Wall clock time and date at job start Tue Mar 31 2020 00:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34512 * 125.79610 * 2 1 4 4 C 1.41377 * 106.84495 * 179.75063 * 3 2 1 5 5 C 1.34516 * 106.83962 * 0.37420 * 4 3 2 6 6 C 1.50699 * 125.78988 * 179.88803 * 5 4 3 7 7 H 1.09004 * 109.46963 * 339.71258 * 6 5 4 8 8 O 1.42904 * 109.47186 * 219.72073 * 6 5 4 9 9 C 1.52997 * 109.47337 * 99.71567 * 6 5 4 10 10 N 1.46899 * 109.47254 * 184.99957 * 9 6 5 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 6 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.47315 * 305.00021 * 12 11 10 14 14 C 1.47202 * 109.47391 * 65.00370 * 12 11 10 15 15 N 9.03768 * 157.00085 * 141.34967 * 2 1 3 16 16 C 1.52999 * 109.46980 * 185.00261 * 12 11 10 17 17 C 1.50703 * 109.47285 * 175.00154 * 16 12 11 18 18 H 1.07999 * 119.99683 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00134 * 180.02562 * 17 16 12 20 20 N 1.31516 * 119.99745 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99992 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47397 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99875 * 21 19 17 24 24 H 1.48497 * 109.47450 * 240.00088 * 21 19 17 25 25 O 1.34301 * 108.42307 * 359.62547 * 5 4 3 26 26 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46555 * 299.99711 * 1 2 3 28 28 H 1.08993 * 109.47474 * 59.99481 * 1 2 3 29 29 H 1.08001 * 126.57021 * 0.02562 * 3 2 1 30 30 H 1.07993 * 126.58308 * 180.23502 * 4 3 2 31 31 H 0.96708 * 113.99258 * 299.99726 * 8 6 5 32 32 H 1.09002 * 109.47153 * 64.99954 * 9 6 5 33 33 H 1.09001 * 109.46832 * 305.00144 * 9 6 5 34 34 H 1.00902 * 111.00582 * 303.95797 * 10 9 6 35 35 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 36 36 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 37 37 H 1.09001 * 109.47177 * 294.99779 * 16 12 11 38 38 H 1.08998 * 109.47319 * 55.00163 * 16 12 11 39 39 H 0.96996 * 119.99479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0910 0.0000 4 6 3.6309 0.6319 0.0059 5 6 3.5814 -0.7123 0.0007 6 6 4.7705 -1.6381 0.0017 7 1 5.6506 -1.0993 -0.3494 8 8 4.5130 -2.7452 -0.8644 9 6 5.0182 -2.1487 1.4225 10 7 6.2462 -2.9545 1.4461 11 6 6.5167 -3.4623 2.7978 12 6 7.8007 -4.2942 2.7825 13 1 7.7156 -5.0801 2.0319 14 6 8.9440 -3.4261 2.4567 15 7 9.8263 -2.7578 2.2055 16 6 8.0158 -4.9254 4.1596 17 6 9.2112 -5.8418 4.1109 18 1 9.7626 -5.9617 3.1900 19 6 9.6009 -6.5272 5.2420 20 7 8.9297 -6.3808 6.3635 21 14 11.0821 -7.6637 5.1815 22 1 11.6584 -7.6535 3.8129 23 1 12.1040 -7.1971 6.1528 24 1 10.6614 -9.0444 5.5306 25 8 2.2924 -1.0896 0.0004 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.9666 2.1203 0.0004 30 1 4.5212 1.2431 0.0110 31 1 3.7417 -3.2711 -0.6116 32 1 4.1750 -2.7621 1.7403 33 1 5.1265 -1.3013 2.0994 34 1 6.1961 -3.7099 0.7790 35 1 6.6357 -2.6238 3.4839 36 1 5.6840 -4.0847 3.1254 37 1 8.1895 -4.1406 4.8959 38 1 7.1310 -5.4970 4.4395 39 1 9.2042 -6.8627 7.1593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843089790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:01 Heat of formation + Delta-G solvation = -25.899406 kcal Electronic energy + Delta-G solvation = -20426.452873 eV Core-core repulsion = 17142.285538 eV Total energy + Delta-G solvation = -3284.167335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.88194 -38.26597 -36.87756 -34.87895 -33.53915 -33.41683 -32.54273 -31.56793 -29.31334 -26.90899 -25.25932 -22.94017 -22.28814 -22.07560 -21.67821 -20.44076 -17.92348 -17.30082 -16.45742 -16.42814 -15.88657 -15.78841 -15.11131 -14.69639 -14.30098 -14.11976 -13.77647 -13.49886 -13.38509 -13.20214 -13.07564 -12.76861 -12.39412 -12.29761 -12.21526 -11.98304 -11.70972 -11.55230 -11.23177 -11.06690 -10.73615 -10.63803 -10.45632 -10.24676 -10.12473 -9.55956 -9.22437 -8.56738 -8.47530 -8.38534 -6.10538 -4.13533 1.39382 2.32413 2.54134 3.28323 3.36611 3.41512 3.74178 3.84311 3.97332 4.13011 4.39661 4.46111 4.67701 4.74716 4.78649 4.89440 4.92386 5.03428 5.06453 5.27815 5.30679 5.42595 5.51109 5.56220 5.61519 5.72639 5.79158 5.86374 5.98980 6.25445 6.35450 6.47662 6.85973 6.97199 7.28245 7.40583 7.44698 7.52004 7.85168 8.22259 8.58996 8.91615 9.52132 11.00461 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035253 B = 0.002753 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.073550 B =10168.214155 C =10440.079845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.195 4.195 5 C -0.045 4.045 6 C 0.196 3.804 7 H 0.136 0.864 8 O -0.549 6.549 9 C 0.032 3.968 10 N -0.689 5.689 11 C 0.067 3.933 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.255 3.745 15 N -0.478 5.478 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 O -0.172 6.172 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.379 0.621 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.349 0.651 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.026 10.994 -11.717 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.232 4.232 4 C -0.214 4.214 5 C -0.096 4.096 6 C 0.136 3.864 7 H 0.153 0.847 8 O -0.353 6.353 9 C -0.098 4.098 10 N -0.321 5.321 11 C -0.063 4.063 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.062 4.062 15 N -0.155 5.155 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 O -0.069 6.069 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.226 0.774 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.856 12.414 -12.150 24.205 hybrid contribution -0.599 -1.458 0.682 1.718 sum -17.455 10.956 -11.468 23.585 Atomic orbital electron populations 1.20311 0.85064 1.04079 1.03567 1.22484 0.94021 0.84166 1.05752 1.21566 0.92664 0.99487 1.09476 1.21618 0.98446 0.93759 1.07573 1.23322 0.83485 0.95573 1.07210 1.20618 0.90601 0.84540 0.90631 0.84698 1.86634 1.52315 1.42197 1.54188 1.22617 0.92071 0.98996 0.96140 1.60415 1.34971 1.28423 1.08313 1.22086 0.96280 0.98477 0.89447 1.19209 0.85497 0.93152 1.03383 0.88210 1.28798 0.93597 0.92482 0.91322 1.80940 1.11788 1.11761 1.10998 1.19176 0.98249 0.95776 0.87554 1.21186 1.12724 1.25785 0.96649 0.92394 1.24961 0.96842 0.96845 0.95399 1.69949 1.39909 1.42465 1.00762 0.86526 0.82754 0.80478 0.78278 1.19646 1.20961 1.20864 1.83916 1.16152 1.35221 1.71606 0.90545 0.89630 0.89699 0.83432 0.83188 0.77366 0.94372 0.89638 0.83209 0.90451 0.93184 0.95539 0.94450 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.42 36.01 0.38 -0.02 16 2 C -0.01 -0.13 7.32 -35.63 -0.26 -0.39 16 3 C -0.21 -2.00 10.81 -39.71 -0.43 -2.43 16 4 C -0.19 -2.00 10.80 -39.70 -0.43 -2.43 16 5 C -0.05 -0.48 6.18 -35.62 -0.22 -0.70 16 6 C 0.20 2.01 3.67 -27.89 -0.10 1.91 16 7 H 0.14 1.43 8.13 -51.93 -0.42 1.00 16 8 O -0.55 -5.72 12.85 -37.36 -0.48 -6.20 16 9 C 0.03 0.34 5.34 -3.83 -0.02 0.32 16 10 N -0.69 -8.77 6.20 -113.78 -0.71 -9.47 16 11 C 0.07 0.97 5.05 -3.82 -0.02 0.95 16 12 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 13 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 14 C 0.25 5.34 13.66 -20.79 -0.28 5.06 16 15 N -0.48 -10.92 18.53 42.12 0.78 -10.14 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 17 C -0.53 -13.98 8.60 -34.44 -0.30 -14.28 16 18 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 21 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 O -0.17 -1.86 10.58 3.56 0.04 -1.82 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.38 2.87 8.97 45.56 0.41 3.28 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.35 4.19 8.29 -39.29 -0.33 3.86 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -32.19 345.23 -6.52 -38.72 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.95 Total: 2.07 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.13 Total: -9.88 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.81 Total: -44.41 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.44 Total: -8.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.19 -6.52 -38.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843089790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.816 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds