 6 -1.0433 -6.3305 -2.8239 23 6 -0.5260 -6.4231 -4.2617 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.0831 1.7161 1.0262 28 1 5.6092 0.9978 -0.5151 29 1 4.5562 2.4330 -0.5156 30 1 4.4891 -1.3486 0.0091 31 1 0.9474 -2.6502 0.5899 32 1 2.6331 -3.2000 0.4336 33 1 1.8347 -4.4984 -3.6164 34 1 0.1492 -3.9479 -3.4610 35 1 3.1089 -7.3645 -5.4292 36 1 -1.2886 -7.2633 -2.3160 37 1 -1.6714 -5.4769 -2.5691 38 1 -0.8141 -5.6304 -4.9521 39 1 -0.4308 -7.4166 -4.6999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835187492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:47 Heat of formation + Delta-G solvation = -8.705179 kcal Electronic energy + Delta-G solvation = -21315.187988 eV Core-core repulsion = 18031.766251 eV Total energy + Delta-G solvation = -3283.421737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.31713 -41.07759 -38.54270 -36.85025 -35.13579 -34.00125 -33.09795 -30.62063 -29.38690 -28.18988 -27.20119 -25.70644 -23.00781 -22.38844 -21.49279 -21.15155 -20.37517 -18.53116 -18.25446 -17.56913 -17.29436 -16.85429 -16.53450 -16.25260 -15.57908 -15.25442 -14.88070 -14.58144 -14.30883 -14.08221 -13.90020 -13.69767 -13.45565 -13.25558 -13.01590 -12.94966 -12.89448 -12.79005 -12.71179 -12.33621 -12.06465 -11.62558 -11.58342 -11.48950 -11.28710 -10.74085 -10.47638 -10.17337 -10.05878 -9.34929 -8.11614 -6.22730 0.89007 1.40642 1.42433 1.45322 1.50360 1.56812 1.67446 2.24245 2.44838 3.17813 3.48370 3.53959 3.87483 3.94829 4.18184 4.19728 4.27046 4.38045 4.42229 4.43620 4.46321 4.52907 4.66473 4.70042 4.71709 4.78939 4.91334 4.99065 5.00291 5.09329 5.09997 5.20721 5.50150 5.60653 5.69605 5.77351 5.84257 6.12603 6.38776 6.72728 6.83370 6.99966 7.46196 8.97645 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.004142 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.531570 B = 6758.212782 C = 7521.367042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.077 3.923 3 N -0.335 5.335 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.073 3.927 7 C -0.249 4.249 8 C -0.021 4.021 9 C 0.448 3.552 10 O -0.551 6.551 11 O -0.348 6.348 12 C 0.131 3.869 13 C 0.005 3.995 14 C -0.501 4.501 15 H 0.058 0.942 16 C 0.022 3.978 17 N -0.912 5.912 18 Si 0.953 3.047 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.284 1.284 22 C -0.175 4.175 23 C -0.151 4.151 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.203 0.797 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 12.332 12.240 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 N -0.159 5.159 4 N -0.163 5.163 5 C -0.045 4.045 6 C -0.075 4.075 7 C -0.260 4.260 8 C -0.059 4.059 9 C 0.293 3.707 10 O -0.442 6.442 11 O -0.264 6.264 12 C 0.057 3.943 13 C 0.005 3.995 14 C -0.539 4.539 15 H 0.076 0.924 16 C -0.178 4.178 17 N -0.550 5.550 18 Si 0.779 3.221 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.210 1.210 22 C -0.212 4.212 23 C -0.189 4.189 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.220 0.780 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.083 13.911 11.772 18.343 hybrid contribution 0.838 -1.435 -0.723 1.812 sum 2.921 12.476 11.050 16.920 Atomic orbital electron populations 1.20257 0.85562 1.03213 1.04157 1.22601 0.97975 0.90280 0.98007 1.77183 0.87690 1.23506 1.27531 1.48673 1.05825 1.05304 1.56476 1.22186 0.82736 0.94758 1.04814 1.22827 0.99807 0.85372 0.99465 1.19546 0.92850 0.94713 1.18902 1.19597 1.06133 0.91970 0.88195 1.24743 0.72527 0.79373 0.94035 1.90599 1.50050 1.54973 1.48532 1.86525 1.76285 1.31526 1.32027 1.22410 0.98418 0.95655 0.77842 1.18889 0.89311 0.90549 1.00788 1.20691 1.14866 1.21197 0.97133 0.92360 1.25742 0.98324 0.98827 0.94945 1.70127 1.35986 1.41897 1.07024 0.85575 0.78379 0.79407 0.78751 1.18662 1.20628 1.20970 1.23016 0.97765 1.02227 0.98240 1.22481 1.04694 1.00750 0.90938 0.88011 0.90948 0.91055 0.88872 0.87255 0.89375 0.77976 0.84821 0.84916 0.94605 0.93869 0.93108 0.89444 0.89027 0.90704 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.22 71.24 0.73 -0.93 16 2 C 0.08 2.19 7.22 43.10 0.31 2.50 16 3 N -0.34 -9.94 12.58 -47.39 -0.60 -10.54 16 4 N -0.38 -9.21 4.01 -369.55 -1.48 -10.69 16 5 C 0.09 1.29 11.47 127.77 1.47 2.75 16 6 C 0.07 1.73 11.40 83.54 0.95 2.68 16 7 C -0.25 -6.76 4.59 -20.14 -0.09 -6.85 16 8 C -0.02 -0.53 5.93 29.10 0.17 -0.36 16 9 C 0.45 16.84 7.95 71.24 0.57 17.41 16 10 O -0.55 -24.46 15.78 21.95 0.35 -24.11 16 11 O -0.35 -14.99 10.16 -51.36 -0.52 -15.51 16 12 C 0.13 6.33 5.29 71.98 0.38 6.71 16 13 C 0.01 0.25 1.61 -52.93 -0.08 0.17 16 14 C -0.50 -27.19 8.77 25.60 0.22 -26.96 16 15 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 16 C 0.02 1.17 5.39 84.65 0.46 1.63 16 17 N -0.91 -52.31 12.93 21.45 0.28 -52.03 16 18 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.18 -7.33 9.96 30.62 0.30 -7.02 16 23 C -0.15 -7.00 9.43 30.62 0.29 -6.72 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.67 7.96 -2.38 -0.02 1.65 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.13 2.73 8.09 -2.39 -0.02 2.71 16 32 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.04 1.97 8.13 -2.39 -0.02 1.95 16 34 H 0.04 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -73.27 343.42 6.76 -66.52 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.03 Total: 16.54 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 5.67 Total: -15.00 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.80 Total: -73.26 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.18 Total: -39.62 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -73.27 6.76 -66.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835187492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.814 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds