Wall clock time and date at job start Tue Mar 31 2020 00:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50695 * 119.99488 * 2 1 4 4 C 1.53001 * 109.47580 * 294.99722 * 3 2 1 5 5 C 1.53000 * 109.47317 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47065 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99807 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00154 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99786 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47370 * 89.99923 * 10 8 6 12 12 H 1.48503 * 109.47031 * 209.99519 * 10 8 6 13 13 H 1.48498 * 109.47211 * 329.99831 * 10 8 6 14 14 N 1.28008 * 120.00334 * 179.97438 * 2 1 3 15 15 N 1.40109 * 119.99837 * 0.02562 * 14 2 1 16 16 C 1.34777 * 119.99659 * 180.27687 * 15 14 2 17 17 O 1.21723 * 120.00180 * 359.71893 * 16 15 14 18 18 C 1.46608 * 119.99846 * 179.72213 * 16 15 14 19 19 C 1.36576 * 125.99116 * 179.97438 * 18 16 15 20 20 C 1.40364 * 106.70719 * 179.97438 * 19 18 16 21 21 C 1.35135 * 107.11525 * 0.02562 * 20 19 18 22 22 C 1.50702 * 125.61301 * 180.02562 * 21 20 19 23 23 O 1.33941 * 108.77242 * 359.76853 * 21 20 19 24 24 H 1.09001 * 109.47282 * 269.99761 * 1 2 3 25 25 H 1.09001 * 109.47076 * 30.00108 * 1 2 3 26 26 H 1.09005 * 109.46961 * 150.00334 * 1 2 3 27 27 H 1.09002 * 109.47260 * 55.00523 * 3 2 1 28 28 H 1.09005 * 109.47071 * 174.99536 * 3 2 1 29 29 H 1.08994 * 109.47150 * 300.00640 * 4 3 2 30 30 H 1.09005 * 109.46612 * 60.00082 * 4 3 2 31 31 H 1.08994 * 109.47618 * 300.00458 * 5 4 3 32 32 H 1.09007 * 109.46612 * 60.00522 * 5 4 3 33 33 H 0.97001 * 120.00110 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99794 * 359.97438 * 15 14 2 35 35 H 1.07998 * 126.64448 * 359.97438 * 19 18 16 36 36 H 1.07992 * 126.43970 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47020 * 90.00021 * 22 21 20 38 38 H 1.09001 * 109.47194 * 209.99995 * 22 21 20 39 39 H 1.09002 * 109.47413 * 330.00315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 1.9875 2.0517 -1.3073 5 6 2.7519 3.3770 -1.3070 6 6 2.4826 4.1126 -2.5945 7 1 1.8310 3.6783 -3.3383 8 6 3.0680 5.3398 -2.8227 9 7 3.8610 5.8688 -1.9167 10 14 2.7336 6.2518 -4.4182 11 1 1.5464 7.1278 -4.2483 12 1 3.9139 7.0810 -4.7712 13 1 2.4745 5.2720 -5.5036 14 7 2.1472 -1.1085 0.0005 15 7 1.4467 -2.3219 0.0005 16 6 2.1206 -3.4891 0.0067 17 8 3.3379 -3.4890 0.0071 18 6 1.3877 -4.7588 0.0128 19 6 1.9434 -6.0063 0.0188 20 6 0.8796 -6.9220 0.0239 21 6 -0.2644 -6.2026 0.0202 22 6 -1.6594 -6.7725 0.0240 23 8 0.0459 -4.8996 0.0183 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 1.9316 1.9145 0.8419 28 1 3.3287 1.1080 0.0897 29 1 2.3163 1.4423 -2.1491 30 1 0.9192 2.2488 -1.3969 31 1 2.4228 3.9862 -0.4653 32 1 3.8203 3.1802 -1.2172 33 1 4.2725 6.7324 -2.0771 34 1 0.4767 -2.3219 0.0005 35 1 2.9973 -6.2425 0.0196 36 1 0.9602 -7.9989 0.0297 37 1 -1.9954 -6.9040 1.0526 38 1 -2.3326 -6.0890 -0.4935 39 1 -1.6594 -7.7367 -0.4843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841629401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:54 Heat of formation + Delta-G solvation = -0.521781 kcal Electronic energy + Delta-G solvation = -20158.626546 eV Core-core repulsion = 16875.559667 eV Total energy + Delta-G solvation = -3283.066879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.07188 -39.59752 -37.63431 -34.75998 -33.74282 -32.96144 -32.38523 -31.26319 -28.87055 -27.64311 -27.01303 -23.91400 -22.67199 -21.97554 -20.62226 -20.32190 -19.59673 -18.37065 -16.86275 -16.47244 -16.12128 -15.93372 -15.10079 -14.94866 -14.50943 -14.08425 -13.86956 -13.75722 -13.62482 -13.51447 -13.41335 -13.35061 -12.41750 -12.38995 -12.07867 -11.81292 -11.62168 -11.36385 -10.82860 -10.70688 -10.57411 -10.48671 -10.40052 -10.02699 -9.67745 -9.38951 -9.12610 -8.94085 -8.61642 -8.33166 -5.98310 -4.00622 0.67425 1.85970 2.12343 2.16569 2.56529 3.11656 3.33027 3.39593 3.43032 4.12544 4.44691 4.47245 4.53011 4.65481 4.83713 4.91726 4.92863 5.08300 5.13520 5.26925 5.34269 5.37673 5.45468 5.56933 5.82222 5.85419 5.96341 5.99339 6.01040 6.38687 6.50046 6.66303 6.82223 6.97832 7.09984 7.46764 7.68925 7.83180 8.01640 8.31903 8.43600 9.06310 9.63343 11.12988 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.002500 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.725617 B =11197.313145 C =11395.961744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 C -0.066 4.066 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.251 5.251 15 N -0.582 5.582 16 C 0.620 3.380 17 O -0.486 6.486 18 C -0.078 4.078 19 C -0.110 4.110 20 C -0.223 4.223 21 C 0.020 3.980 22 C -0.079 4.079 23 O -0.165 6.165 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.386 0.614 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 -24.848 6.384 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.069 4.069 3 C -0.106 4.106 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.055 5.055 15 N -0.323 5.323 16 C 0.406 3.594 17 O -0.360 6.360 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.242 4.242 21 C -0.032 4.032 22 C -0.135 4.135 23 O -0.062 6.062 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.226 0.774 35 H 0.181 0.819 36 H 0.176 0.824 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.221 -24.999 6.421 28.144 hybrid contribution -1.377 0.599 -0.891 1.746 sum -12.598 -24.400 5.531 28.012 Atomic orbital electron populations 1.21438 0.93110 1.04254 1.03548 1.25579 0.94614 0.94331 0.92371 1.20739 1.00148 0.88480 1.01240 1.21644 1.00715 0.98394 0.93431 1.19110 0.95470 0.89901 0.97148 1.21238 1.28390 1.03318 1.02940 0.92727 1.25019 0.95188 0.97591 0.96688 1.69959 1.31276 1.17903 1.34267 0.86608 0.77713 0.79804 0.83948 1.20702 1.21232 1.19922 1.74728 1.23719 0.90625 1.16456 1.46816 1.08630 1.03596 1.73258 1.16172 0.86305 0.79819 0.77084 1.90913 1.11619 1.85577 1.47861 1.21908 0.80227 0.95809 1.15192 1.21977 1.01375 0.90120 0.99595 1.21612 0.90998 1.01125 1.10435 1.22867 0.98028 0.80351 1.02004 1.20438 0.88002 1.01043 1.04061 1.84000 1.23582 1.27565 1.71044 0.89785 0.88588 0.92013 0.89485 0.89869 0.93036 0.92930 0.96347 0.96281 0.92998 0.77386 0.81897 0.82429 0.89467 0.90059 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.46 36.01 0.34 -1.45 16 2 C 0.12 1.84 6.55 -78.91 -0.52 1.32 16 3 C -0.07 -1.09 5.60 -27.88 -0.16 -1.25 16 4 C -0.10 -2.03 5.03 -26.73 -0.13 -2.16 16 5 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 6 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 7 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 N -0.25 -4.24 10.93 35.60 0.39 -3.85 16 15 N -0.58 -8.43 6.09 30.25 0.18 -8.24 16 16 C 0.62 9.55 7.90 -12.88 -0.10 9.44 16 17 O -0.49 -9.21 17.20 5.17 0.09 -9.13 16 18 C -0.08 -0.96 7.13 -36.81 -0.26 -1.23 16 19 C -0.11 -1.16 10.62 -39.38 -0.42 -1.58 16 20 C -0.22 -1.79 10.77 -39.89 -0.43 -2.22 16 21 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 22 C -0.08 -0.30 10.41 36.01 0.37 0.08 16 23 O -0.17 -1.73 10.40 4.97 0.05 -1.68 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 1.03 6.91 -51.93 -0.36 0.68 16 26 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.96 7.01 -51.93 -0.36 0.59 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.39 4.43 6.14 -182.59 -1.12 3.31 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -34.50 340.88 -6.91 -41.41 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.36 Total: -1.98 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.11 Total: -12.18 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 1.31 Total: -38.22 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.14 Total: -10.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.50 -6.91 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841629401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.886 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds