Wall clock time and date at job start Tue Mar 31 2020 00:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34512 * 125.79226 * 2 1 4 4 C 1.41379 * 106.84086 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79090 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47393 * 340.02245 * 6 5 4 8 8 O 1.42900 * 109.47234 * 220.02126 * 6 5 4 9 9 C 1.53004 * 109.47466 * 100.02284 * 6 5 4 10 10 N 1.46898 * 109.47028 * 184.99894 * 9 6 5 11 11 C 1.46904 * 110.99852 * 179.97438 * 10 9 6 12 12 C 1.52993 * 109.47123 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47330 * 55.00148 * 12 11 10 14 14 C 1.47200 * 109.47065 * 294.99747 * 12 11 10 15 15 N 8.83794 * 132.20223 * 168.51302 * 2 1 3 16 16 C 1.53002 * 109.47083 * 174.99860 * 12 11 10 17 17 C 1.50703 * 109.47057 * 184.99810 * 16 12 11 18 18 H 1.07993 * 120.00007 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99610 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99905 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00274 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47185 * 89.99821 * 21 19 17 23 23 H 1.48503 * 109.46966 * 209.99816 * 21 19 17 24 24 H 1.48498 * 109.46940 * 329.99730 * 21 19 17 25 25 O 1.34301 * 108.41872 * 359.97438 * 5 4 3 26 26 H 1.09004 * 109.47797 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47078 * 299.99936 * 1 2 3 28 28 H 1.09005 * 109.47246 * 59.99506 * 1 2 3 29 29 H 1.07997 * 126.57601 * 0.02562 * 3 2 1 30 30 H 1.08007 * 126.57604 * 180.02562 * 4 3 2 31 31 H 0.96694 * 114.00041 * 300.00344 * 8 6 5 32 32 H 1.09000 * 109.46531 * 304.99901 * 9 6 5 33 33 H 1.08999 * 109.46986 * 64.99937 * 9 6 5 34 34 H 1.00898 * 111.00247 * 303.95381 * 10 9 6 35 35 H 1.09005 * 109.47261 * 300.00167 * 11 10 9 36 36 H 1.08992 * 109.46962 * 59.99698 * 11 10 9 37 37 H 1.08999 * 109.47059 * 304.99998 * 16 12 11 38 38 H 1.09001 * 109.47202 * 65.00036 * 16 12 11 39 39 H 0.97002 * 120.00644 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0004 6 6 4.7705 -1.6380 0.0014 7 1 5.6508 -1.0990 -0.3488 8 8 4.5134 -2.7446 -0.8654 9 6 5.0174 -2.1496 1.4220 10 7 6.2454 -2.9554 1.4457 11 6 6.5153 -3.4641 2.7972 12 6 7.7992 -4.2959 2.7820 13 1 8.6139 -3.6993 2.3715 14 6 7.5989 -5.4924 1.9484 15 7 7.4438 -6.4158 1.3038 16 6 8.1480 -4.7216 4.2096 17 6 9.4754 -5.4352 4.2109 18 1 10.0158 -5.5719 3.2860 19 6 9.9996 -5.9137 5.3930 20 7 11.1577 -6.5369 5.3942 21 14 9.0643 -5.6778 6.9928 22 1 8.1611 -6.8357 7.2134 23 1 10.0271 -5.5794 8.1191 24 1 8.2614 -4.4309 6.9175 25 8 2.2924 -1.0894 0.0002 26 1 -0.3635 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.9665 2.1203 0.0004 30 1 4.5212 1.2433 0.0012 31 1 3.7421 -3.2706 -0.6136 32 1 5.1254 -1.3026 2.0995 33 1 4.1741 -2.7632 1.7389 34 1 6.1956 -3.7102 0.7781 35 1 6.6339 -2.6260 3.4840 36 1 5.6825 -4.0866 3.1240 37 1 8.2091 -3.8395 4.8471 38 1 7.3754 -5.3907 4.5883 39 1 11.5268 -6.8732 6.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843089786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:53 Heat of formation + Delta-G solvation = -46.222394 kcal Electronic energy + Delta-G solvation = -20501.432502 eV Core-core repulsion = 17216.383896 eV Total energy + Delta-G solvation = -3285.048606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.59762 -39.34540 -38.30518 -36.25199 -35.27125 -34.17094 -33.64281 -32.99410 -30.45317 -28.59304 -26.35218 -24.07271 -23.48755 -22.94709 -22.79838 -21.15299 -18.95182 -18.70095 -18.33570 -17.51500 -17.07547 -16.57198 -16.50240 -15.93861 -15.57008 -15.31913 -14.75353 -14.59853 -14.38490 -14.13068 -13.99222 -13.93102 -13.76269 -13.74061 -13.62455 -13.23491 -13.08982 -12.78796 -12.60182 -12.54913 -12.40125 -11.92506 -11.75080 -11.71073 -11.37615 -11.21415 -10.83326 -10.73379 -9.47206 -9.25070 -8.24149 -6.29968 0.67746 1.43800 1.44908 1.56199 1.62742 1.86198 1.93183 1.94656 2.41479 3.02760 3.11620 3.22656 3.38032 3.71544 3.87089 3.99646 4.08471 4.12419 4.19834 4.39518 4.52093 4.57338 4.71850 4.73011 4.76068 4.85356 4.85999 4.89704 4.93647 5.10449 5.24591 5.25785 5.45635 5.61352 5.63466 5.93261 6.15454 6.25166 6.27456 6.56368 6.74178 6.80557 7.34387 8.92854 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.002970 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.645395 B = 9426.661785 C = 9879.841361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.227 4.227 4 C -0.200 4.200 5 C -0.064 4.064 6 C 0.201 3.799 7 H 0.139 0.861 8 O -0.565 6.565 9 C 0.036 3.964 10 N -0.690 5.690 11 C 0.076 3.924 12 C 0.023 3.977 13 H 0.121 0.879 14 C 0.247 3.753 15 N -0.506 5.506 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.028 0.972 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.221 1.221 25 O -0.189 6.189 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.387 0.613 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.339 0.661 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.308 19.311 -7.165 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.246 4.246 4 C -0.219 4.219 5 C -0.114 4.114 6 C 0.141 3.859 7 H 0.156 0.844 8 O -0.372 6.372 9 C -0.093 4.093 10 N -0.321 5.321 11 C -0.054 4.054 12 C 0.002 3.998 13 H 0.139 0.861 14 C -0.070 4.070 15 N -0.183 5.183 16 C -0.041 4.041 17 C -0.569 4.569 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.143 1.143 25 O -0.087 6.087 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.236 0.764 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.157 0.843 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.593 18.322 -8.276 30.243 hybrid contribution -0.485 -0.973 1.160 1.590 sum -23.078 17.349 -7.116 29.736 Atomic orbital electron populations 1.20490 0.82723 1.04706 1.05100 1.23237 0.95516 0.83845 1.04707 1.21907 0.92450 1.00549 1.09645 1.21939 0.99443 0.93694 1.06809 1.23347 0.83508 0.95893 1.08652 1.20566 0.90867 0.84280 0.90177 0.84403 1.86608 1.52964 1.42782 1.54827 1.22642 0.90945 0.98889 0.96827 1.60439 1.36430 1.27983 1.07261 1.22030 0.93826 0.98517 0.91059 1.19130 1.00541 0.86685 0.93488 0.86136 1.29792 0.90883 0.94411 0.91875 1.81083 1.11550 1.12381 1.13320 1.19593 0.94700 0.98025 0.91813 1.21416 1.04943 1.36456 0.94134 0.95373 1.26070 0.95659 0.94157 1.03664 1.70092 1.20657 1.40207 1.28618 0.85682 0.78630 0.80834 0.77655 1.20312 1.21608 1.14328 1.83908 1.16537 1.36245 1.71984 0.90398 0.87990 0.88128 0.81456 0.81717 0.76406 0.88043 0.94342 0.84252 0.86424 0.94016 0.91455 0.95645 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 71.23 0.74 0.13 16 2 C -0.02 -0.38 7.32 24.83 0.18 -0.20 16 3 C -0.23 -3.60 10.81 22.19 0.24 -3.36 16 4 C -0.20 -3.49 10.80 22.19 0.24 -3.25 16 5 C -0.06 -1.22 6.18 24.83 0.15 -1.07 16 6 C 0.20 3.72 3.67 29.85 0.11 3.83 16 7 H 0.14 2.48 8.13 -2.39 -0.02 2.46 16 8 O -0.57 -12.09 12.85 -146.98 -1.89 -13.98 16 9 C 0.04 0.66 5.34 86.30 0.46 1.12 16 10 N -0.69 -15.58 6.50 -513.89 -3.34 -18.91 16 11 C 0.08 1.80 5.12 86.30 0.44 2.24 16 12 C 0.02 0.78 2.42 -12.60 -0.03 0.75 16 13 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 14 C 0.25 9.80 12.98 89.43 1.16 10.96 16 15 N -0.51 -22.41 18.54 20.01 0.37 -22.04 16 16 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 17 C -0.53 -28.74 9.15 25.60 0.23 -28.51 16 18 H 0.03 1.73 7.84 -2.91 -0.02 1.70 16 19 C 0.00 0.06 5.47 84.66 0.46 0.52 16 20 N -0.96 -59.42 13.96 21.45 0.30 -59.12 16 21 Si 0.95 41.33 27.47 68.60 1.88 43.21 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.22 -8.10 6.54 99.48 0.65 -7.45 16 25 O -0.19 -3.83 10.58 -0.47 0.00 -3.83 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.39 6.44 8.97 -74.06 -0.66 5.77 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.34 8.74 7.37 -89.70 -0.66 8.08 16 35 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 2.38 7.20 -2.39 -0.02 2.36 16 38 H 0.03 1.00 7.57 -2.39 -0.02 0.98 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.73 340.46 1.51 -71.21 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.31 Total: 20.29 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.50 Total: -16.82 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -2.67 Total: -100.08 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -1.89 Total: -17.81 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.21 kcal Total: -72.73 1.51 -71.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843089786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.991 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds