Wall clock time and date at job start Tue Mar 31 2020 00:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34512 * 125.79226 * 2 1 4 4 C 1.41379 * 106.84086 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79090 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47393 * 340.02245 * 6 5 4 8 8 O 1.42900 * 109.47234 * 220.02126 * 6 5 4 9 9 C 1.53004 * 109.47466 * 100.02284 * 6 5 4 10 10 N 1.46898 * 109.47028 * 184.99894 * 9 6 5 11 11 C 1.46904 * 110.99852 * 179.97438 * 10 9 6 12 12 C 1.52993 * 109.47123 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47330 * 55.00148 * 12 11 10 14 14 C 1.47200 * 109.47065 * 294.99747 * 12 11 10 15 15 N 8.83794 * 132.20223 * 168.51302 * 2 1 3 16 16 C 1.53002 * 109.47083 * 174.99860 * 12 11 10 17 17 C 1.50703 * 109.47057 * 184.99810 * 16 12 11 18 18 H 1.07993 * 120.00007 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99610 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99905 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00274 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47185 * 89.99821 * 21 19 17 23 23 H 1.48503 * 109.46966 * 209.99816 * 21 19 17 24 24 H 1.48498 * 109.46940 * 329.99730 * 21 19 17 25 25 O 1.34301 * 108.41872 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47797 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47078 * 299.99936 * 1 2 3 28 28 H 1.09005 * 109.47246 * 59.99506 * 1 2 3 29 29 H 1.07997 * 126.57601 * 0.02562 * 3 2 1 30 30 H 1.08007 * 126.57604 * 180.02562 * 4 3 2 31 31 H 0.96694 * 114.00041 * 300.00344 * 8 6 5 32 32 H 1.09000 * 109.46531 * 304.99901 * 9 6 5 33 33 H 1.08999 * 109.46986 * 64.99937 * 9 6 5 34 34 H 1.00898 * 111.00247 * 303.95381 * 10 9 6 35 35 H 1.09005 * 109.47261 * 300.00167 * 11 10 9 36 36 H 1.08992 * 109.46962 * 59.99698 * 11 10 9 37 37 H 1.08999 * 109.47059 * 304.99998 * 16 12 11 38 38 H 1.09001 * 109.47202 * 65.00036 * 16 12 11 39 39 H 0.97002 * 120.00644 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0004 6 6 4.7705 -1.6380 0.0014 7 1 5.6508 -1.0990 -0.3488 8 8 4.5134 -2.7446 -0.8654 9 6 5.0174 -2.1496 1.4220 10 7 6.2454 -2.9554 1.4457 11 6 6.5153 -3.4641 2.7972 12 6 7.7992 -4.2959 2.7820 13 1 8.6139 -3.6993 2.3715 14 6 7.5989 -5.4924 1.9484 15 7 7.4438 -6.4158 1.3038 16 6 8.1480 -4.7216 4.2096 17 6 9.4754 -5.4352 4.2109 18 1 10.0158 -5.5719 3.2860 19 6 9.9996 -5.9137 5.3930 20 7 11.1577 -6.5369 5.3942 21 14 9.0643 -5.6778 6.9928 22 1 8.1611 -6.8357 7.2134 23 1 10.0271 -5.5794 8.1191 24 1 8.2614 -4.4309 6.9175 25 8 2.2924 -1.0894 0.0002 26 1 -0.3635 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.9665 2.1203 0.0004 30 1 4.5212 1.2433 0.0012 31 1 3.7421 -3.2706 -0.6136 32 1 5.1254 -1.3026 2.0995 33 1 4.1741 -2.7632 1.7389 34 1 6.1956 -3.7102 0.7781 35 1 6.6339 -2.6260 3.4840 36 1 5.6825 -4.0866 3.1240 37 1 8.2091 -3.8395 4.8471 38 1 7.3754 -5.3907 4.5883 39 1 11.5268 -6.8732 6.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843089786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:53 Heat of formation + Delta-G solvation = -21.758436 kcal Electronic energy + Delta-G solvation = -20500.371665 eV Core-core repulsion = 17216.383896 eV Total energy + Delta-G solvation = -3283.987769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.91995 -38.35669 -37.04839 -34.94091 -33.59640 -33.45407 -32.56855 -31.73727 -29.49002 -27.25827 -25.37681 -22.92791 -22.41473 -22.11566 -21.39118 -20.47786 -17.94871 -17.06796 -16.89534 -16.56160 -16.25530 -15.77139 -15.33179 -14.62088 -14.56458 -14.01178 -13.61344 -13.46519 -13.40443 -13.15189 -13.08593 -13.02514 -12.85779 -12.42236 -12.28404 -12.17630 -11.86099 -11.70327 -11.46220 -11.19482 -10.89617 -10.65175 -10.32435 -10.17072 -9.99656 -9.78343 -9.34043 -8.62681 -8.60773 -8.49999 -6.11124 -4.11908 1.35786 2.28827 2.50641 3.26017 3.33430 3.34115 3.51858 3.56549 3.90650 4.10110 4.37438 4.40458 4.61176 4.68484 4.71020 4.75471 4.84824 4.99130 5.03425 5.23282 5.27142 5.30951 5.46094 5.49181 5.52461 5.57754 5.74659 5.82130 5.96772 6.13198 6.22055 6.33185 6.82557 6.86888 6.93442 7.10641 7.24367 7.31777 7.62619 8.33561 8.42011 8.92606 9.48470 11.01979 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.002970 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.645395 B = 9426.661785 C = 9879.841361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.193 4.193 5 C -0.046 4.046 6 C 0.195 3.805 7 H 0.138 0.862 8 O -0.549 6.549 9 C 0.030 3.970 10 N -0.686 5.686 11 C 0.065 3.935 12 C 0.018 3.982 13 H 0.118 0.882 14 C 0.236 3.764 15 N -0.466 5.466 16 C -0.004 4.004 17 C -0.528 4.528 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.263 1.263 25 O -0.173 6.173 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.379 0.621 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.348 0.652 35 H 0.092 0.908 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.723 16.972 -8.309 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.232 4.232 4 C -0.213 4.213 5 C -0.097 4.097 6 C 0.135 3.865 7 H 0.155 0.845 8 O -0.353 6.353 9 C -0.100 4.100 10 N -0.319 5.319 11 C -0.065 4.065 12 C -0.004 4.004 13 H 0.135 0.865 14 C -0.081 4.081 15 N -0.142 5.142 16 C -0.043 4.043 17 C -0.566 4.566 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.187 1.187 25 O -0.070 6.070 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.167 0.833 35 H 0.110 0.890 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.979 15.953 -9.402 27.240 hybrid contribution -1.314 -0.254 1.634 2.112 sum -21.293 15.699 -7.768 27.571 Atomic orbital electron populations 1.20316 0.85086 1.04079 1.03585 1.22489 0.94029 0.84172 1.05704 1.21570 0.92678 0.99477 1.09493 1.21614 0.98444 0.93680 1.07537 1.23316 0.83481 0.95574 1.07291 1.20631 0.90735 0.84588 0.90520 0.84480 1.86640 1.52334 1.42219 1.54141 1.22650 0.92003 0.98967 0.96390 1.60457 1.34986 1.28315 1.08093 1.22122 0.96151 0.98291 0.89907 1.19063 0.97972 0.87312 0.96088 0.86456 1.29179 0.92131 0.94397 0.92379 1.81087 1.09942 1.11142 1.12068 1.19637 0.98013 0.97591 0.89062 1.21031 1.02917 1.36656 0.95992 0.90734 1.24997 0.94725 0.94379 0.99049 1.69904 1.18114 1.37934 1.27516 0.86811 0.79988 0.79236 0.83454 1.20329 1.21237 1.18707 1.83919 1.16190 1.35262 1.71583 0.90573 0.89614 0.89670 0.83400 0.83087 0.77360 0.89275 0.94572 0.83323 0.88961 0.94638 0.94257 0.96296 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.00 0.38 -0.01 16 2 C -0.01 -0.12 7.32 -35.63 -0.26 -0.39 16 3 C -0.21 -1.90 10.81 -39.70 -0.43 -2.32 16 4 C -0.19 -1.85 10.80 -39.70 -0.43 -2.28 16 5 C -0.05 -0.47 6.18 -35.63 -0.22 -0.69 16 6 C 0.19 1.93 3.67 -27.88 -0.10 1.83 16 7 H 0.14 1.31 8.13 -51.93 -0.42 0.89 16 8 O -0.55 -6.04 12.85 -37.33 -0.48 -6.52 16 9 C 0.03 0.30 5.34 -3.82 -0.02 0.28 16 10 N -0.69 -8.50 6.50 -113.78 -0.74 -9.24 16 11 C 0.07 0.88 5.12 -3.83 -0.02 0.86 16 12 C 0.02 0.31 2.42 -93.41 -0.23 0.08 16 13 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 14 C 0.24 4.73 12.98 -20.74 -0.27 4.46 16 15 N -0.47 -10.21 18.54 42.18 0.78 -9.43 16 16 C 0.00 -0.09 3.49 -27.88 -0.10 -0.18 16 17 C -0.53 -14.21 9.15 -34.44 -0.32 -14.53 16 18 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 21 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 25 O -0.17 -1.84 10.58 3.62 0.04 -1.81 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.38 3.23 8.97 45.56 0.41 3.64 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.35 4.70 7.37 -39.29 -0.29 4.41 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.79 7.20 -51.93 -0.37 0.41 16 38 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -32.77 340.46 -6.15 -38.92 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.88 Total: 4.33 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.11 Total: -10.99 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.82 Total: -44.98 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.44 Total: -8.32 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.77 -6.15 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843089786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.157 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds