Wall clock time and date at job start Tue Mar 31 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89645 * 2 1 4 4 N 1.40086 * 108.20349 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03610 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92639 * 359.76120 * 4 3 2 7 7 C 1.35316 * 107.74379 * 0.38808 * 6 4 3 8 8 C 1.50704 * 126.04019 * 179.87708 * 7 6 4 9 9 C 1.50698 * 109.46801 * 264.69074 * 8 7 6 10 10 O 1.20830 * 120.00180 * 359.97438 * 9 8 7 11 11 O 1.34232 * 120.00058 * 179.97438 * 9 8 7 12 12 C 1.45191 * 117.00289 * 175.58633 * 11 9 8 13 13 C 1.50699 * 112.91056 * 307.25261 * 12 11 9 14 14 H 1.07993 * 120.00339 * 114.22908 * 13 12 11 15 15 C 1.37877 * 119.99610 * 294.22822 * 13 12 11 16 16 N 1.31517 * 120.00410 * 7.18877 * 15 13 12 17 17 Si 1.86803 * 119.99888 * 187.19200 * 15 13 12 18 18 H 1.48497 * 109.47007 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46767 * 119.99758 * 17 15 13 20 20 H 1.48500 * 109.47106 * 239.99721 * 17 15 13 21 21 C 1.53782 * 113.61656 * 175.99257 * 12 11 9 22 22 C 1.53771 * 87.17629 * 220.06412 * 21 12 11 23 23 C 1.53783 * 87.08299 * 25.39125 * 22 21 12 24 24 H 1.09001 * 109.47071 * 269.97240 * 1 2 3 25 25 H 1.08998 * 109.46934 * 29.97611 * 1 2 3 26 26 H 1.09005 * 109.46727 * 149.97194 * 1 2 3 27 27 H 1.08993 * 109.47205 * 89.97483 * 5 4 3 28 28 H 1.09009 * 109.46949 * 209.97848 * 5 4 3 29 29 H 1.09002 * 109.47298 * 329.97275 * 5 4 3 30 30 H 1.07995 * 126.12749 * 180.23985 * 6 4 3 31 31 H 1.08994 * 109.47303 * 144.68599 * 8 7 6 32 32 H 1.09006 * 109.46970 * 24.68644 * 8 7 6 33 33 H 0.96995 * 120.00332 * 174.98429 * 16 15 13 34 34 H 1.09007 * 113.61131 * 105.46982 * 21 12 11 35 35 H 1.09005 * 113.61496 * 334.65881 * 21 12 11 36 36 H 1.09009 * 113.61341 * 139.93932 * 22 21 12 37 37 H 1.09000 * 113.61893 * 270.76115 * 22 21 12 38 38 H 1.09006 * 113.60972 * 89.11453 * 23 22 21 39 39 H 1.08997 * 113.61452 * 219.93367 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6143 -0.7154 0.0044 7 6 2.3272 -1.1330 -0.0007 8 6 1.8599 -2.5658 -0.0004 9 6 1.5855 -3.0049 -1.4157 10 8 1.7519 -2.2333 -2.3306 11 8 1.1564 -4.2530 -1.6599 12 6 0.8183 -4.5768 -3.0343 13 6 -0.1578 -3.6034 -3.6432 14 1 0.1500 -2.9717 -4.4633 15 6 -1.4438 -3.5193 -3.1533 16 7 -1.7788 -4.1823 -2.0680 17 14 -2.7106 -2.4637 -4.0311 18 1 -2.0866 -1.8263 -5.2184 19 1 -3.8474 -3.3142 -4.4667 20 1 -3.2049 -1.4120 -3.1065 21 6 0.4300 -6.0501 -3.2426 22 6 1.2260 -5.9950 -4.5570 23 6 2.0440 -4.8579 -3.9225 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 5.0828 1.7155 1.0274 28 1 5.6094 0.9984 -0.5143 29 1 4.5563 2.4335 -0.5138 30 1 4.4891 -1.3485 0.0090 31 1 0.9474 -2.6503 0.5896 32 1 2.6331 -3.2000 0.4333 33 1 -2.6611 -4.0667 -1.6819 34 1 -0.6396 -6.2037 -3.3859 35 1 0.8586 -6.7238 -2.5004 36 1 1.8086 -6.8954 -4.7528 37 1 0.6314 -5.6808 -5.4148 38 1 2.9147 -5.2045 -3.3657 39 1 2.2787 -4.0497 -4.6151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835400779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:36 Heat of formation + Delta-G solvation = -7.864940 kcal Electronic energy + Delta-G solvation = -22376.085730 eV Core-core repulsion = 19092.700428 eV Total energy + Delta-G solvation = -3283.385302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.23400 -40.84716 -38.77546 -35.88130 -35.04932 -34.31633 -32.93424 -30.58235 -28.93239 -28.01563 -26.29758 -25.90957 -24.66314 -22.16473 -21.35221 -20.41361 -20.28479 -18.69369 -17.54950 -17.18799 -16.91608 -16.79403 -16.22917 -16.20440 -15.64937 -15.13071 -14.82340 -14.39512 -14.25814 -14.06437 -13.81063 -13.47449 -13.32886 -13.03570 -12.95312 -12.92872 -12.89687 -12.80332 -12.62201 -12.08953 -12.06879 -11.76525 -11.55749 -11.45047 -11.00012 -10.72905 -10.42186 -10.31585 -10.12216 -9.27024 -8.15107 -6.28791 0.93850 1.32679 1.36676 1.47077 1.62790 1.72135 1.96510 2.37970 2.73537 3.21069 3.57084 3.91081 4.04383 4.08777 4.17796 4.24564 4.29521 4.40528 4.45473 4.47214 4.51448 4.68728 4.70125 4.75030 4.82000 4.91375 4.96671 5.00670 5.10125 5.17584 5.19323 5.41169 5.50411 5.67741 5.72228 5.85291 6.09537 6.20313 6.63756 6.73407 6.75515 7.38526 7.64338 8.88871 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.006291 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.811677 B = 4449.693513 C = 5319.321087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.074 3.926 3 N -0.335 5.335 4 N -0.380 5.380 5 C 0.096 3.904 6 C 0.076 3.924 7 C -0.241 4.241 8 C -0.028 4.028 9 C 0.456 3.544 10 O -0.537 6.537 11 O -0.365 6.365 12 C 0.216 3.784 13 C -0.517 4.517 14 H 0.039 0.961 15 C 0.040 3.960 16 N -0.883 5.883 17 Si 0.935 3.065 18 H -0.280 1.280 19 H -0.269 1.269 20 H -0.279 1.279 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.154 4.154 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.211 0.789 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.264 0.736 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 3.390 6.662 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 N -0.159 5.159 4 N -0.162 5.162 5 C -0.044 4.044 6 C -0.071 4.071 7 C -0.252 4.252 8 C -0.066 4.066 9 C 0.299 3.701 10 O -0.427 6.427 11 O -0.282 6.282 12 C 0.181 3.819 13 C -0.554 4.554 14 H 0.057 0.943 15 C -0.163 4.163 16 N -0.521 5.521 17 Si 0.761 3.239 18 H -0.205 1.205 19 H -0.194 1.194 20 H -0.205 1.205 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.191 4.191 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.228 0.772 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.375 4.877 6.430 13.947 hybrid contribution -1.029 -0.003 -0.693 1.240 sum 10.346 4.874 5.737 12.795 Atomic orbital electron populations 1.20136 0.86926 1.02398 1.03490 1.22380 0.97290 0.90912 0.98517 1.77148 0.87952 1.23120 1.27714 1.48659 1.05584 1.05387 1.56530 1.22195 0.82656 0.94696 1.04823 1.22756 0.99332 0.85250 0.99736 1.19563 0.93031 0.94602 1.18013 1.19553 1.04463 0.92215 0.90397 1.23800 0.73289 0.80412 0.92553 1.90523 1.49379 1.54473 1.48292 1.86398 1.74535 1.30992 1.36306 1.21354 0.91606 0.93296 0.75597 1.20954 0.95017 1.21712 1.17745 0.94310 1.25533 0.99355 0.96026 0.95423 1.70091 1.21263 1.40947 1.19759 0.85861 0.79764 0.79202 0.79053 1.20470 1.19394 1.20462 1.22851 0.99566 0.95359 0.96543 1.22437 0.98103 0.98051 0.96424 1.23501 0.97768 0.98461 0.99410 0.88349 0.91321 0.92698 0.88824 0.86846 0.89618 0.77223 0.87947 0.85125 0.92626 0.93147 0.90830 0.89079 0.91033 0.90380 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.51 10.22 71.24 0.73 -1.78 16 2 C 0.07 2.77 7.22 43.10 0.31 3.08 16 3 N -0.34 -12.02 12.58 -47.38 -0.60 -12.62 16 4 N -0.38 -10.66 4.01 -369.56 -1.48 -12.14 16 5 C 0.10 1.53 11.47 127.77 1.47 2.99 16 6 C 0.08 2.11 11.40 83.54 0.95 3.06 16 7 C -0.24 -8.30 4.59 -20.14 -0.09 -8.39 16 8 C -0.03 -0.96 5.93 29.10 0.17 -0.79 16 9 C 0.46 21.25 7.55 71.24 0.54 21.79 16 10 O -0.54 -28.64 14.44 21.95 0.32 -28.32 16 11 O -0.37 -18.31 9.93 -51.44 -0.51 -18.82 16 12 C 0.22 10.94 0.49 -10.95 -0.01 10.93 16 13 C -0.52 -29.35 6.42 25.60 0.16 -29.19 16 14 H 0.04 2.36 7.82 -2.91 -0.02 2.33 16 15 C 0.04 2.22 5.20 84.65 0.44 2.66 16 16 N -0.88 -49.57 12.59 21.45 0.27 -49.30 16 17 Si 0.94 44.88 29.55 68.60 2.03 46.91 16 18 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 C -0.11 -4.77 7.19 31.12 0.22 -4.54 16 22 C -0.11 -4.39 7.81 31.12 0.24 -4.15 16 23 C -0.15 -6.72 7.21 31.18 0.22 -6.49 16 24 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 26 H 0.05 2.26 7.96 -2.38 -0.02 2.24 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.21 3.84 8.06 -2.91 -0.02 3.81 16 31 H 0.10 3.53 8.09 -2.39 -0.02 3.51 16 32 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 33 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 34 H 0.05 2.49 7.64 -2.38 -0.02 2.48 16 35 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 36 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 38 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.04 1.98 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -74.92 334.52 6.42 -68.50 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.03 Total: 16.61 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.37 Total: -10.81 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.81 Total: -74.06 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.19 Total: -47.14 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -74.92 6.42 -68.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.635 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds