Wall clock time and date at job start Tue Mar 31 2020 00:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34512 * 125.79610 * 2 1 4 4 C 1.41377 * 106.84495 * 179.75063 * 3 2 1 5 5 C 1.34516 * 106.83962 * 0.37420 * 4 3 2 6 6 C 1.50699 * 125.78988 * 179.88803 * 5 4 3 7 7 H 1.09004 * 109.46963 * 339.71258 * 6 5 4 8 8 O 1.42904 * 109.47186 * 219.72073 * 6 5 4 9 9 C 1.52997 * 109.47337 * 99.71567 * 6 5 4 10 10 N 1.46899 * 109.47254 * 184.99957 * 9 6 5 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 6 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.47315 * 305.00021 * 12 11 10 14 14 C 1.47202 * 109.47391 * 65.00370 * 12 11 10 15 15 N 9.03768 * 157.00085 * 141.34967 * 2 1 3 16 16 C 1.52999 * 109.46980 * 185.00261 * 12 11 10 17 17 C 1.50703 * 109.47285 * 175.00154 * 16 12 11 18 18 H 1.07999 * 119.99683 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00134 * 180.02562 * 17 16 12 20 20 N 1.31516 * 119.99745 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99992 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47397 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99875 * 21 19 17 24 24 H 1.48497 * 109.47450 * 240.00088 * 21 19 17 25 25 O 1.34301 * 108.42307 * 359.62547 * 5 4 3 26 26 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46555 * 299.99711 * 1 2 3 28 28 H 1.08993 * 109.47474 * 59.99481 * 1 2 3 29 29 H 1.08001 * 126.57021 * 0.02562 * 3 2 1 30 30 H 1.07993 * 126.58308 * 180.23502 * 4 3 2 31 31 H 0.96708 * 113.99258 * 299.99726 * 8 6 5 32 32 H 1.09002 * 109.47153 * 64.99954 * 9 6 5 33 33 H 1.09001 * 109.46832 * 305.00144 * 9 6 5 34 34 H 1.00902 * 111.00582 * 303.95797 * 10 9 6 35 35 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 36 36 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 37 37 H 1.09001 * 109.47177 * 294.99779 * 16 12 11 38 38 H 1.08998 * 109.47319 * 55.00163 * 16 12 11 39 39 H 0.96996 * 119.99479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0910 0.0000 4 6 3.6309 0.6319 0.0059 5 6 3.5814 -0.7123 0.0007 6 6 4.7705 -1.6381 0.0017 7 1 5.6506 -1.0993 -0.3494 8 8 4.5130 -2.7452 -0.8644 9 6 5.0182 -2.1487 1.4225 10 7 6.2462 -2.9545 1.4461 11 6 6.5167 -3.4623 2.7978 12 6 7.8007 -4.2942 2.7825 13 1 7.7156 -5.0801 2.0319 14 6 8.9440 -3.4261 2.4567 15 7 9.8263 -2.7578 2.2055 16 6 8.0158 -4.9254 4.1596 17 6 9.2112 -5.8418 4.1109 18 1 9.7626 -5.9617 3.1900 19 6 9.6009 -6.5272 5.2420 20 7 8.9297 -6.3808 6.3635 21 14 11.0821 -7.6637 5.1815 22 1 11.6584 -7.6535 3.8129 23 1 12.1040 -7.1971 6.1528 24 1 10.6614 -9.0444 5.5306 25 8 2.2924 -1.0896 0.0004 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.9666 2.1203 0.0004 30 1 4.5212 1.2431 0.0110 31 1 3.7417 -3.2711 -0.6116 32 1 4.1750 -2.7621 1.7403 33 1 5.1265 -1.3013 2.0994 34 1 6.1961 -3.7099 0.7790 35 1 6.6357 -2.6238 3.4839 36 1 5.6840 -4.0847 3.1254 37 1 8.1895 -4.1406 4.8959 38 1 7.1310 -5.4970 4.4395 39 1 9.2042 -6.8627 7.1593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843089790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:01 Heat of formation + Delta-G solvation = -48.475520 kcal Electronic energy + Delta-G solvation = -20427.431847 eV Core-core repulsion = 17142.285538 eV Total energy + Delta-G solvation = -3285.146309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.60363 -39.26020 -38.22211 -36.23602 -35.29448 -34.17800 -33.50113 -32.89933 -30.27849 -28.31547 -26.35885 -24.26274 -23.49076 -23.10078 -22.81144 -21.16022 -18.76407 -18.68548 -18.33769 -17.26183 -16.87148 -16.65498 -16.54681 -15.96745 -15.35294 -15.31830 -15.06626 -14.43331 -14.22720 -14.02461 -13.93626 -13.78884 -13.75705 -13.67883 -13.46959 -13.20810 -13.02135 -12.78560 -12.63334 -12.51497 -12.43826 -12.34274 -11.91077 -11.53936 -11.32686 -11.07926 -10.84930 -10.55758 -9.40997 -9.25500 -8.19847 -6.27746 0.66766 1.39162 1.42419 1.52813 1.60591 1.85214 2.08523 2.14965 2.41638 3.05426 3.15888 3.34454 3.39422 3.74547 3.88991 4.00230 4.10528 4.11061 4.23499 4.38160 4.52968 4.69688 4.72085 4.73080 4.79066 4.83476 4.86095 4.88213 5.00284 5.09592 5.24011 5.47217 5.59304 5.62139 5.79091 5.92350 6.14384 6.20937 6.46857 6.63783 6.83684 6.94076 7.40962 8.91326 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035253 B = 0.002753 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.073550 B =10168.214155 C =10440.079845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.020 4.020 3 C -0.228 4.228 4 C -0.207 4.207 5 C -0.061 4.061 6 C 0.205 3.795 7 H 0.129 0.871 8 O -0.559 6.559 9 C 0.039 3.961 10 N -0.696 5.696 11 C 0.079 3.921 12 C 0.020 3.980 13 H 0.120 0.880 14 C 0.265 3.735 15 N -0.514 5.514 16 C 0.037 3.963 17 C -0.538 4.538 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.949 3.051 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.272 1.272 25 O -0.184 6.184 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.390 0.610 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.355 0.645 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.001 0.999 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.270 10.898 -12.519 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.247 4.247 4 C -0.226 4.226 5 C -0.112 4.112 6 C 0.146 3.854 7 H 0.147 0.853 8 O -0.366 6.366 9 C -0.091 4.091 10 N -0.329 5.329 11 C -0.051 4.051 12 C -0.002 4.002 13 H 0.138 0.862 14 C -0.051 4.051 15 N -0.191 5.191 16 C -0.002 4.002 17 C -0.576 4.576 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.775 3.225 22 H -0.194 1.194 23 H -0.212 1.212 24 H -0.198 1.198 25 O -0.082 6.082 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.240 0.760 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.175 0.825 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.019 0.981 38 H 0.055 0.945 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.115 12.314 -12.967 25.454 hybrid contribution -0.266 -1.392 0.910 1.684 sum -18.381 10.923 -12.056 24.546 Atomic orbital electron populations 1.20496 0.82481 1.04891 1.05079 1.23252 0.95566 0.83745 1.04454 1.21888 0.92346 1.00639 1.09850 1.21920 0.99409 0.93981 1.07281 1.23351 0.83669 0.95783 1.08360 1.20423 0.90428 0.84451 0.90142 0.85335 1.86604 1.53125 1.42400 1.54446 1.22566 0.91396 0.98632 0.96478 1.60322 1.36467 1.28740 1.07338 1.21879 0.94717 0.98006 0.90508 1.19178 0.86283 0.93707 1.01018 0.86198 1.29325 0.93456 0.91946 0.90385 1.80938 1.12896 1.13164 1.12149 1.18999 0.96934 0.94602 0.89633 1.21592 1.13641 1.25979 0.96358 0.92766 1.25718 0.99363 0.98454 0.95323 1.70038 1.41416 1.43618 1.01333 0.85636 0.79666 0.79131 0.78095 1.19399 1.21168 1.19775 1.83907 1.16299 1.36066 1.71892 0.90087 0.88103 0.88057 0.81578 0.82379 0.76012 0.93271 0.89990 0.82538 0.91075 0.91314 0.98067 0.94524 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.42 71.24 0.74 0.11 16 2 C -0.02 -0.35 7.32 24.83 0.18 -0.16 16 3 C -0.23 -3.99 10.81 22.19 0.24 -3.75 16 4 C -0.21 -4.09 10.80 22.19 0.24 -3.85 16 5 C -0.06 -1.26 6.18 24.83 0.15 -1.10 16 6 C 0.21 4.02 3.67 29.85 0.11 4.13 16 7 H 0.13 2.65 8.13 -2.39 -0.02 2.63 16 8 O -0.56 -10.95 12.85 -146.95 -1.89 -12.84 16 9 C 0.04 0.77 5.34 86.30 0.46 1.23 16 10 N -0.70 -16.56 6.20 -513.89 -3.19 -19.74 16 11 C 0.08 2.16 5.05 86.30 0.44 2.59 16 12 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 13 H 0.12 3.79 8.14 -2.38 -0.02 3.77 16 14 C 0.27 10.95 13.66 89.45 1.22 12.17 16 15 N -0.51 -23.37 18.53 19.99 0.37 -23.00 16 16 C 0.04 1.70 4.42 29.85 0.13 1.83 16 17 C -0.54 -28.42 8.60 25.60 0.22 -28.20 16 18 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 19 C 0.01 0.56 5.46 84.65 0.46 1.02 16 20 N -0.92 -53.00 13.29 21.45 0.28 -52.71 16 21 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 O -0.18 -3.78 10.58 -0.54 -0.01 -3.79 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.39 5.36 8.97 -74.05 -0.66 4.70 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.35 7.80 8.29 -89.69 -0.74 7.05 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -67.90 345.23 1.83 -66.07 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -0.34 Total: 13.79 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.57 Total: -13.32 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -2.53 Total: -95.46 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -1.89 Total: -16.63 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.90 1.83 -66.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843089790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.598 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds